pycom11g12800

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000806
Physical Location & Seq
Reverse (-)
11831596 .. 11832421
826 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g12800.1

Sequence Viewer

Length: 660 bp
ATGAGGGATAAGAAGATTCAGAGGAAGAAGACGACGTATATACATATATATATATATATATATATATATATATATATGTGTGCAGATTATATACGAATCATCATGGGGAAGAACAGGATCGACATCAAGAAAATAACCAACAAGAACTACCTCAAGGCCACATTCTCAAAGCGGCGCAAGGGTTTGTTCCGAAAGGCCACTGATCTTTGCTGCTTGACTGGCGCCACCCTTGCCGTTATTGCCTTTTCGCCCGGTAACAATCCTTTCCTCTTCGGCCACCCCTCTGCAGAATCTGTCATTGATCGATTTCTTGGTGAACGAGCGAGGTGTGCATCCGATGATGGCGGAGAGGAGGTTCTTGGGTCAGCTAGTGCCGGCAATGAGCACCAAGATTTGGAATCGAGTCGAGAGGAAGTGAAAGAAGGTTCCGATGTTATGGACGAGGAGAAGGGGAGTTTGTGGTGGGAGAAGCCGATTGAAGAAGGATTGGAACTGCCGGAGCTTAAAAAGTACAAGTCTTTGTTAGAACGTTTGAGGGAGAATGCGGCTATTAAGTTGGATGAGATGAATAGGAGAGAACTTTGTACCAAGGATTATTTGGGTTTGAATTTCGAGATTGGTTCGAGCTCTTCTACTCCTGCCGACGAAAGAGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

220

Amino Acids

25.06

Weight (kDa)

