Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000806

Physical Location & Seq

Genomic Coordinates Reverse (-)

8822526 .. 8823195

Gene Structure 670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G119300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGAAGACATCAGATCAACATCATGAAAATAAACAACAAGAACTACCTCAAGGCCACCTTCTCAAAGCGGCGCAAGGGTCTCTTCCGCAAAGCCACTGATCTGTGCTGCTTGTCGGGTGCACAGATTGCGATTATTACCTTTTCACCTGGTAACAAGCCCTTCCTCTTTGGAAACCCCTCCGCCAAAGCTGTCCTAGATCGATTTCTTGGTGAACAAGATTCATGTACATCTAATGATCATGATGAGGAGGGCCTTGGATCCACTCCTGAAGACAGTGATCATGGAGATTTAGAAGCATCGCAAGAAGGGAGTAATGAAATTGAGGATGTTATGGATGAGGACAGAGTCAATTTTTGGTGGGATGAGCCTATTGATGATGAATTGGGGATATATGAACTTCAAAAATATAAGGGTTTGCTAGAAGCTTTGAAAGAGAATGTGGCTAGTAAGTTAGATGATATGAATAGGAGAGAATTTTACACCAAGGATTTTTTGAGTATGTTTTGTATTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

173

Amino Acids

19.59

Weight (kDa)

