Rmu_ssc0000172.1_g000023

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000172.1
OG0001670
Physical Location & Seq
Reverse (-)
110730 .. 111267
538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000172.1_g000023.1.cds

Sequence Viewer

Length: 381 bp
atggccatgtgccgcaagtacggcctcgcacgtgtgccgaagctggtggggatgatcgccgcgcttccagtattggactgcaaggttctgctccccaagctgaaagccaagcctcaccgaaccgcctctggaatcaccgtcgtggctgtggtgtcgaagcctcaccggtgccctcacatcgccaccatcgggaatatttgcgtgtactgccccgatagtttcgtattgagggaatgcgtagtccaccttgttcagaccttcgccggaggcgatggtgtcccgggccagttttatcagaaatgggccatccttccaggttgtcgagctaggcgtcagcgagaatcaggttcgaactctccggctgaggcgatttggacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

126

Amino Acids

13.7

Weight (kDa)

9.76

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 168
AccII CGCG 1 cut(s) 62
AciI CCGC 3 cut(s) 13, 60, 123
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 331
AfaI GTAC 2 cut(s) 20, 206
AfiI CCNNNNNNNGG 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 31
AgeI ACCGGT 1 cut(s) 165
AjnI CCWGG 1 cut(s) 313
AleI CACNNNNGTG 1 cut(s) 140
AluBI AGCT 3 cut(s) 43, 100, 326
AluI AGCT 3 cut(s) 43, 100, 326
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 4 cut(s) 3, 22, 283, 303
AsiGI ACCGGT 1 cut(s) 165
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 283, 303
AsuC2I CCSGG 2 cut(s) 281, 282
AsuHPI GGTGA 3 cut(s) 107, 127, 155
AsuII TTCGAA 1 cut(s) 350
AvaI CYCGRG 1 cut(s) 280
BaeGI GKGCMC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 168
BbrPI CACGTG 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 363
BccI CCATC 3 cut(s) 194, 266, 314
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 315
BcnI CCSGG 2 cut(s) 281, 282
BfaI CTAG 1 cut(s) 327
BisI GCNGC 2 cut(s) 13, 60
BlsI GCNGC 2 cut(s) 14, 61
Bme1390I CCNGG 3 cut(s) 281, 282, 315
BmeT110I CYCGRG 1 cut(s) 280
BmgT120I GGNCC 2 cut(s) 283, 303
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 3 cut(s) 281, 282, 315
Bpu10I CCTNAGC 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 281, 282
BsaAI YACGTR 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 331
BsaJI CCNNGG 1 cut(s) 280
BsaWI WCCGGW 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 2 cut(s) 68, 286
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 2 cut(s) 57, 306
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 2 cut(s) 68, 286
BseSI GKGCMC 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 4 cut(s) 5, 24, 285, 305
BshNI GGYRCC 1 cut(s) 168
BshTI ACCGGT 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 4 cut(s) 166, 264, 281, 359
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 263
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 4 cut(s) 5, 24, 285, 305
BsoBI CYCGRG 1 cut(s) 280
Bsp119I TTCGAA 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 3 cut(s) 13, 60, 123
BspANI GGCC 4 cut(s) 5, 24, 285, 305
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 170
BspT104I TTCGAA 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 2 cut(s) 68, 286
BssAI RCCGGY 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 139
BstACI GRCGYC 1 cut(s) 331
BstBAI YACGTR 1 cut(s) 32
BstBI TTCGAA 1 cut(s) 350
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 57, 306
BstFNI CGCG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 3 cut(s) 21, 97, 207
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 3 cut(s) 279, 280, 313
BstSLI GKGCMC 1 cut(s) 173
BstUI CGCG 1 cut(s) 62
BsuRI GGCC 4 cut(s) 5, 24, 285, 305
BtgZI GCGATG 2 cut(s) 163, 285
BtsCI GGATG 2 cut(s) 57, 306
CfoI GCGC 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 283, 303
Cfr9I CCCGGG 1 cut(s) 280
CseI GACGC 1 cut(s) 320
Csp6I GTAC 2 cut(s) 19, 205
CspAI ACCGGT 1 cut(s) 165
CviAII CATG 1 cut(s) 7
CviQI GTAC 2 cut(s) 19, 205
DdeI CTNAG 1 cut(s) 363
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 3
Eco72I CACGTG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 313
FaeI CATG 1 cut(s) 10
FaiI YATR 1 cut(s) 8
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 13, 60
FokI GGATG 2 cut(s) 64, 293
Fsp4HI GCNGC 2 cut(s) 13, 60
FspBI CTAG 1 cut(s) 327
GlaI GCGC 1 cut(s) 63
GluI GCNGC 2 cut(s) 13, 60
HaeIII GGCC 4 cut(s) 5, 24, 285, 305
HapII CCGG 4 cut(s) 166, 264, 281, 359
HgaI GACGC 1 cut(s) 320
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 331
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HinfI GANTC 2 cut(s) 132, 341
HpaII CCGG 4 cut(s) 166, 264, 281, 359
HphI GGTGA 3 cut(s) 107, 127, 155
Hpy166II GTNNAC 2 cut(s) 205, 244
Hpy188I TCNGA 2 cut(s) 255, 297
Hpy188III TCNNGA 2 cut(s) 129, 190
Hpy8I GTNNAC 2 cut(s) 205, 244
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 268, 320
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 97, 207
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 1 cut(s) 31
Hsp92I GRCGYC 1 cut(s) 331
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 54
LmnI GCTCC 1 cut(s) 96
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 31
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 173
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 8 cut(s) 35, 123, 136, 171, 183, 222, 260, 358
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 166, 264, 281, 359
MspR9I CCNGG 3 cut(s) 281, 282, 315
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 3 cut(s) 21, 97, 207
NciI CCSGG 2 cut(s) 281, 282
NdeII GATC 1 cut(s) 54
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 170
NspV TTCGAA 1 cut(s) 350
OliI CACNNNNGTG 1 cut(s) 140
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 328
PctI GAATGC 1 cut(s) 239
PfeI GAWTC 2 cut(s) 132, 341
PinAI ACCGGT 1 cut(s) 165
PkrI GCNGC 2 cut(s) 14, 61
PmaCI CACGTG 1 cut(s) 32
PmlI CACGTG 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 313
PspCI CACGTG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 2 cut(s) 283, 303
RsaI GTAC 2 cut(s) 20, 206
RsaNI GTAC 2 cut(s) 19, 205
RseI CAYNNNNRTG 1 cut(s) 140
SatI GCNGC 2 cut(s) 13, 60
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 2 cut(s) 283, 303
ScrFI CCNGG 3 cut(s) 281, 282, 315
SduI GDGCHC 1 cut(s) 173
SetI ASST 9 cut(s) 34, 45, 87, 102, 249, 260, 319, 328, 349
SfuI TTCGAA 1 cut(s) 350
SgrAI CRCCGGYG 1 cut(s) 165
SmaI CCCGGG 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 140
SsiI CCGC 3 cut(s) 13, 60, 123
SspI AATATT 1 cut(s) 196
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 3 cut(s) 279, 280, 313
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 34
TaqI TCGA 3 cut(s) 155, 322, 350
TatI WGTACW 1 cut(s) 204
TauI GCSGC 2 cut(s) 15, 62
TfiI GAWTC 2 cut(s) 132, 341
TspMI CCCGGG 1 cut(s) 280
XmaI CCCGGG 1 cut(s) 280
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.