Rh1BG014900

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001670
Physical Location & Seq
Forward (+)
2210050 .. 2210337
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG014900.1

Sequence Viewer

Length: 288 bp
ATGGCCGTGTGCCTCAAGTACGGCCTCGCACGTGCGCCGAAGCTGGTGGAGATGATCGCCGCGCTTCCTGAATCGGACCACGAGGCTCTACTCCTGAAGCTGAAAGCCAAGCCGGTCCAAACCACCTCTGGAATCACCGTCGTGGCCGTGATGTCGAAGCCTCACCGGTTCCCTCACATCGCCACCATCGGGAATATTTGCGTGTACTGCCCCGGTGGCCCCGACTTGAATTTTGAGTATAGTACTGGATACAAGCCTACTAGCATGCGCGCAATTCAAGTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

95

Amino Acids

10.33

Weight (kDa)

9.33

Isoelectric Point (pI)

25.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELP3_N PF23613 2 - 41 1.6e-12 ELP3 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 62, 270
AciI CCGC 1 cut(s) 60
AcoI YGGCCR 2 cut(s) 3, 144
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 116
AcvI CACGTG 1 cut(s) 32
AfaI GTAC 3 cut(s) 20, 206, 244
AfiI CCNNNNNNNGG 1 cut(s) 189
AgeI ACCGGT 1 cut(s) 165
AgsI TTSAA 2 cut(s) 229, 278
AleI CACNNNNGTG 1 cut(s) 140
AluBI AGCT 2 cut(s) 43, 100
AluI AGCT 2 cut(s) 43, 100
AoxI GGCC 4 cut(s) 3, 22, 144, 217
ApoI RAATTY 1 cut(s) 229
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AsiGI ACCGGT 1 cut(s) 165
AspLEI GCGC 4 cut(s) 37, 64, 270, 272
AspS9I GGNCC 3 cut(s) 76, 115, 218
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 127, 155
AvaII GGWCC 2 cut(s) 76, 115
BauI CACGAG 1 cut(s) 80
BbrPI CACGTG 1 cut(s) 32
BccI CCATC 1 cut(s) 194
BceAI ACGGC 2 cut(s) 37, 131
BciVI GTATCC 1 cut(s) 242
BcnI CCSGG 1 cut(s) 213
BfaI CTAG 1 cut(s) 261
BfuI GTATCC 1 cut(s) 242
BglI GCCNNNNNGGC 1 cut(s) 216
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 2 cut(s) 76, 115
BmgT120I GGNCC 3 cut(s) 76, 115, 218
BmiI GGNNCC 2 cut(s) 170, 220
BmrFI CCNGG 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 213
BsaAI YACGTR 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 211
BsaWI WCCGGW 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse118I RCCGGY 2 cut(s) 112, 165
Bse1I ACTGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 250
BsePI GCGCGC 1 cut(s) 268
Bsh1236I CGCG 2 cut(s) 62, 270
BshFI GGCC 4 cut(s) 5, 24, 146, 219
BshTI ACCGGT 1 cut(s) 165
BsiSI CCGG 3 cut(s) 113, 166, 213
BslI CCNNNNNNNGG 1 cut(s) 189
BsnI GGCC 4 cut(s) 5, 24, 146, 219
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 1 cut(s) 60
BspANI GGCC 4 cut(s) 5, 24, 146, 219
BspFNI CGCG 2 cut(s) 62, 270
BspLI GGNNCC 2 cut(s) 170, 220
BsrFI RCCGGY 2 cut(s) 112, 165
BsrI ACTGG 1 cut(s) 250
BssAI RCCGGY 2 cut(s) 112, 165
BssECI CCNNGG 1 cut(s) 211
BssHII GCGCGC 1 cut(s) 268
BssMI GATC 1 cut(s) 54
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 139
BstBAI YACGTR 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 266, 270
BstFNI CGCG 2 cut(s) 62, 270
BstHHI GCGC 4 cut(s) 37, 64, 270, 272
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 2 cut(s) 207, 216
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 211
BstUI CGCG 2 cut(s) 62, 270
BsuI GTATCC 1 cut(s) 242
