Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Reverse (-)

8500923 .. 8501438

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1046000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGATGCGTGAAGATCGAAATAAAAAAAAAAACCAACAAGAACTACCTCAAGGCCACCTTCTCAAAGCGGCGCAAGGGTCTCTGCGGCAAAGCCACTGATCTTTCCCGTTTGACTGGTTGCCCGATCGCCCTTATCGTCTTTTCGCCTGCTAGCAGACTGTTCCTCTTTGGGCAGCCCTCTGCGGAAACCGTCATAGATTGCTTTCTTGCCCAACAAGCTCCATTCACAGATAATGATCATGAGGATGAGAGTTTTGAATCCATTCATGGCGTCGATGACCGTGAAGATTTAGAAAACAACCAAGAGGAATATAAACAAGAGGATGAGATGAATGACGAAAAGGTCAATTTTTGGTGGGATGAGCTTGTTGGTGAACAACTGGAACTACATGAACTCATACAATATAAGACTTTGCTAAATAAGTTGAGAGAGAATGTGGCTCGGAAGTTACAAGACATGAATCGGAGAGAACTTTGCACCATAGATTTTTTTTTGGAAAGAACACATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

172

Amino Acids

19.98

Weight (kDa)

5.11

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	12 - 57	3.3e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
AciI	CCGC	3 cut(s)	70, 87, 185
AcyI	GRCGYC	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	260
AluBI	AGCT	2 cut(s)	221, 367
AluI	AGCT	2 cut(s)	221, 367
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	175
Asp700I	GAANNNNTTC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	386
AsuNHI	GCTAGC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	187
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	153
BisI	GCNGC	3 cut(s)	71, 88, 176
BlsI	GCNGC	3 cut(s)	72, 89, 177
BmtI	GCTAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	273
BsaI	GGTCTC	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	121, 387
Bse8I	GATNNNNATC	1 cut(s)	237
BseGI	GGATG	4 cut(s)	11, 253, 331, 367
BseJI	GATNNNNATC	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	121, 387
BseXI	GCAGC	1 cut(s)	187
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	15, 100, 126, 238
BspACI	CCGC	3 cut(s)	70, 87, 185
BspANI	GGCC	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	241
BspOI	GCTAGC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	121, 387
BssMI	GATC	4 cut(s)	15, 100, 126, 238
BssNI	GRCGYC	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	162, 193, 284
BstACI	GRCGYC	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	150, 154
BstF5I	GGATG	4 cut(s)	11, 253, 331, 367
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	4 cut(s)	18, 103, 129, 241
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	4 cut(s)	15, 100, 126, 238
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	512
BstV1I	GCAGC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	4 cut(s)	11, 253, 331, 367
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	2 cut(s)	150, 154
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	75
CseI	GACGC	1 cut(s)	262
CviAII	CATG	5 cut(s)	242, 269, 392, 460, 509
CviJI	RGCY	6 cut(s)	56, 95, 178, 221, 367, 443
CviKI_1	RGCY	6 cut(s)	56, 95, 178, 221, 367, 443
DpnI	GATC	4 cut(s)	17, 102, 128, 240
DpnII	GATC	4 cut(s)	15, 100, 126, 238
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
Eco31I	GGTCTC	1 cut(s)	86
EcoT22I	ATGCAT	1 cut(s)	514
FaeI	CATG	5 cut(s)	245, 272, 395, 463, 512
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	5 cut(s)	241, 268, 391, 459, 508
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	3 cut(s)	71, 88, 176
FokI	GGATG	4 cut(s)	18, 260, 338, 374
Fsp4HI	GCNGC	3 cut(s)	71, 88, 176
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	3 cut(s)	71, 88, 176
HaeIII	GGCC	1 cut(s)	56
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	5 cut(s)	245, 272, 395, 463, 512
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	260, 463
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	447, 468
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	377
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	3 cut(s)	162, 193, 284
HpyCH4V	TGCA	2 cut(s)	480, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	5 cut(s)	245, 272, 395, 463, 512
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	15, 100, 126, 238
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	3 cut(s)	102, 162, 368
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	450
MalI	GATC	4 cut(s)	17, 102, 128, 240
MboI	GATC	4 cut(s)	15, 100, 126, 238
MboII	GAAGA	2 cut(s)	25, 299
MluCI	AATT	1 cut(s)	349
MnlI	CCTC	6 cut(s)	59, 176, 190, 238, 301, 316
Mph1103I	ATGCAT	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeII	GATC	4 cut(s)	15, 100, 126, 238
NheI	GCTAGC	1 cut(s)	152
NlaIII	CATG	5 cut(s)	245, 272, 395, 463, 512
NsiI	ATGCAT	1 cut(s)	514
NspI	RCATGY	1 cut(s)	512
PagI	TCATGA	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	260, 463
PkrI	GCNGC	3 cut(s)	72, 89, 177
Ple19I	CGATCG	1 cut(s)	129
PvuI	CGATCG	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	3 cut(s)	71, 88, 176
Sau3AI	GATC	4 cut(s)	15, 100, 126, 238
SetI	ASST	5 cut(s)	51, 62, 223, 348, 369
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	3 cut(s)	70, 87, 185
SspMI	CTAG	1 cut(s)	153
TaaI	ACNGT	3 cut(s)	162, 193, 284
TaqI	TCGA	2 cut(s)	18, 276
TasI	AATT	1 cut(s)	349
TauI	GCSGC	2 cut(s)	73, 90
TfiI	GAWTC	2 cut(s)	260, 463
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	1 cut(s)	175
TspDTI	ATGAA	4 cut(s)	257, 347, 408, 476
TspRI	CASTG	1 cut(s)	103
XceI	RCATGY	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.