4.73

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14511 FvH4_6g03620 FvH4_6g03640 FvH4_6g27190 FvH4_6g50720
malus_domestica	MD00G1046000.v1.1 MD03G1135000.v1.1 MD11G1157700.v1.1
prunus_persica	Prupe.6G119300_v2.0.a1 Prupe.6G119400_v2.0.a1 Prupe.6G124000_v2.0.a1
pyrus_communis	pycom11g12800
rosa_chinensis	RchiOBHm_Chr2g0129251 RchiOBHm_Chr3g0452161 RchiOBHm_Chr3g0452171 RchiOBHm_Chr5g0023891 RchiOBHm_Chr7g0212081
rosa_laevigata	RLG00000019068 RLG00000025621 RLG00000025622 RLG00000025623 RLG00000032746
rosa_multiflora	Rmu_co8470725.1_g000001 Rmu_sc0005230.1_g000008 Rmu_sc0020870.1_g000003 Rmu_sc0020870.1_g000004 Rmu_sc0020870.1_g000005 Rmu_sc0022763.1_g000001
rosa_roxburghii	Rroxscaffold_164G00435990 Rroxscaffold_164G00436000 Rroxscaffold_164G00436010 Rroxscaffold_1G00055320 Rroxscaffold_2G00114730 Rroxscaffold_3G00238010 Rroxscaffold_6G00429290 Rroxscaffold_6G00429300 Rroxscaffold_6G00429310
rosa_rugosa	Rorug02G0285500.1 Rorug02G0638600 Rorug02G0638700 Rorug02G0638800 Rorug05G0080100
rosa_samantha	Rh2AG337600 Rh2BG345400 Rh2CG324900 Rh2DG362800 Rh2DG362900 Rh3AG040700 Rh3BG042200 Rh3BG042300 Rh3BG042400 Rh3CG040600 Rh3CG040700 Rh3CG040800 Rh3DG041500 Rh3DG041600 Rh3DG041700 Rh5AG170400 Rh5BG167500 Rh5CG183000 Rh5DG169600 Rh7AG263600 Rh7AG486600 Rh7CG280100
rosa_wichuraiana	Rw2G027380 Rw3G002550 Rw3G003100 Rw3G003110 Rw5G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	70, 88, 183
AclWI	GGATC	2 cut(s)	255, 268
AcsI	RAATTY	1 cut(s)	476
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	404, 433
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	2 cut(s)	191, 428
AluI	AGCT	2 cut(s)	191, 428
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	86
Alw44I	GTGCAC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	255, 268
AoxI	GGCC	2 cut(s)	54, 253
ApaLI	GTGCAC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	108
ApoI	RAATTY	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	138, 224
BaeGI	GKGCMC	1 cut(s)	124
BamHI	GGATCC	1 cut(s)	260
BbsI	GAAGAC	2 cut(s)	13, 279
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	150
BclI	TGATCA	2 cut(s)	238, 280
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	3 cut(s)	197, 422, 447
BisI	GCNGC	2 cut(s)	71, 109
BlsI	GCNGC	2 cut(s)	72, 110
Bme1390I	CCNGG	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	308
BpiI	GAAGAC	2 cut(s)	13, 279
BpuEI	CTTGAG	1 cut(s)	35
Bsa29I	ATCGAT	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	256, 486
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	256, 486
BseGI	GGATG	3 cut(s)	334, 343, 370
BseJI	GATNNNNATC	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	95
BshFI	GGCC	2 cut(s)	56, 255
BshVI	ATCGAT	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	56, 255
Bso31I	GGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	227
Bsp143I	GATC	6 cut(s)	15, 100, 199, 238, 260, 280
BspACI	CCGC	3 cut(s)	70, 88, 183
BspANI	GGCC	2 cut(s)	56, 255
BspDI	ATCGAT	1 cut(s)	202
BspHI	TCATGA	2 cut(s)	24, 241
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	2 cut(s)	255, 268
BspTNI	GGTCTC	1 cut(s)	86
BsrGI	TGTACA	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	256, 486
BssMI	GATC	6 cut(s)	15, 100, 199, 238, 260, 280
BssT1I	CCWWGG	2 cut(s)	256, 486
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstAUI	TGTACA	1 cut(s)	227
BstF5I	GGATG	3 cut(s)	334, 343, 370
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	6 cut(s)	18, 103, 202, 241, 263, 283
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	6 cut(s)	15, 100, 199, 238, 260, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	2 cut(s)	13, 279
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
Bsu15I	ATCGAT	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	56, 255
BsuTUI	ATCGAT	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	285
BtsCI	GGATG	3 cut(s)	334, 343, 370
BtsIMutI	CAGTG	2 cut(s)	96, 283
CciI	TCATGA	2 cut(s)	24, 241
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	253
ClaI	ATCGAT	1 cut(s)	202
CsiI	ACCWGGT	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	4 cut(s)	25, 225, 242, 284
CviJI	RGCY	8 cut(s)	56, 95, 160, 191, 255, 370, 428, 446
CviKI_1	RGCY	8 cut(s)	56, 95, 160, 191, 255, 370, 428, 446
CviQI	GTAC	1 cut(s)	228
DpnI	GATC	6 cut(s)	17, 102, 201, 240, 262, 282
DpnII	GATC	6 cut(s)	15, 100, 199, 238, 260, 280
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
EciI	GGCGGA	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	256, 486
Eco31I	GGTCTC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	2 cut(s)	256, 486
ErhI	CCWWGG	2 cut(s)	256, 486
FaeI	CATG	4 cut(s)	28, 228, 245, 287
FalI	AAGNNNNNCTT	4 cut(s)	44, 76, 68, 100
FatI	CATG	4 cut(s)	24, 224, 241, 283
FbaI	TGATCA	2 cut(s)	238, 280
Fnu4HI	GCNGC	2 cut(s)	71, 109
FokI	GGATG	3 cut(s)	341, 350, 377
Fsp4HI	GCNGC	2 cut(s)	71, 109
FspBI	CTAG	3 cut(s)	197, 422, 447
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	2 cut(s)	71, 109
HaeIII	GGCC	2 cut(s)	56, 255
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	4 cut(s)	28, 228, 245, 287
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	2 cut(s)	221, 348
HphI	GGTGA	2 cut(s)	138, 224
Hpy166II	GTNNAC	2 cut(s)	122, 215
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	3 cut(s)	25, 242, 269
Hpy8I	GTNNAC	2 cut(s)	122, 215
HpyAV	CCTTC	3 cut(s)	70, 172, 302
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
Hsp92II	CATG	4 cut(s)	28, 228, 245, 287
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	2 cut(s)	238, 280
Kzo9I	GATC	6 cut(s)	15, 100, 199, 238, 260, 280
LpnPI	CCDG	3 cut(s)	135, 162, 282
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	308
MabI	ACCWGGT	1 cut(s)	148
MaeI	CTAG	3 cut(s)	197, 422, 447
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	6 cut(s)	17, 102, 201, 240, 262, 282
MboI	GATC	6 cut(s)	15, 100, 199, 238, 260, 280
MboII	GAAGA	3 cut(s)	18, 76, 284
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	4 cut(s)	321, 352, 383, 476
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	7 cut(s)	59, 176, 190, 241, 244, 319, 334
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	6 cut(s)	15, 100, 199, 238, 260, 280
NlaIII	CATG	4 cut(s)	28, 228, 245, 287
NlaIV	GGNNCC	1 cut(s)	262
PagI	TCATGA	2 cut(s)	24, 241
PfeI	GAWTC	1 cut(s)	221
PflFI	GACNNNGTC	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	72, 110
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	347
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SatI	GCNGC	2 cut(s)	71, 109
Sau3AI	GATC	6 cut(s)	15, 100, 199, 238, 260, 280
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	6 cut(s)	51, 62, 143, 151, 193, 430
SexAI	ACCWGGT	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	4 cut(s)	321, 352, 383, 476
SsiI	CCGC	3 cut(s)	70, 88, 183
SspMI	CTAG	3 cut(s)	197, 422, 447
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	2 cut(s)	256, 486
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	202
TasI	AATT	4 cut(s)	321, 352, 383, 476
TatI	WGTACW	1 cut(s)	227
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	221
TscAI	CASTG	2 cut(s)	103, 283
TseI	GCWGC	1 cut(s)	108
TspDTI	ATGAA	7 cut(s)	41, 213, 333, 396, 411, 479, 504
TspRI	CASTG	2 cut(s)	103, 283
Tth111I	GACNNNGTC	1 cut(s)	347
VneI	GTGCAC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	476
XspI	CTAG	3 cut(s)	197, 422, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.