RchiOBHm_Chr5g0023891

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000806
Physical Location & Seq
Forward (+)
18125465 .. 18126250
786 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30369

Sequence Viewer

Length: 618 bp
ATGGGACGAAGGAAGATTGAAATCAAGAAAATCGACAACAAAGCCTACCTAAAGGCCACCTTTTCGAAGCGGCGAAAGGGTTTGTTCCGAAAAGCTGCTGAGCTTTGTGATATGTGCGGTGCCGAGATCGCCATTCTTACCGTTTCACCGGGTGGCAAGTTCTACAATTTTGGTCACCCGAACGTTGATTCCATCATAGCTCGGTATTGTGGTGGTGAGACTTCATGTATACTTCATGAAAATCATGATTGTGTGAGTCATGAAGATGATGATGAAGATTTAGAAGGCGAGCAAGAGAAGGAAGAGGATATTACCGATGATGTCGATGAGGTTGAGCCTATCCATGAGGAGGAGCCTATCCACAAGGCCGGCGAGGAGAAGGAGCTTATTGACCTTATCAATAGAGAAGGAGATGGGACGATGCGCTTATCAATAGACTTCTCCCGCAAGTTTTGGTGGAATGAGGAGGAGCCTATTGATCCAGAACAACGTGAGATGTACATTCATAGCCTAATGGAATTGAGAAACAATGTGATTTGGGTGTTGAATGATAGGAACAGGAGAGAATCATACGTTAAGGACTATATGGGTGGGGATATAAGTTATGATATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

205

Amino Acids

23.92

Weight (kDa)

4.72

Isoelectric Point (pI)

