Rmu_co8234453.1_g000001

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8234453.1
OG0001670
Physical Location & Seq
Forward (+)
1 .. 719
719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8234453.1_g000001.1.cds

Sequence Viewer

Length: 423 bp
gctagaggcaggatagatcagctgaagcgattgggtcatagtgtagacaaggttgagtacatcttaatgggtggtacattcatgtcattgccagcagattaccgtgattactttattagaaatcttcatgacgcattatctggccacacttctgccaatgttgaagaggcagtcgcctactcggagcatggggctactaaatgtattgggatgaccattgaaacgaggccagattactgccttggacctcacttgagacaaatgcttacttatggttgtacacggttggagattggagttcagagtacatatgaagatgtggctcgtgacactaatagaggtcatacagtagctgcagtggctgattgtttctgcttggcaaaggatgctggtttcaaggttggtcctagtgccctatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

140

Amino Acids

15.36

Weight (kDa)

6.31

Isoelectric Point (pI)

29.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 4 cut(s) 59, 76, 280, 307
AgsI TTSAA 3 cut(s) 164, 221, 397
AluBI AGCT 2 cut(s) 22, 353
AluI AGCT 2 cut(s) 22, 353
Alw26I GTCTC 1 cut(s) 250
AlwNI CAGNNNCTG 2 cut(s) 353, 362
AoxI GGCC 2 cut(s) 142, 227
ApeKI GCWGC 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 245, 404
AvaII GGWCC 2 cut(s) 245, 404
BaeGI GKGCMC 1 cut(s) 415
BalI TGGCCA 1 cut(s) 144
BauI CACGAG 1 cut(s) 324
BbvI GCAGC 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 2 cut(s) 3, 408
BfmI CTRYAG 1 cut(s) 354
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
Bme18I GGWCC 2 cut(s) 245, 404
BmgT120I GGNCC 2 cut(s) 245, 404
BmsI GCATC 1 cut(s) 376
BpuEI CTTGAG 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 2 cut(s) 216, 391
BseMI GCAATG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 1 cut(s) 340
BshFI GGCC 2 cut(s) 144, 229
BsmAI GTCTC 1 cut(s) 250
BsnI GGCC 2 cut(s) 144, 229
Bsp1286I GDGCHC 1 cut(s) 415
Bsp1407I TGTACA 1 cut(s) 278
Bsp143I GATC 1 cut(s) 16
BspANI GGCC 2 cut(s) 144, 229
BspHI TCATGA 1 cut(s) 127
BspMAI CTGCAG 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 86
BsrGI TGTACA 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 16
BssSI CACGAG 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 324
Bst4CI ACNGT 3 cut(s) 104, 285, 349
Bst6I CTCTTC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 93
BstF5I GGATG 2 cut(s) 216, 391
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 359, 386
BstSFI CTRYAG 1 cut(s) 354
BstSLI GKGCMC 1 cut(s) 415
BstV1I GCAGC 1 cut(s) 340
BsuRI GGCC 2 cut(s) 144, 229
BtsCI GGATG 2 cut(s) 216, 391
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 93
CaiI CAGNNNCTG 2 cut(s) 353, 362
CciI TCATGA 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 245, 404
CseI GACGC 1 cut(s) 140
Csp6I GTAC 4 cut(s) 58, 75, 279, 306
CviAII CATG 3 cut(s) 82, 128, 188
CviJI RGCY 7 cut(s) 22, 144, 194, 229, 323, 353, 362
CviKI_1 RGCY 7 cut(s) 22, 144, 194, 229, 323, 353, 362
CviQI GTAC 4 cut(s) 58, 75, 279, 306
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 245, 404
Eco57I CTGAAG 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 85, 131, 191
FaiI YATR 9 cut(s) 39, 83, 129, 189, 273, 310, 312, 345, 421
FatI CATG 3 cut(s) 81, 127, 187
FauNDI CATATG 1 cut(s) 310
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 2 cut(s) 223, 398
Fsp4HI GCNGC 1 cut(s) 354
FspBI CTAG 2 cut(s) 3, 408
GluI GCNGC 1 cut(s) 354
HaeIII GGCC 2 cut(s) 144, 229
HgaI GACGC 1 cut(s) 140
Hin1II CATG 3 cut(s) 85, 131, 191
Hpy166II GTNNAC 2 cut(s) 46, 281
Hpy188I TCNGA 2 cut(s) 184, 303
Hpy188III TCNNGA 2 cut(s) 128, 326
Hpy8I GTNNAC 2 cut(s) 46, 281
HpyCH4III ACNGT 3 cut(s) 104, 285, 349
HpyCH4V TGCA 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 386
Hsp92II CATG 3 cut(s) 85, 131, 191
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 4 cut(s) 105, 126, 243, 375
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 3, 408
MaeIII GTNAC 1 cut(s) 326
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 3 cut(s) 116, 176, 326
MhlI GDGCHC 1 cut(s) 415
MlsI TGGCCA 1 cut(s) 144
MluNI TGGCCA 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 4 cut(s) 160, 219, 258, 332
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
MseI TTAA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 359, 386
NdeI CATATG 1 cut(s) 310
NdeII GATC 1 cut(s) 16
NlaIII CATG 3 cut(s) 85, 131, 191
NmuCI GTSAC 1 cut(s) 326
PagI TCATGA 1 cut(s) 127
PkrI GCNGC 1 cut(s) 355
PspPI GGNCC 2 cut(s) 245, 404
PstI CTGCAG 1 cut(s) 358
PstNI CAGNNNCTG 2 cut(s) 353, 362
PvuII CAGCTG 1 cut(s) 22
RsaI GTAC 4 cut(s) 59, 76, 280, 307
RsaNI GTAC 4 cut(s) 58, 75, 279, 306
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 2 cut(s) 245, 404
SduI GDGCHC 1 cut(s) 415
SetI ASST 6 cut(s) 24, 54, 250, 343, 355, 402
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 2 cut(s) 245, 404
SmiMI CAYNNNNRTG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SspMI CTAG 2 cut(s) 3, 408
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 3 cut(s) 104, 285, 349
TatI WGTACW 3 cut(s) 57, 278, 305
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 363
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 3 cut(s) 70, 116, 327
TspRI CASTG 1 cut(s) 363
VpaK11BI GGWCC 2 cut(s) 245, 404
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 2 cut(s) 3, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.