RLG00000036734

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001670
Physical Location & Seq
Forward (+)
83876235 .. 83877205
971 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036734

Sequence Viewer

Length: 402 bp
ATGGCATCCCAATTGGTCCACAGGATGCTTCACCATGGCTATTTGTTTATCCCAAAGGAATTAGAGACCTTTTACTCTACACAAAAACAAAGTATAGTGATCAACTTATTTACATTACTGAGAATGCAAGAACAGCCTCGCACATGCATCGAAATTGGTGGAGATGATTGCCGCGCTTCAGGAATGGGACTGCGAGGCTCTGCCCCCAAAGCTAAAAGCCAAGCCGGTCCGAACCGACTCCGGAATGCTGTTGTGGCTGTGATGTCGAAGCCTCATCGATGCCCTCACATCGCCACCACTGGAAATATTTGTGTGTTTTGCCCCGGTGGCCCCGACTCGGATTTTGAGTATAGTACTCAGTCTTATACTGGATACGAGCCTACTACCATGCGCGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

134

Amino Acids

14.79

Weight (kDa)

8.67

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 174, 393
AccIII TCCGGA 1 cut(s) 240
AciI CCGC 1 cut(s) 172
AcsI RAATTY 1 cut(s) 396
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 337
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 59
Aor13HI TCCGGA 1 cut(s) 240
AoxI GGCC 1 cut(s) 328
ApoI RAATTY 1 cut(s) 396
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 2 cut(s) 176, 393
AspS9I GGNCC 3 cut(s) 16, 227, 329
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 2 cut(s) 16, 227
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciVI GTATCC 1 cut(s) 365
BclI TGATCA 1 cut(s) 99
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 59
BfuI GTATCC 1 cut(s) 365
BglI GCCNNNNNGGC 1 cut(s) 327
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 2 cut(s) 16, 227
BmgT120I GGNCC 3 cut(s) 16, 227, 329
BmiI GGNNCC 1 cut(s) 331
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 4 cut(s) 14, 15, 156, 269
BpuMI CCSGG 1 cut(s) 324
Bsa29I ATCGAT 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 34, 322
BsaWI WCCGGW 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 2 cut(s) 304, 373
BseAI TCCGGA 1 cut(s) 240
BseCI ATCGAT 1 cut(s) 277
BseDI CCNNGG 2 cut(s) 34, 322
BseGI GGATG 2 cut(s) 5, 30
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 110, 371
BseNI ACTGG 2 cut(s) 304, 373
Bsh1236I CGCG 2 cut(s) 174, 393
BshFI GGCC 1 cut(s) 330
BshVI ATCGAT 1 cut(s) 277
BsiSI CCGG 3 cut(s) 225, 241, 324
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 201
BsmI GAATGC 2 cut(s) 129, 250
BsnI GGCC 1 cut(s) 330
Bso31I GGTCTC 1 cut(s) 59
Bsp13I TCCGGA 1 cut(s) 240
Bsp143I GATC 1 cut(s) 99
Bsp19I CCATGG 1 cut(s) 34
BspACI CCGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 2 cut(s) 111, 370
BspDI ATCGAT 1 cut(s) 277
BspEI TCCGGA 1 cut(s) 240
BspFNI CGCG 2 cut(s) 174, 393
BspLI GGNNCC 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 2 cut(s) 304, 373
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 34, 322
BssMI GATC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 34
BstDEI CTNAG 2 cut(s) 119, 357
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 2 cut(s) 5, 30
BstFNI CGCG 2 cut(s) 174, 393
BstHHI GCGC 2 cut(s) 176, 393
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 4 cut(s) 133, 209, 254, 327
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 322
BstUI CGCG 2 cut(s) 174, 393
Bsu15I ATCGAT 1 cut(s) 277
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 1 cut(s) 330
BsuTUI ATCGAT 1 cut(s) 277
BtgI CCRYGG 1 cut(s) 34
BtgZI GCGATG 1 cut(s) 274
BtsCI GGATG 2 cut(s) 5, 30