58.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 4.9e-18 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AccI GTMKAC 1 cut(s) 229
AciI CCGC 3 cut(s) 70, 117, 445
AclI AACGTT 1 cut(s) 183
AclWI GGATC 1 cut(s) 473
AdeI CACNNNGTG 1 cut(s) 152
AfaI GTAC 1 cut(s) 500
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 2 cut(s) 20, 547
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 4 cut(s) 95, 103, 200, 385
AluI AGCT 4 cut(s) 95, 103, 200, 385
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 1 cut(s) 473
AoxI GGCC 2 cut(s) 54, 366
ApeKI GCWGC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 426
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 138, 167, 227
AsuII TTCGAA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 82
BccI CCATC 2 cut(s) 200, 407
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 212
BisI GCNGC 2 cut(s) 71, 96
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 2 cut(s) 72, 97
Bme1390I CCNGG 1 cut(s) 150
BmiI GGNNCC 3 cut(s) 121, 354, 471
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse118I RCCGGY 1 cut(s) 368
Bse8I GATNNNNATC 1 cut(s) 20
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 90
BseRI GAGGAG 5 cut(s) 362, 365, 389, 479, 482
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 2 cut(s) 56, 368
BshNI GGYRCC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 149, 369
BslFI GGGAC 2 cut(s) 18, 430
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 2 cut(s) 18, 430
BsnI GGCC 2 cut(s) 56, 368
Bsp119I TTCGAA 1 cut(s) 65
Bsp1407I TGTACA 1 cut(s) 498
Bsp143I GATC 2 cut(s) 126, 478
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 3 cut(s) 70, 117, 445
BspANI GGCC 2 cut(s) 56, 368
BspCNI CTCAG 1 cut(s) 91
BspHI TCATGA 3 cut(s) 235, 244, 259
BspLI GGNNCC 3 cut(s) 121, 354, 471
BspPI GGATC 1 cut(s) 473
BspT104I TTCGAA 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 368
BsrGI TGTACA 1 cut(s) 498
BssAI RCCGGY 1 cut(s) 368
BssMI GATC 2 cut(s) 126, 478
BssNAI GTATAC 1 cut(s) 230
Bst1107I GTATAC 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 297
BstAUI TGTACA 1 cut(s) 498
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 290, 370
BstDEI CTNAG 1 cut(s) 99
BstEII GGTNACC 1 cut(s) 173
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 2 cut(s) 129, 481
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 2 cut(s) 126, 478
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 82
BstZ17I GTATAC 1 cut(s) 230
BsuRI GGCC 2 cut(s) 56, 368
Cac8I GCNNGC 2 cut(s) 290, 370
CciI TCATGA 3 cut(s) 235, 244, 259
CfoI GCGC 1 cut(s) 426
Cfr10I RCCGGY 1 cut(s) 368
Csp6I GTAC 1 cut(s) 499
CviAII CATG 5 cut(s) 225, 236, 245, 260, 344
CviQI GTAC 1 cut(s) 499
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 128, 480
DpnII GATC 2 cut(s) 126, 478
DraIII CACNNNGTG 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 173
FaeI CATG 5 cut(s) 228, 239, 248, 263, 347
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 2 cut(s) 18, 430
FatI CATG 5 cut(s) 224, 235, 244, 259, 343
FauI CCCGC 1 cut(s) 452
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 71, 96
Fsp4HI GCNGC 2 cut(s) 71, 96
GlaI GCGC 1 cut(s) 425
GluI GCNGC 2 cut(s) 71, 96
HaeIII GGCC 2 cut(s) 56, 368
HapII CCGG 2 cut(s) 149, 369
HhaI GCGC 1 cut(s) 426
Hin1II CATG 5 cut(s) 228, 239, 248, 263, 347
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 3 cut(s) 188, 256, 566
HpaII CCGG 2 cut(s) 149, 369
HphI GGTGA 3 cut(s) 138, 167, 227
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 5 cut(s) 25, 236, 245, 260, 482
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 5 cut(s) 3, 278, 292, 373, 401
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 3 cut(s) 183, 490, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 3 cut(s) 183, 490, 573
Hsp92II CATG 5 cut(s) 228, 239, 248, 263, 347
HspAI GCGC 1 cut(s) 424
KroI GCCGGC 1 cut(s) 368
KroNI GCCGGC 1 cut(s) 370
Kzo9I GATC 2 cut(s) 126, 478
LmnI GCTCC 3 cut(s) 352, 382, 469
LpnPI CCDG 4 cut(s) 162, 382, 495, 544
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 411
MaeII ACGT 3 cut(s) 183, 490, 573
MaeIII GTNAC 1 cut(s) 173
MalI GATC 2 cut(s) 128, 480
MboI GATC 2 cut(s) 126, 478
MboII GAAGA 4 cut(s) 25, 275, 287, 314
MluCI AATT 2 cut(s) 166, 518
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 7 cut(s) 298, 322, 340, 343, 367, 457, 460
MroNI GCCGGC 1 cut(s) 368
MseI TTAA 1 cut(s) 576
MslI CAYNNNNRTG 2 cut(s) 249, 264
MspI CCGG 2 cut(s) 149, 369
MspR9I CCNGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 128
NaeI GCCGGC 1 cut(s) 370
NciI CCSGG 1 cut(s) 150
NdeII GATC 2 cut(s) 126, 478
NgoMIV GCCGGC 1 cut(s) 368
NlaIII CATG 5 cut(s) 228, 239, 248, 263, 347
NlaIV GGNNCC 3 cut(s) 121, 354, 471
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 173
NspV TTCGAA 1 cut(s) 65
PagI TCATGA 3 cut(s) 235, 244, 259
PdiI GCCGGC 1 cut(s) 370
PfeI GAWTC 2 cut(s) 188, 566
PkrI GCNGC 2 cut(s) 72, 97
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp1406I AACGTT 1 cut(s) 183
PspEI GGTNACC 1 cut(s) 173
PspN4I GGNNCC 3 cut(s) 121, 354, 471
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
RseI CAYNNNNRTG 2 cut(s) 249, 264
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 2 cut(s) 71, 96
Sau3AI GATC 2 cut(s) 126, 478
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 150
SfaNI GCATC 1 cut(s) 411
SfuI TTCGAA 1 cut(s) 65
SmiMI CAYNNNNRTG 2 cut(s) 249, 264
Sse9I AATT 2 cut(s) 166, 518
SsiI CCGC 3 cut(s) 70, 117, 445
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 3 cut(s) 186, 493, 576
TaqI TCGA 3 cut(s) 33, 65, 324
TasI AATT 2 cut(s) 166, 518
TatI WGTACW 1 cut(s) 498
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 2 cut(s) 188, 566
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 6 cut(s) 213, 224, 252, 276, 288, 494
XmiI GTMKAC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.