Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Reverse (-)

13516754 .. 13517365

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1135000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTATGTATGTATGTACGCATGTGCAGATGATATAAGAATCATCATCATGGGGAAGAACAAGATCGACATCAAGAAAATAAACAACAAGAACTACCTCAAGGCCACATTCTCCAAGCGGCGCAAGGGTTTGTTCCGAAAGGCCACTGATCTATGCTGTTTGACTGGCGCCACCCTCGCGGTTATAGCCTTTTCGCCCGGTAACAAGCCCTTCCTCTTTGGCCACCCCTCCGCCGAATCTGTCATTGATCGATTTCTTGCTGAACAAGCAAGGTGTGCATCCGATGATCGCAAAGAGGAGGTTCTTGAGTCCGGTAGTGCCGGCGTTGAGCACAAAAATTTGGAGTCGAGTCGAGAGGAAGAAAAGGAAGGGGGCCAAGGTATGGACGAGGAGAATGGGAATTTTTGGTGGGAGGAGCCGATTGACGAAGGGTTGGAACTGCCGGAACTCAAAAAGTACAAGTCTTTGTTAGAACGTTTGAGGGAGAATGGGGCTATTAAGTTAGATGAGATGAATAGGAGAGAATTGTGCACAAAAGATTATTTTGGTATGAATTGGGGTTTCGAGGTTGGTTCGAGCTCTTCTACTCCTAGCGAAGAAAGAGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

204

Amino Acids

23.05

Weight (kDa)

