Rroxscaffold_3G00238010

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000806
Physical Location & Seq
Reverse (-)
25959263 .. 25972235
12973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238010.1

Sequence Viewer

Length: 618 bp
ATGGATAAAGCGGACTCCAAGTCCCTCTTTAATCGATGGTCTTACTTGGACTTTAGTGGTCCAATTTACGGGAGCGCAACTTGTGTTGCAATTATTAGAAACAACCAACGTGTTGTTGCCAATGCCGGTAATCCTCGTTGTGTCATATTGAGGAAGGGTCGTGTGATAAACTGTTTGTGGCTTGATATTGATCACATGGATGGAAGGAGGTTTTTACATGGGATAGGATGCTCTTTCCGCACCTGGAGGAGTATGCTTCTGGATTTTTGGACTTGGAAGCATTGGAAGACATGCAAGGAGGAATCGGTGTTTGCAGGTTATTACAAGGTCCGGAAGATCTTCGAGTACCGCACCGATGTTGCTAAAGCCTTGAATGCCCCTATCTTCCACGTAAATGCCGGTGATAAGGAGGCGATCGTTCATGTATGTGAGCTTGCGGTTCATTTGGGTGAAGAAGCAAATCAAACCAACAAGATGCTGAAGATAACCTACCAAGATAATAATGAAGAATTCGAGACAGCACCAACAGCCTTAGAAACAACAATCCTTGGATCAAGCAACTGCTCTCCCTTATGCTCATACAATATTGAGCATCTCGCTTTCCAAATGTGCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0033993 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

205

Amino Acids

23.55

Weight (kDa)

8.35

Isoelectric Point (pI)

