MD06G1155000.v1.1

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001670
Physical Location & Seq
Forward (+)
29786846 .. 29787734
889 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1155000.v1.1.491

Sequence Viewer

Length: 384 bp
ATGTCGAAGCCTCATAGGTGCCCCCACATCGCCACCACCGGGAATATTTGCGTGTACTGCCCCGGTGGTTCCGATTCGGACTTTGAGTACAGCACTCAGTCTTACACTGGATACGAGCCTACTAGCATGCGCGCAATTTGGGCAGATACAACCCATATGTCCAGGCTAGAAGATCAGCTGAAGAGATTGGGTCACAGTGTAGACAAGGTCGAGTTCATCTTAATGGGCGGTACTTTCATGTCGTTGCCCGCAGATTACCGTGATTACTTTATTAGAAATCTGCACGATGCGTTATTGGGACACACTTCTGCCAATGTTGAAGAGGCAGTTGCCTACTCTGAGCATGGTGCTACTAAATTTCATCTGGTCGGTCCAGAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

128

Amino Acids

14.17

Weight (kDa)

5.67

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 201
AccII CGCG 1 cut(s) 132
AciI CCGC 2 cut(s) 228, 249
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 3 cut(s) 56, 89, 232
AfiI CCNNNNNNNGG 1 cut(s) 39
AgsI TTSAA 1 cut(s) 320
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
ApoI RAATTY 1 cut(s) 356
AspLEI GCGC 2 cut(s) 132, 134
AspS9I GGNCC 1 cut(s) 371
AsuC2I CCSGG 2 cut(s) 40, 63
AvaII GGWCC 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 163
BciVI GTATCC 1 cut(s) 104
BcnI CCSGG 2 cut(s) 40, 63
BfaI CTAG 2 cut(s) 123, 167
BfuI GTATCC 1 cut(s) 104
Bme1390I CCNGG 3 cut(s) 40, 63, 163
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 20, 70
BmrFI CCNGG 3 cut(s) 40, 63, 163
BmsI GCATC 1 cut(s) 277
BpuMI CCSGG 2 cut(s) 40, 63
BsaJI CCNNGG 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMII CTCAG 2 cut(s) 110, 330
BseNI ACTGG 1 cut(s) 112
BsePI GCGCGC 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 18
BsiSI CCGG 2 cut(s) 39, 63
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 2 cut(s) 228, 249
BspCNI CTCAG 2 cut(s) 109, 331
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 20, 70
BspT107I GGYRCC 1 cut(s) 18
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 61
BssHII GCGCGC 1 cut(s) 130
BssMI GATC 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 197, 260
Bst6I CTCTTC 2 cut(s) 176, 315
BstC8I GCNNGC 3 cut(s) 128, 132, 249
BstDEI CTNAG 2 cut(s) 96, 339
BstFNI CGCG 1 cut(s) 132
BstHHI GCGC 2 cut(s) 132, 134
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 2 cut(s) 57, 140
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 3 cut(s) 38, 61, 161
BstSLI GKGCMC 1 cut(s) 23
BstUI CGCG 1 cut(s) 132
BsuI GTATCC 1 cut(s) 104
BtgZI GCGATG 1 cut(s) 13
BtsIMutI CAGTG 2 cut(s) 105, 202
Cac8I GCNNGC 3 cut(s) 128, 132, 249
CfoI GCGC 2 cut(s) 132, 134
Cfr13I GGNCC 1 cut(s) 371
Csp6I GTAC 3 cut(s) 55, 88, 231
CviAII CATG 3 cut(s) 127, 238, 344
CviJI RGCY 4 cut(s) 10, 118, 166, 178
CviKI_1 RGCY 4 cut(s) 10, 118, 166, 178
CviQI GTAC 3 cut(s) 55, 88, 231
DdeI CTNAG 2 cut(s) 96, 339
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 176, 315
EarI CTCTTC 2 cut(s) 176, 315
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 161