5.23

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	26 - 73	1.2e-16	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccII	CGCG	1 cut(s)	179
AciI	CCGC	3 cut(s)	118, 179, 231
AclI	AACGTT	1 cut(s)	475
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	2 cut(s)	337, 400
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	2 cut(s)	17, 458
AfiI	CCNNNNNNNGG	1 cut(s)	382
AluBI	AGCT	1 cut(s)	579
AluI	AGCT	1 cut(s)	579
Alw21I	GWGCWC	3 cut(s)	333, 533, 581
Alw44I	GTGCAC	1 cut(s)	529
AoxI	GGCC	4 cut(s)	102, 141, 220, 373
ApaLI	GTGCAC	1 cut(s)	529
ApoI	RAATTY	2 cut(s)	337, 400
AspLEI	GCGC	2 cut(s)	123, 170
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	533
BalI	TGGCCA	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	581
Bbv12I	GWGCWC	3 cut(s)	333, 533, 581
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	591
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme1390I	CCNGG	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	3 cut(s)	169, 374, 417
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	287
BpuEI	CTTGAG	2 cut(s)	83, 326
BpuMI	CCSGG	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	376
BsaWI	WCCGGW	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	169
Bse8I	GATNNNNATC	1 cut(s)	68
BseCI	ATCGAT	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	278
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	3 cut(s)	311, 404, 428
BseSI	GKGCMC	1 cut(s)	533
BsgI	GTGCAG	1 cut(s)	45
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	4 cut(s)	104, 143, 222, 375
BshNI	GGYRCC	1 cut(s)	167
BshVI	ATCGAT	1 cut(s)	250
BsiHKAI	GWGCWC	3 cut(s)	333, 533, 581
BsiSI	CCGG	4 cut(s)	198, 312, 321, 443
BslI	CCNNNNNNNGG	1 cut(s)	382
BsnI	GGCC	4 cut(s)	104, 143, 222, 375
Bsp1286I	GDGCHC	3 cut(s)	333, 533, 581
Bsp143I	GATC	4 cut(s)	63, 148, 247, 286
BspACI	CCGC	3 cut(s)	118, 179, 231
BspANI	GGCC	4 cut(s)	104, 143, 222, 375
BspDI	ATCGAT	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	3 cut(s)	169, 374, 417
BspQI	GCTCTTC	1 cut(s)	586
BspT107I	GGYRCC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	4 cut(s)	63, 148, 247, 286
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	376
Bst6I	CTCTTC	1 cut(s)	586
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	278
BstFNI	CGCG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	2 cut(s)	123, 170
BstKTI	GATC	4 cut(s)	66, 151, 250, 289
BstMBI	GATC	4 cut(s)	63, 148, 247, 286
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 185, 266, 275
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	533
BstUI	CGCG	1 cut(s)	179
Bsu15I	ATCGAT	1 cut(s)	250
BsuRI	GGCC	4 cut(s)	104, 143, 222, 375
BsuTUI	ATCGAT	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	278
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	2 cut(s)	123, 170
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	373
ClaI	ATCGAT	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	16, 457
CviAII	CATG	2 cut(s)	21, 49
CviJI	RGCY	9 cut(s)	104, 143, 188, 208, 222, 375, 418, 494, 579
CviKI_1	RGCY	9 cut(s)	104, 143, 188, 208, 222, 375, 418, 494, 579
CviQI	GTAC	2 cut(s)	16, 457
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	4 cut(s)	65, 150, 249, 288
DpnII	GATC	4 cut(s)	63, 148, 247, 286
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	586
EarI	CTCTTC	1 cut(s)	586
EciI	GGCGGA	1 cut(s)	220
Ecl136II	GAGCTC	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	581
Eco53kI	GAGCTC	1 cut(s)	579
EcoICRI	GAGCTC	1 cut(s)	579
EcoT14I	CCWWGG	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	581
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	2 cut(s)	24, 52
FatI	CATG	2 cut(s)	20, 48
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	265
FriOI	GRGCYC	1 cut(s)	581
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	591
GlaI	GCGC	2 cut(s)	122, 169
GluI	GCNGC	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	4 cut(s)	104, 143, 222, 375
HapII	CCGG	4 cut(s)	198, 312, 321, 443
HhaI	GCGC	2 cut(s)	123, 170
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	24, 52
Hin6I	GCGC	2 cut(s)	121, 168
HinP1I	GCGC	2 cut(s)	121, 168
HinfI	GANTC	5 cut(s)	39, 236, 308, 344, 349
HpaII	CCGG	4 cut(s)	198, 312, 321, 443
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	2 cut(s)	137, 283
Hpy188III	TCNNGA	3 cut(s)	73, 305, 353
Hpy8I	GTNNAC	1 cut(s)	531
HpyAV	CCTTC	3 cut(s)	220, 362, 422
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	3 cut(s)	26, 278, 531
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 185, 266, 275
HpySE526I	ACGT	1 cut(s)	475
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	24, 52
HspAI	GCGC	2 cut(s)	121, 168
KasI	GGCGCC	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	63, 148, 247, 286
LguI	GCTCTTC	1 cut(s)	586
LmnI	GCTCC	1 cut(s)	415
LpnPI	CCDG	5 cut(s)	150, 211, 325, 334, 456
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	4 cut(s)	65, 150, 249, 288
MboI	GATC	4 cut(s)	63, 148, 247, 286
MboII	GAAGA	4 cut(s)	67, 371, 573, 608
MhlI	GDGCHC	3 cut(s)	333, 533, 581
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	4 cut(s)	337, 400, 524, 553
MluNI	TGGCCA	1 cut(s)	222
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	3 cut(s)	317, 353, 358
MmeI	TCCRAC	1 cut(s)	414
Mox20I	TGGCCA	1 cut(s)	222
MroNI	GCCGGC	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	222
MspI	CCGG	4 cut(s)	198, 312, 321, 443
MspR9I	CCNGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	176, 185, 266, 275
NaeI	GCCGGC	1 cut(s)	322
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	4 cut(s)	63, 148, 247, 286
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	2 cut(s)	24, 52
NlaIV	GGNNCC	3 cut(s)	169, 374, 417
NspI	RCATGY	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	586
PdiI	GCCGGC	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	39, 236
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	3 cut(s)	316, 352, 357
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	3 cut(s)	316, 352, 357
Psp124BI	GAGCTC	1 cut(s)	581
Psp1406I	AACGTT	1 cut(s)	475
PspN4I	GGNNCC	3 cut(s)	169, 374, 417
PspPI	GGNCC	1 cut(s)	373
RsaI	GTAC	2 cut(s)	17, 458
RsaNI	GTAC	2 cut(s)	16, 457
RseI	CAYNNNNRTG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	581
SapI	GCTCTTC	1 cut(s)	586
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	4 cut(s)	63, 148, 247, 286
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	3 cut(s)	317, 353, 358
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	3 cut(s)	333, 533, 581
SetI	ASST	7 cut(s)	99, 275, 303, 382, 478, 570, 581
SfaNI	GCATC	1 cut(s)	287
SfoI	GGCGCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	2 cut(s)	98, 305
SmoI	CTYRAG	2 cut(s)	98, 305
Sse9I	AATT	4 cut(s)	337, 400, 524, 553
SsiI	CCGC	3 cut(s)	118, 179, 231
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	591
SstI	GAGCTC	1 cut(s)	581
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	376
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	6 cut(s)	66, 250, 347, 352, 564, 575
TasI	AATT	4 cut(s)	337, 400, 524, 553
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	39, 236
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	151
TspDTI	ATGAA	2 cut(s)	527, 566
TspRI	CASTG	1 cut(s)	151
Van91I	CCANNNNNTGG	1 cut(s)	382
VneI	GTGCAC	1 cut(s)	529
XapI	RAATTY	2 cut(s)	337, 400
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.