FvH4_3g25041

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001670
Physical Location & Seq
Forward (+)
18104027 .. 18104314
288 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25041.t1

Sequence Viewer

Length: 288 bp
ATGGCGACTGCAGTGGTGGCGGCGGCAGCCGATCCCATCCGTAAGCAATCCAGTCCGGGCCGGGGCGGGTACGAAGCCCACAGACTCTCCAAAGAAGAGGCCCGCGTCCGCGCCATAGCCGAAATTGTCGGCTCCATGGTCGACCTCTCCCGGCGAGGAGAAACCGTCGACCTAAACGCCCTCAAAACCGCCGCGTGCCGCAAGTACGGCCTCGCACATGCGCCGAAGCTGGTCGAGATGATCGCCGCGCTTCCGGAATGGACCGTGAGGCTCTGCTTCCGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

96

Amino Acids

10.26

Weight (kDa)

9.69

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELP3_N PF23613 36 - 86 4.1e-15 ELP3 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 141, 168
AccII CGCG 4 cut(s) 105, 111, 194, 248
AccIII TCCGGA 1 cut(s) 253
AciI CCGC 9 cut(s) 20, 23, 66, 103, 109, 189, 192, 199, 246
AclWI GGATC 1 cut(s) 26
AfaI GTAC 2 cut(s) 71, 206
AfiI CCNNNNNNNGG 1 cut(s) 62
AluBI AGCT 2 cut(s) 229, 285
AluI AGCT 2 cut(s) 229, 285
AlwI GGATC 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 3 cut(s) 58, 99, 208
ApeKI GCWGC 1 cut(s) 26
AspLEI GCGC 3 cut(s) 113, 223, 250
AspS9I GGNCC 3 cut(s) 58, 100, 261
AsuC2I CCSGG 3 cut(s) 57, 62, 151
AvaII GGWCC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 44
BceAI ACGGC 1 cut(s) 223
BcnI CCSGG 3 cut(s) 57, 62, 151
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 6 cut(s) 21, 24, 27, 192, 199, 246
BlsI GCNGC 6 cut(s) 22, 25, 28, 193, 200, 247
Bme1390I CCNGG 3 cut(s) 57, 62, 151
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 3 cut(s) 58, 100, 261
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 3 cut(s) 57, 62, 151
BpuMI CCSGG 3 cut(s) 57, 62, 151
BsaJI CCNNGG 2 cut(s) 61, 135
BsaWI WCCGGW 1 cut(s) 253
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 150, 180
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 61, 135
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 38
Bsh1236I CGCG 4 cut(s) 105, 111, 194, 248
BshFI GGCC 3 cut(s) 60, 101, 210
BsiSI CCGG 4 cut(s) 56, 61, 151, 254
BslI CCNNNNNNNGG 1 cut(s) 62
BsnI GGCC 3 cut(s) 60, 101, 210
Bsp13I TCCGGA 1 cut(s) 253
Bsp143I GATC 2 cut(s) 31, 240
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 9 cut(s) 20, 23, 66, 103, 109, 189, 192, 199, 246
BspANI GGCC 3 cut(s) 60, 101, 210
BspEI TCCGGA 1 cut(s) 253
BspFNI CGCG 4 cut(s) 105, 111, 194, 248
BspLI GGNNCC 1 cut(s) 133
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 61, 135
BssMI GATC 2 cut(s) 31, 240
BssT1I CCWWGG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 166, 265
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 103, 196
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 4 cut(s) 105, 111, 194, 248
BstHHI GCGC 3 cut(s) 113, 223, 250
BstKTI GATC 2 cut(s) 34, 243
BstMBI GATC 2 cut(s) 31, 240
BstMWI GCNNNNNNNGC 4 cut(s) 17, 26, 207, 282
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 3 cut(s) 55, 60, 149
BstSFI CTRYAG 1 cut(s) 9
BstUI CGCG 4 cut(s) 105, 111, 194, 248
BstV1I GCAGC 1 cut(s) 38
BsuRI GGCC 3 cut(s) 60, 101, 210