6.85

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 44 - 91 3.7e-16 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccB7I CCANNNNNTGG 1 cut(s) 394
AciI CCGC 3 cut(s) 172, 345, 545
AclI AACGTT 1 cut(s) 529
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 1 cut(s) 607
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 512, 586
AfiI CCNNNNNNNGG 1 cut(s) 394
AgsI TTSAA 2 cut(s) 479, 607
AloI GAACNNNNNNTCC 2 cut(s) 339, 371
AluBI AGCT 3 cut(s) 368, 502, 627
AluI AGCT 3 cut(s) 368, 502, 627
Alw21I GWGCWC 2 cut(s) 387, 629
AlwI GGATC 1 cut(s) 125
AlwNI CAGNNNCTG 1 cut(s) 293
AoxI GGCC 3 cut(s) 156, 195, 274
ApeKI GCWGC 1 cut(s) 210
ApoI RAATTY 1 cut(s) 607
AspLEI GCGC 2 cut(s) 177, 224
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 326
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 629
BbsI GAAGAC 1 cut(s) 35
Bbv12I GWGCWC 2 cut(s) 387, 629
BbvI GCAGC 1 cut(s) 197
BccI CCATC 1 cut(s) 335
BceAI ACGGC 1 cut(s) 218
BcnI CCSGG 1 cut(s) 252
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 285
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 3 cut(s) 173, 211, 546
BlsI GCNGC 3 cut(s) 174, 212, 547
Bme1390I CCNGG 1 cut(s) 252
BmiI GGNNCC 2 cut(s) 223, 427
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 252
Bsa29I ATCGAT 1 cut(s) 304
BsaBI GATNNNNATC 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 588
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 385
Bse8I GATNNNNATC 1 cut(s) 122
BseCI ATCGAT 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 588
BseGI GGATG 2 cut(s) 332, 565
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMI GCAATG 1 cut(s) 385
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 2 cut(s) 365, 458
BseXI GCAGC 1 cut(s) 197
BsgI GTGCAG 1 cut(s) 102
BshFI GGCC 3 cut(s) 158, 197, 276
BshNI GGYRCC 1 cut(s) 221
BshVI ATCGAT 1 cut(s) 304
BsiHKAI GWGCWC 2 cut(s) 387, 629
BsiSI CCGG 3 cut(s) 252, 375, 497
BslI CCNNNNNNNGG 1 cut(s) 394
BsmI GAATGC 1 cut(s) 547
BsnI GGCC 3 cut(s) 158, 197, 276
Bsp1286I GDGCHC 2 cut(s) 387, 629
Bsp143I GATC 3 cut(s) 117, 202, 301
BspACI CCGC 3 cut(s) 172, 345, 545
BspANI GGCC 3 cut(s) 158, 197, 276
BspDI ATCGAT 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 223, 427
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 1 cut(s) 125
BspQI GCTCTTC 1 cut(s) 634
BspT107I GGYRCC 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 588
BssMI GATC 3 cut(s) 117, 202, 301
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 588
Bst6I CTCTTC 2 cut(s) 275, 634
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 376
BstF5I GGATG 2 cut(s) 332, 565
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 177, 224
BstKTI GATC 3 cut(s) 120, 205, 304
BstMBI GATC 3 cut(s) 117, 202, 301
BstMWI GCNNNNNNNGC 4 cut(s) 219, 230, 239, 329
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 35
Bsu15I ATCGAT 1 cut(s) 304
BsuRI GGCC 3 cut(s) 158, 197, 276
BsuTUI ATCGAT 1 cut(s) 304
BtsCI GGATG 2 cut(s) 332, 565
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 376
CaiI CAGNNNCTG 1 cut(s) 293
CfoI GCGC 2 cut(s) 177, 224
Cfr10I RCCGGY 1 cut(s) 374
ClaI ATCGAT 1 cut(s) 304
Csp6I GTAC 2 cut(s) 511, 585
CviAII CATG 1 cut(s) 103
CviJI RGCY 8 cut(s) 158, 197, 276, 368, 472, 502, 548, 627
CviKI_1 RGCY 8 cut(s) 158, 197, 276, 368, 472, 502, 548, 627
CviQI GTAC 2 cut(s) 511, 585
DinI GGCGCC 1 cut(s) 223
DpnI GATC 3 cut(s) 119, 204, 303
DpnII GATC 3 cut(s) 117, 202, 301
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 2 cut(s) 275, 634
EarI CTCTTC 2 cut(s) 275, 634
EciI GGCGGA 1 cut(s) 360
Ecl136II GAGCTC 1 cut(s) 627
Eco130I CCWWGG 1 cut(s) 588
Eco24I GRGCYC 1 cut(s) 629
Eco53kI GAGCTC 1 cut(s) 627
EcoICRI GAGCTC 1 cut(s) 627
EcoT14I CCWWGG 1 cut(s) 588
EcoT38I GRGCYC 1 cut(s) 629
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 588
