MD06G1155200.v1.1

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001670
Physical Location & Seq
Forward (+)
29788252 .. 29788841
590 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1155200.v1.1.491

Sequence Viewer

Length: 213 bp
ATGGTCCCCCCTTGGACGCGTGTTTATAGAGTTCAGCGAGACATTCCAATGCCTTTAGTTACTTCTGGGGTTGAGAAAGGAAATCTTCGGGAGTTAGCTTTGGCTTGGATGGAAGACCTGGGCTTGAAGTGCCGTGATGTTCGAACACGAGAGGCTGGAATTCAGGTATACACCAGGGGAGTTCCCGTTGCCTTCAGAAACGCGGTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

71

Amino Acids

7.99

Weight (kDa)

9.68

Isoelectric Point (pI)

19.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 168
AccII CGCG 2 cut(s) 19, 203
AciI CCGC 1 cut(s) 203
AcsI RAATTY 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 178
AflIII ACRYGT 1 cut(s) 17
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 2 cut(s) 117, 173
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 33
ApoI RAATTY 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 4
AsuII TTCGAA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 120
BccI CCATC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 2 cut(s) 119, 175
BcoDI GTCTC 1 cut(s) 33
Bme1390I CCNGG 2 cut(s) 119, 175
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 119, 175
BpiI GAAGAC 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 142
BsaJI CCNNGG 3 cut(s) 11, 118, 174
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
BseBI CCWGG 2 cut(s) 119, 175
BseDI CCNNGG 3 cut(s) 11, 118, 174
BseGI GGATG 1 cut(s) 114
Bsh1236I CGCG 2 cut(s) 19, 203
BsmAI GTCTC 1 cut(s) 33
Bsp119I TTCGAA 1 cut(s) 142
BspACI CCGC 1 cut(s) 203
BspFNI CGCG 2 cut(s) 19, 203
BspLI GGNNCC 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 142
BssECI CCNNGG 3 cut(s) 11, 118, 174
BssNAI GTATAC 1 cut(s) 169
BssSI CACGAG 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 11
Bst1107I GTATAC 1 cut(s) 169
Bst2BI CACGAG 1 cut(s) 147
Bst2UI CCWGG 2 cut(s) 119, 175
BstBI TTCGAA 1 cut(s) 142
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 2 cut(s) 19, 203
BstMAI GTCTC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNI CCWGG 2 cut(s) 119, 175
BstSCI CCNGG 2 cut(s) 117, 173
BstUI CGCG 2 cut(s) 19, 203
BstV2I GAAGAC 1 cut(s) 120
BstZ17I GTATAC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 25
CviJI RGCY 4 cut(s) 98, 104, 123, 155
CviKI_1 RGCY 4 cut(s) 98, 104, 123, 155
Eco130I CCWWGG 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 159
EcoRII CCWGG 2 cut(s) 117, 173
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaiI YATR 2 cut(s) 27, 169
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FblI GTMKAC 1 cut(s) 168
FokI GGATG 1 cut(s) 121
HgaI GACGC 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
LpnPI CCDG 7 cut(s) 51, 104, 131, 141, 149, 160, 187
MaeIII GTNAC 1 cut(s) 58
MboII GAAGA 2 cut(s) 77, 125
MluCI AATT 1 cut(s) 159
MluI ACGCGT 1 cut(s) 17
MnlI CCTC 1 cut(s) 145
MslI CAYNNNNRTG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 119, 175
MvaI CCWGG 2 cut(s) 119, 175
MvnI CGCG 2 cut(s) 19, 203
MwoI GCNNNNNNNGC 1 cut(s) 129
NlaIV GGNNCC 1 cut(s) 6
NspV TTCGAA 1 cut(s) 142
Psp6I CCWGG 2 cut(s) 117, 173
PspGI CCWGG 2 cut(s) 117, 173
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 47
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 119, 175
SetI ASST 3 cut(s) 100, 120, 168
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 159
SsiI CCGC 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 117, 173
StyI CCWWGG 1 cut(s) 11
TaqI TCGA 1 cut(s) 142
TasI AATT 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.