BtsIMutI CAGTG 1 cut(s) 297
CfoI GCGC 2 cut(s) 176, 393
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 3 cut(s) 16, 227, 329
ClaI ATCGAT 1 cut(s) 277
CpoI CGGWCCG 1 cut(s) 227
Csp6I GTAC 1 cut(s) 354
CspI CGGWCCG 1 cut(s) 227
CviAII CATG 3 cut(s) 35, 144, 388
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 2 cut(s) 119, 357
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 34
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 2 cut(s) 16, 227
Eco57I CTGAAG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 34
EcoT22I ATGCAT 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 3 cut(s) 38, 147, 391
FaiI YATR 6 cut(s) 36, 95, 145, 351, 366, 389
FaqI GGGAC 1 cut(s) 201
FatI CATG 3 cut(s) 34, 143, 387
FbaI TGATCA 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 172
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 1 cut(s) 172
GlaI GCGC 2 cut(s) 175, 392
GluI GCNGC 1 cut(s) 172
HaeIII GGCC 1 cut(s) 330
HapII CCGG 3 cut(s) 225, 241, 324
HhaI GCGC 2 cut(s) 176, 393
Hin1II CATG 3 cut(s) 38, 147, 391
Hin6I GCGC 2 cut(s) 174, 391
HinP1I GCGC 2 cut(s) 174, 391
HinfI GANTC 2 cut(s) 237, 335
HpaII CCGG 3 cut(s) 225, 241, 324
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 231, 340
Hpy188III TCNNGA 2 cut(s) 180, 241
Hpy8I GTNNAC 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 127, 147
HpyF10VI GCNNNNNNNGC 4 cut(s) 133, 209, 254, 327
HpyF3I CTNAG 2 cut(s) 119, 357
Hsp92II CATG 3 cut(s) 38, 147, 391
HspAI GCGC 2 cut(s) 174, 391
Kpn2I TCCGGA 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 7 cut(s) 7, 165, 238, 254, 285, 337, 354
LweI GCATC 4 cut(s) 14, 15, 156, 269
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MfeI CAATTG 1 cut(s) 11
MluCI AATT 4 cut(s) 11, 59, 153, 396
MlyI GAGTC 2 cut(s) 231, 329
MnlI CCTC 4 cut(s) 147, 188, 282, 294
Mph1103I ATGCAT 1 cut(s) 149
MroI TCCGGA 1 cut(s) 240
MspI CCGG 3 cut(s) 225, 241, 324
MspR9I CCNGG 1 cut(s) 324
MunI CAATTG 1 cut(s) 11
Mva1269I GAATGC 2 cut(s) 129, 250
MvnI CGCG 2 cut(s) 174, 393
MwoI GCNNNNNNNGC 4 cut(s) 133, 209, 254, 327
NciI CCSGG 1 cut(s) 324
NcoI CCATGG 1 cut(s) 34
NdeII GATC 1 cut(s) 99
NlaIII CATG 3 cut(s) 38, 147, 391
NlaIV GGNNCC 1 cut(s) 331
NsiI ATGCAT 1 cut(s) 149
NspI RCATGY 1 cut(s) 147
PctI GAATGC 2 cut(s) 129, 250
PkrI GCNGC 1 cut(s) 173
PleI GAGTC 2 cut(s) 231, 329
PpsI GAGTC 2 cut(s) 231, 329
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 3 cut(s) 16, 227, 329
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
Rsr2I CGGWCCG 1 cut(s) 227
RsrII CGGWCCG 1 cut(s) 227
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 3 cut(s) 16, 227, 329
ScaI AGTACT 1 cut(s) 355
SchI GAGTC 2 cut(s) 231, 329
ScrFI CCNGG 1 cut(s) 324
SetI ASST 2 cut(s) 71, 214
SfaNI GCATC 4 cut(s) 14, 15, 156, 269
SinI GGWCC 2 cut(s) 16, 227
Sse9I AATT 4 cut(s) 11, 59, 153, 396
SsiI CCGC 1 cut(s) 172
SspI AATATT 1 cut(s) 307
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 1 cut(s) 34
TaqI TCGA 3 cut(s) 150, 266, 277
TasI AATT 4 cut(s) 11, 59, 153, 396
TatI WGTACW 1 cut(s) 353
TauI GCSGC 1 cut(s) 174
TscAI CASTG 1 cut(s) 304
TspRI CASTG 1 cut(s) 304
VpaK11BI GGWCC 2 cut(s) 16, 227
XapI RAATTY 1 cut(s) 396
XceI RCATGY 1 cut(s) 147
ZrmI AGTACT 1 cut(s) 355
Zsp2I ATGCAT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.