FaeI CATG 1 cut(s) 106
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 173, 211, 546
FokI GGATG 2 cut(s) 319, 572
FriOI GRGCYC 1 cut(s) 629
Fsp4HI GCNGC 3 cut(s) 173, 211, 546
FspBI CTAG 1 cut(s) 369
GlaI GCGC 2 cut(s) 176, 223
GluI GCNGC 3 cut(s) 173, 211, 546
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 3 cut(s) 158, 197, 276
HapII CCGG 3 cut(s) 252, 375, 497
HhaI GCGC 2 cut(s) 177, 224
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 1 cut(s) 106
Hin6I GCGC 2 cut(s) 175, 222
HinP1I GCGC 2 cut(s) 175, 222
HinfI GANTC 5 cut(s) 16, 96, 290, 398, 403
HpaII CCGG 3 cut(s) 252, 375, 497
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 317
Hpy188I TCNGA 4 cut(s) 21, 191, 337, 430
Hpy188III TCNNGA 3 cut(s) 127, 407, 613
Hpy8I GTNNAC 1 cut(s) 317
Hpy99I CGWCG 2 cut(s) 37, 647
HpyAV CCTTC 3 cut(s) 416, 442, 476
HpyCH4IV ACGT 2 cut(s) 35, 529
HpyCH4V TGCA 3 cut(s) 83, 287, 332
HpyF10VI GCNNNNNNNGC 4 cut(s) 219, 230, 239, 329
HpySE526I ACGT 2 cut(s) 35, 529
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 1 cut(s) 106
HspAI GCGC 2 cut(s) 175, 222
KasI GGCGCC 1 cut(s) 221
KroI GCCGGC 1 cut(s) 374
KroNI GCCGGC 1 cut(s) 376
Kzo9I GATC 3 cut(s) 117, 202, 301
LguI GCTCTTC 1 cut(s) 634
LmnI GCTCC 1 cut(s) 499
LpnPI CCDG 6 cut(s) 100, 204, 265, 388, 510, 651
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 341
MaeI CTAG 1 cut(s) 369
MaeII ACGT 2 cut(s) 35, 529
MaeIII GTNAC 1 cut(s) 254
MalI GATC 3 cut(s) 119, 204, 303
MboI GATC 3 cut(s) 117, 202, 301
MboII GAAGA 7 cut(s) 25, 37, 40, 121, 262, 491, 621
MhlI GDGCHC 2 cut(s) 387, 629
MluCI AATT 1 cut(s) 607
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 1 cut(s) 412
MmeI TCCRAC 1 cut(s) 537
MroNI GCCGGC 1 cut(s) 374
MseI TTAA 2 cut(s) 504, 552
MspI CCGG 3 cut(s) 252, 375, 497
MspR9I CCNGG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 547
MwoI GCNNNNNNNGC 4 cut(s) 219, 230, 239, 329
NaeI GCCGGC 1 cut(s) 376
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 1 cut(s) 252
NdeII GATC 3 cut(s) 117, 202, 301
NgoMIV GCCGGC 1 cut(s) 374
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 2 cut(s) 223, 427
PciSI GCTCTTC 1 cut(s) 634
PctI GAATGC 1 cut(s) 547
PdiI GCCGGC 1 cut(s) 376
PfeI GAWTC 4 cut(s) 16, 96, 290, 398
PflMI CCANNNNNTGG 1 cut(s) 394
PkrI GCNGC 3 cut(s) 174, 212, 547
PleI GAGTC 1 cut(s) 411
PluTI GGCGCC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 629
Psp1406I AACGTT 1 cut(s) 529
PspN4I GGNNCC 2 cut(s) 223, 427
PstI CTGCAG 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 293
RsaI GTAC 2 cut(s) 512, 586
RsaNI GTAC 2 cut(s) 511, 585
SacI GAGCTC 1 cut(s) 629
SapI GCTCTTC 1 cut(s) 634
SaqAI TTAA 2 cut(s) 504, 552
SatI GCNGC 3 cut(s) 173, 211, 546
Sau3AI GATC 3 cut(s) 117, 202, 301
SchI GAGTC 1 cut(s) 412
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 2 cut(s) 387, 629
SetI ASST 9 cut(s) 38, 153, 329, 357, 370, 427, 504, 532, 629
SfaNI GCATC 1 cut(s) 341
SfcI CTRYAG 1 cut(s) 285
SfoI GGCGCC 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 607
SsiI CCGC 3 cut(s) 172, 345, 545
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 1 cut(s) 369
SstI GAGCTC 1 cut(s) 629
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 1 cut(s) 588
TaiI ACGT 2 cut(s) 38, 532
TaqI TCGA 6 cut(s) 120, 304, 401, 406, 612, 623
TasI AATT 1 cut(s) 607
TatI WGTACW 1 cut(s) 510
TauI GCSGC 2 cut(s) 175, 548
TfiI GAWTC 4 cut(s) 16, 96, 290, 398
Tru1I TTAA 2 cut(s) 504, 552
Tru9I TTAA 2 cut(s) 504, 552
TscAI CASTG 1 cut(s) 205
TseI GCWGC 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 581
TspRI CASTG 1 cut(s) 205
Van91I CCANNNNNTGG 1 cut(s) 394
XapI RAATTY 1 cut(s) 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 595
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.