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 1 cut(s) 36
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 103, 196
CfoI GCGC 3 cut(s) 113, 223, 250
Cfr13I GGNCC 3 cut(s) 58, 100, 261
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 70, 205
CviAII CATG 2 cut(s) 136, 218
CviQI GTAC 2 cut(s) 70, 205
DpnI GATC 2 cut(s) 33, 242
DpnII GATC 2 cut(s) 31, 240
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 139, 221
FaiI YATR 3 cut(s) 116, 137, 219
FatI CATG 2 cut(s) 135, 217
FauI CCCGC 2 cut(s) 59, 110
FblI GTMKAC 2 cut(s) 141, 168
Fnu4HI GCNGC 6 cut(s) 21, 24, 27, 192, 199, 246
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 6 cut(s) 21, 24, 27, 192, 199, 246
GlaI GCGC 3 cut(s) 112, 222, 249
GluI GCNGC 6 cut(s) 21, 24, 27, 192, 199, 246
HaeIII GGCC 3 cut(s) 60, 101, 210
HapII CCGG 4 cut(s) 56, 61, 151, 254
HgaI GACGC 1 cut(s) 94
HhaI GCGC 3 cut(s) 113, 223, 250
Hin1II CATG 2 cut(s) 139, 221
Hin6I GCGC 3 cut(s) 111, 221, 248
HinP1I GCGC 3 cut(s) 111, 221, 248
HincII GTYRAC 2 cut(s) 142, 169
HindII GTYRAC 2 cut(s) 142, 169
HinfI GANTC 1 cut(s) 84
HpaII CCGG 4 cut(s) 56, 61, 151, 254
Hpy166II GTNNAC 2 cut(s) 142, 169
Hpy188I TCNGA 1 cut(s) 281
Hpy188III TCNNGA 2 cut(s) 235, 254
Hpy8I GTNNAC 2 cut(s) 142, 169
Hpy99I CGWCG 1 cut(s) 170
HpyCH4III ACNGT 2 cut(s) 166, 265
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 26, 207, 282
Hsp92II CATG 2 cut(s) 139, 221
HspAI GCGC 3 cut(s) 111, 221, 248
Kpn2I TCCGGA 1 cut(s) 253
Kzo9I GATC 2 cut(s) 31, 240
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 6 cut(s) 64, 69, 74, 164, 215, 267
Lsp1109I GCAGC 1 cut(s) 38
MalI GATC 2 cut(s) 33, 242
MboI GATC 2 cut(s) 31, 240
MboII GAAGA 1 cut(s) 107
MluCI AATT 1 cut(s) 123
MlyI GAGTC 1 cut(s) 78
MnlI CCTC 6 cut(s) 91, 149, 155, 191, 221, 261
MroI TCCGGA 1 cut(s) 253
MspI CCGG 4 cut(s) 56, 61, 151, 254
MspR9I CCNGG 3 cut(s) 57, 62, 151
MvnI CGCG 4 cut(s) 105, 111, 194, 248
MwoI GCNNNNNNNGC 4 cut(s) 17, 26, 207, 282
NciI CCSGG 3 cut(s) 57, 62, 151
NcoI CCATGG 1 cut(s) 135
NdeII GATC 2 cut(s) 31, 240
NlaIII CATG 2 cut(s) 139, 221
NlaIV GGNNCC 1 cut(s) 133
NspI RCATGY 1 cut(s) 221
PkrI GCNGC 6 cut(s) 22, 25, 28, 193, 200, 247
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 3 cut(s) 58, 100, 261
PstI CTGCAG 1 cut(s) 13
RsaI GTAC 2 cut(s) 71, 206
RsaNI GTAC 2 cut(s) 70, 205
SalI GTCGAC 2 cut(s) 140, 167
SatI GCNGC 6 cut(s) 21, 24, 27, 192, 199, 246
Sau3AI GATC 2 cut(s) 31, 240
Sau96I GGNCC 3 cut(s) 58, 100, 261
SchI GAGTC 1 cut(s) 78
ScrFI CCNGG 3 cut(s) 57, 62, 151
SetI ASST 4 cut(s) 147, 174, 231, 287
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 261
Sse9I AATT 1 cut(s) 123
SsiI CCGC 9 cut(s) 20, 23, 66, 103, 109, 189, 192, 199, 246
StyD4I CCNGG 3 cut(s) 55, 60, 149
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 166, 265
TaqI TCGA 3 cut(s) 141, 168, 234
TasI AATT 1 cut(s) 123
TauI GCSGC 5 cut(s) 23, 26, 194, 201, 248
TscAI CASTG 1 cut(s) 18
TseI GCWGC 1 cut(s) 26
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 261
XceI RCATGY 1 cut(s) 221
XmiI GTMKAC 2 cut(s) 141, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.