BsuRI GGCC 4 cut(s) 5, 24, 146, 219
BtgZI GCGATG 1 cut(s) 163
Cac8I GCNNGC 2 cut(s) 266, 270
CfoI GCGC 4 cut(s) 37, 64, 270, 272
Cfr10I RCCGGY 2 cut(s) 112, 165
Cfr13I GGNCC 3 cut(s) 76, 115, 218
Csp6I GTAC 3 cut(s) 19, 205, 243
CspAI ACCGGT 1 cut(s) 165
CviAII CATG 1 cut(s) 265
CviQI GTAC 3 cut(s) 19, 205, 243
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EaeI YGGCCR 2 cut(s) 3, 144
Eco47I GGWCC 2 cut(s) 76, 115
Eco57I CTGAAG 1 cut(s) 116
Eco72I CACGTG 1 cut(s) 32
FaeI CATG 1 cut(s) 268
FaiI YATR 2 cut(s) 240, 266
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 261
GlaI GCGC 4 cut(s) 36, 63, 269, 271
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 4 cut(s) 5, 24, 146, 219
HapII CCGG 3 cut(s) 113, 166, 213
HhaI GCGC 4 cut(s) 37, 64, 270, 272
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 4 cut(s) 35, 62, 268, 270
HinP1I GCGC 4 cut(s) 35, 62, 268, 270
HinfI GANTC 2 cut(s) 71, 132
HpaII CCGG 3 cut(s) 113, 166, 213
HphI GGTGA 2 cut(s) 127, 155
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 4 cut(s) 68, 94, 129, 190
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 216
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 4 cut(s) 35, 62, 268, 270
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 9 cut(s) 29, 81, 107, 114, 126, 179, 226, 231, 268
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 31
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MluCI AATT 2 cut(s) 229, 273
MnlI CCTC 6 cut(s) 23, 35, 76, 136, 171, 183
MslI CAYNNNNRTG 1 cut(s) 140
MspI CCGG 3 cut(s) 113, 166, 213
MspR9I CCNGG 1 cut(s) 213
MvnI CGCG 2 cut(s) 62, 270
MwoI GCNNNNNNNGC 2 cut(s) 207, 216
NciI CCSGG 1 cut(s) 213
NdeII GATC 1 cut(s) 54
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 2 cut(s) 170, 220
NspI RCATGY 1 cut(s) 268
OliI CACNNNNGTG 1 cut(s) 140
PaeI GCATGC 1 cut(s) 268
PauI GCGCGC 1 cut(s) 268
PfeI GAWTC 2 cut(s) 71, 132
PinAI ACCGGT 1 cut(s) 165
PkrI GCNGC 1 cut(s) 61
PmaCI CACGTG 1 cut(s) 32
PmlI CACGTG 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 32
PspCI CACGTG 1 cut(s) 32
PspN4I GGNNCC 2 cut(s) 170, 220
PspPI GGNCC 3 cut(s) 76, 115, 218
PteI GCGCGC 1 cut(s) 268
RsaI GTAC 3 cut(s) 20, 206, 244
RsaNI GTAC 3 cut(s) 19, 205, 243
RseI CAYNNNNRTG 1 cut(s) 140
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 3 cut(s) 76, 115, 218
ScaI AGTACT 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 213
SetI ASST 5 cut(s) 34, 45, 102, 128, 287
SinI GGWCC 2 cut(s) 76, 115
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SphI GCATGC 1 cut(s) 268
Sse9I AATT 2 cut(s) 229, 273
SsiI CCGC 1 cut(s) 60
SspI AATATT 1 cut(s) 196
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 155
TasI AATT 2 cut(s) 229, 273
TatI WGTACW 2 cut(s) 204, 242
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 71, 132
VpaK11BI GGWCC 2 cut(s) 76, 115
XapI RAATTY 1 cut(s) 229
XceI RCATGY 1 cut(s) 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XspI CTAG 1 cut(s) 261
ZrmI AGTACT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.