FaeI CATG 3 cut(s) 130, 241, 347
FaiI YATR 6 cut(s) 15, 128, 156, 158, 239, 345
FaqI GGGAC 1 cut(s) 312
FatI CATG 3 cut(s) 126, 237, 343
FauI CCCGC 1 cut(s) 256
FauNDI CATATG 1 cut(s) 156
FblI GTMKAC 1 cut(s) 201
FspBI CTAG 2 cut(s) 123, 167
GlaI GCGC 2 cut(s) 131, 133
HapII CCGG 2 cut(s) 39, 63
HhaI GCGC 2 cut(s) 132, 134
Hin1II CATG 3 cut(s) 130, 241, 347
Hin6I GCGC 2 cut(s) 130, 132
HinP1I GCGC 2 cut(s) 130, 132
HinfI GANTC 1 cut(s) 74
HpaII CCGG 2 cut(s) 39, 63
Hpy166II GTNNAC 2 cut(s) 55, 202
Hpy188I TCNGA 3 cut(s) 73, 79, 340
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 2 cut(s) 55, 202
HpyCH4III ACNGT 2 cut(s) 197, 260
HpyCH4V TGCA 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 140
HpyF3I CTNAG 2 cut(s) 96, 339
Hsp92II CATG 3 cut(s) 130, 241, 347
HspAI GCGC 2 cut(s) 130, 132
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 6 cut(s) 52, 76, 93, 148, 175, 350
LweI GCATC 1 cut(s) 277
MaeI CTAG 2 cut(s) 123, 167
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 3 cut(s) 182, 193, 332
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 2 cut(s) 135, 356
MnlI CCTC 2 cut(s) 21, 316
MseI TTAA 2 cut(s) 221, 382
MslI CAYNNNNRTG 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 178
MspI CCGG 2 cut(s) 39, 63
MspR9I CCNGG 3 cut(s) 40, 63, 163
MvaI CCWGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 57, 140
NciI CCSGG 2 cut(s) 40, 63
NdeI CATATG 1 cut(s) 156
NdeII GATC 1 cut(s) 172
NlaIII CATG 3 cut(s) 130, 241, 347
NlaIV GGNNCC 2 cut(s) 20, 70
NmuCI GTSAC 1 cut(s) 191
NspI RCATGY 1 cut(s) 130
PaeI GCATGC 1 cut(s) 130
PauI GCGCGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 74
PflFI GACNNNGTC 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 20, 70
PspPI GGNCC 1 cut(s) 371
PsyI GACNNNGTC 1 cut(s) 206
PteI GCGCGC 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 178
RsaI GTAC 3 cut(s) 56, 89, 232
RsaNI GTAC 3 cut(s) 55, 88, 231
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 2 cut(s) 221, 382
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 40, 63, 163
SduI GDGCHC 1 cut(s) 23
SetI ASST 3 cut(s) 20, 180, 210
SfaNI GCATC 1 cut(s) 277
SinI GGWCC 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 221
SphI GCATGC 1 cut(s) 130
Sse9I AATT 2 cut(s) 135, 356
SsiI CCGC 2 cut(s) 228, 249
SspI AATATT 1 cut(s) 46
SspMI CTAG 2 cut(s) 123, 167
StyD4I CCNGG 3 cut(s) 38, 61, 161
TaaI ACNGT 2 cut(s) 197, 260
TaqI TCGA 2 cut(s) 5, 210
TaqII GACCGA 1 cut(s) 359
TasI AATT 2 cut(s) 135, 356
TatI WGTACW 2 cut(s) 54, 87
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 221, 382
Tru9I TTAA 2 cut(s) 221, 382
TscAI CASTG 2 cut(s) 112, 202
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 3 cut(s) 205, 226, 350
TspRI CASTG 2 cut(s) 112, 202
Tth111I GACNNNGTC 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 1 cut(s) 356
XceI RCATGY 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 2 cut(s) 123, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.