30.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 305
AccIII TCCGGA 1 cut(s) 330
AciI CCGC 4 cut(s) 11, 238, 349, 437
AclWI GGATC 1 cut(s) 559
AcsI RAATTY 1 cut(s) 509
AcuI CTGAAG 1 cut(s) 500
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 1 cut(s) 373
AhdI GACNNNNNGTC 1 cut(s) 19
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 1 cut(s) 433
AluI AGCT 1 cut(s) 433
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 1 cut(s) 559
Aor13HI TCCGGA 1 cut(s) 330
ApoI RAATTY 1 cut(s) 509
Asp700I GAANNNNTTC 1 cut(s) 338
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 2 cut(s) 59, 328
AsuHPI GGTGA 2 cut(s) 413, 461
AvaII GGWCC 2 cut(s) 59, 328
BarI GAAGNNNNNNTAC 2 cut(s) 473, 505
BbsI GAAGAC 1 cut(s) 293
BccI CCATC 2 cut(s) 30, 194
BciT130I CCWGG 1 cut(s) 244
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 509
BfuAI ACCTGC 1 cut(s) 305
BglII AGATCT 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 244
Bme18I GGWCC 2 cut(s) 59, 328
BmeRI GACNNNNNGTC 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 59, 328
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 3 cut(s) 218, 465, 601
BpiI GAAGAC 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 265
Bsa29I ATCGAT 1 cut(s) 34
BsaAI YACGTR 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 547
BsaWI WCCGGW 1 cut(s) 330
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse118I RCCGGY 3 cut(s) 125, 398, 612
Bse8I GATNNNNATC 1 cut(s) 189
BseAI TCCGGA 1 cut(s) 330
BseBI CCWGG 1 cut(s) 244
BseCI ATCGAT 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 547
BseGI GGATG 2 cut(s) 205, 233
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 262
Bsh1285I CGRYCG 1 cut(s) 417
BshVI ATCGAT 1 cut(s) 34
BsiEI CGRYCG 1 cut(s) 417
BsiSI CCGG 4 cut(s) 126, 331, 399, 613
BslFI GGGAC 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 7
BsmI GAATGC 1 cut(s) 379
Bsp13I TCCGGA 1 cut(s) 330
Bsp143I GATC 4 cut(s) 190, 336, 414, 551
BspACI CCGC 4 cut(s) 11, 238, 349, 437
BspDI ATCGAT 1 cut(s) 34
BspEI TCCGGA 1 cut(s) 330
BspMI ACCTGC 1 cut(s) 305
BspPI GGATC 1 cut(s) 559
BsrFI RCCGGY 3 cut(s) 125, 398, 612
BssAI RCCGGY 3 cut(s) 125, 398, 612
BssECI CCNNGG 1 cut(s) 547
BssMI GATC 4 cut(s) 190, 336, 414, 551
BssT1I CCWWGG 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 1 cut(s) 532
BstF5I GGATG 2 cut(s) 205, 233
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 4 cut(s) 193, 339, 417, 554
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 4 cut(s) 190, 336, 414, 551
BstMCI CGRYCG 1 cut(s) 417
BstMWI GCNNNNNNNGC 3 cut(s) 237, 374, 527
BstNI CCWGG 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 242
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
Bsu15I ATCGAT 1 cut(s) 34
BsuTUI ATCGAT 1 cut(s) 34
BtsCI GGATG 2 cut(s) 205, 233
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 435
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 3 cut(s) 125, 398, 612
Cfr13I GGNCC 2 cut(s) 59, 328
ClaI ATCGAT 1 cut(s) 34
Csp6I GTAC 1 cut(s) 346
CviAII CATG 4 cut(s) 196, 218, 291, 422
CviJI RGCY 4 cut(s) 181, 368, 433, 530
CviKI_1 RGCY 4 cut(s) 181, 368, 433, 530
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 1 cut(s) 532
DpnI GATC 4 cut(s) 192, 338, 416, 553
DpnII GATC 4 cut(s) 190, 336, 414, 551
DriI GACNNNNNGTC 1 cut(s) 19
Eam1105I GACNNNNNGTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 547
Eco47I GGWCC 2 cut(s) 59, 328
Eco57I CTGAAG 1 cut(s) 500
EcoRI GAATTC 1 cut(s) 509
EcoRII CCWGG 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 547
FaeI CATG 4 cut(s) 199, 221, 294, 425
FaiI YATR 9 cut(s) 146, 197, 219, 254, 292, 423, 427, 574, 580
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 1 cut(s) 7
FatI CATG 4 cut(s) 195, 217, 290, 421
FbaI TGATCA 1 cut(s) 190
FokI GGATG 2 cut(s) 212, 240
GlaI GCGC 1 cut(s) 76
GsuI CTGGAG 1 cut(s) 265
HapII CCGG 4 cut(s) 126, 331, 399, 613
HhaI GCGC 1 cut(s) 77
Hin1II CATG 4 cut(s) 199, 221, 294, 425
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 2 cut(s) 14, 302
HpaII CCGG 4 cut(s) 126, 331, 399, 613
HphI GGTGA 2 cut(s) 413, 461
Hpy188III TCNNGA 3 cut(s) 260, 331, 514
HpyAV CCTTC 2 cut(s) 148, 198
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 2 cut(s) 109, 390
HpyCH4V TGCA 3 cut(s) 89, 294, 314
HpyF10VI GCNNNNNNNGC 3 cut(s) 237, 374, 527
HpyF3I CTNAG 1 cut(s) 532
HpySE526I ACGT 2 cut(s) 109, 390
Hsp92II CATG 4 cut(s) 199, 221, 294, 425
HspAI GCGC 1 cut(s) 75
Kpn2I TCCGGA 1 cut(s) 330
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 4 cut(s) 190, 336, 414, 551
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 7 cut(s) 139, 229, 245, 256, 300, 344, 412
LweI GCATC 3 cut(s) 218, 465, 601
MaeII ACGT 2 cut(s) 109, 390
MalI GATC 4 cut(s) 192, 338, 416, 553
MboI GATC 4 cut(s) 190, 336, 414, 551
MboII GAAGA 7 cut(s) 298, 331, 346, 376, 464, 493, 518
MflI RGATCY 1 cut(s) 336
MluCI AATT 3 cut(s) 63, 90, 509
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 7 cut(s) 35, 144, 144, 201, 240, 292, 403
MroI TCCGGA 1 cut(s) 330
MroXI GAANNNNTTC 1 cut(s) 338
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 4 cut(s) 198, 393, 426, 447
MspI CCGG 4 cut(s) 126, 331, 399, 613
MspR9I CCNGG 1 cut(s) 244
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 3 cut(s) 237, 374, 527
NdeII GATC 4 cut(s) 190, 336, 414, 551
NlaIII CATG 4 cut(s) 199, 221, 294, 425
NspI RCATGY 1 cut(s) 294
PctI GAATGC 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 302
Ple19I CGATCG 1 cut(s) 417
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
Ppu21I YACGTR 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspPI GGNCC 2 cut(s) 59, 328
PsuI RGATCY 1 cut(s) 336
PvuI CGATCG 1 cut(s) 417
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 4 cut(s) 198, 393, 426, 447
SaqAI TTAA 1 cut(s) 30
Sau3AI GATC 4 cut(s) 190, 336, 414, 551
Sau96I GGNCC 2 cut(s) 59, 328
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 244
SetI ASST 8 cut(s) 112, 212, 245, 319, 330, 393, 435, 491
SfaNI GCATC 3 cut(s) 218, 465, 601
SinI GGWCC 2 cut(s) 59, 328
SmiMI CAYNNNNRTG 4 cut(s) 198, 393, 426, 447
Sse9I AATT 3 cut(s) 63, 90, 509
SsiI CCGC 4 cut(s) 11, 238, 349, 437
SspI AATATT 1 cut(s) 586
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 547
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 2 cut(s) 112, 393
TaqI TCGA 3 cut(s) 34, 342, 513
TasI AATT 3 cut(s) 63, 90, 509
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TspDTI ATGAA 3 cut(s) 410, 431, 519
VpaK11BI GGWCC 2 cut(s) 59, 328
XapI RAATTY 1 cut(s) 509
XceI RCATGY 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.