Rh5DG187900

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001670
Physical Location & Seq
Forward (+)
20874196 .. 20875763
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG187900.1

Sequence Viewer

Length: 528 bp
ATGGCCATGTGCCGCAAGTACGGCCTCGCACGTGTGCCAAAGCTGGTGGGGATGATCGCCGCGCTTCCGGAATTGGACTGCAAGGTTCTGCTCCCCAAGCTGAAAGCCAAGCCTCACCGAACCGCCTCTAGAATCACCGTCGTGGCTGTGATGTCGAAGCCTCACCGGTGCCCTCACATCGCCACCATCAGGAATATTTGTGTGTACTGCCCCGGTGGCCCCGATTCAGATTTTGAGCACAGTACTGGATACAAGTCTACTAGCATGCGCGCAATTCGAGCCAGACCTTCGCCGGAGGTGATGGTGTCCCGGGCCAGTTTTATCAGAAATGGGCCATCCTTCCGGGTTGTCGAGCTAGGTGTCGGCGAGAATCATGTTCGAACTCTCCGGCTGAGGCGATTTGGACTTGAACGGTATAGTTCATATTATTATAAAGGCAAGCTTGAGGATAAGTCCCACGGTTTCAGTCATTACCTAATGAACTTCGAAGAAGGGTTAGGCAACATTGCATTAAACCGGAATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

175

Amino Acids

19.74

Weight (kDa)

10.06

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELP3_N PF23613 2 - 42 2.6e-12 ELP3 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AccB1I GGYRCC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 257
AccII CGCG 2 cut(s) 62, 270
AccIII TCCGGA 1 cut(s) 67
AciI CCGC 3 cut(s) 13, 60, 123
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 32
AfaI GTAC 3 cut(s) 20, 206, 244
AfiI CCNNNNNNNGG 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 31
AgeI ACCGGT 1 cut(s) 165
AgsI TTSAA 1 cut(s) 410
AleI CACNNNNGTG 1 cut(s) 140
AluBI AGCT 4 cut(s) 43, 100, 355, 442
AluI AGCT 4 cut(s) 43, 100, 355, 442
Alw21I GWGCWC 1 cut(s) 240
Ama87I CYCGRG 1 cut(s) 309
Aor13HI TCCGGA 1 cut(s) 67
AoxI GGCC 5 cut(s) 3, 22, 217, 312, 332
AsiGI ACCGGT 1 cut(s) 165
AspLEI GCGC 3 cut(s) 64, 270, 272
AspS9I GGNCC 3 cut(s) 218, 312, 332
AsuC2I CCSGG 4 cut(s) 213, 310, 311, 344
AsuHPI GGTGA 4 cut(s) 107, 127, 155, 310
AsuII TTCGAA 2 cut(s) 379, 486
AvaI CYCGRG 1 cut(s) 309
BaeGI GKGCMC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 168
BbrPI CACGTG 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 240
BbvCI CCTCAGC 1 cut(s) 392
BccI CCATC 3 cut(s) 194, 295, 343
BceAI ACGGC 1 cut(s) 37
BciVI GTATCC 1 cut(s) 242
BcnI CCSGG 4 cut(s) 213, 310, 311, 344
BfaI CTAG 3 cut(s) 129, 261, 356
BfuI GTATCC 1 cut(s) 242
BglI GCCNNNNNGGC 1 cut(s) 216
BisI GCNGC 2 cut(s) 13, 60
BlsI GCNGC 2 cut(s) 14, 61
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 4 cut(s) 213, 310, 311, 344
BmeT110I CYCGRG 1 cut(s) 309
BmgT120I GGNCC 3 cut(s) 218, 312, 332
BmiI GGNNCC 2 cut(s) 170, 220
BmrFI CCNGG 4 cut(s) 213, 310, 311, 344
Bpu10I CCTNAGC 1 cut(s) 392
Bpu14I TTCGAA 2 cut(s) 379, 486
BpuEI CTTGAG 1 cut(s) 464
BpuMI CCSGG 4 cut(s) 213, 310, 311, 344
BsaAI YACGTR 1 cut(s) 32
BsaJI CCNNGG 3 cut(s) 211, 309, 457
BsaWI WCCGGW 3 cut(s) 67, 165, 516
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 2 cut(s) 250, 315
Bse3DI GCAATG 1 cut(s) 504
BseAI TCCGGA 1 cut(s) 67
BseDI CCNNGG 3 cut(s) 211, 309, 457
BseGI GGATG 2 cut(s) 57, 335
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 2 cut(s) 250, 315
BsePI GCGCGC 1 cut(s) 268
BseSI GKGCMC 1 cut(s) 173
Bsh1236I CGCG 2 cut(s) 62, 270
BshFI GGCC 5 cut(s) 5, 24, 219, 314, 334
BshNI GGYRCC 1 cut(s) 168
BshTI ACCGGT 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 309
BsiSI CCGG 8 cut(s) 68, 166, 213, 293, 310, 343, 388, 517
BslFI GGGAC 2 cut(s) 292, 439
BslI CCNNNNNNNGG 1 cut(s) 189
BsmFI GGGAC 2 cut(s) 292, 439
BsnI GGCC 5 cut(s) 5, 24, 219, 314, 334
BsoBI CYCGRG 1 cut(s) 309
Bsp119I TTCGAA 2 cut(s) 379, 486
Bsp1286I GDGCHC 2 cut(s) 173, 240
Bsp13I TCCGGA 1 cut(s) 67
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 3 cut(s) 13, 60, 123
BspANI GGCC 5 cut(s) 5, 24, 219, 314, 334
BspCNI CTCAG 1 cut(s) 384
BspEI TCCGGA 1 cut(s) 67
BspFNI CGCG 2 cut(s) 62, 270
BspLI GGNNCC 2 cut(s) 170, 220
BspT104I TTCGAA 2 cut(s) 379, 486
BspT107I GGYRCC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 504
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 2 cut(s) 250, 315
BssAI RCCGGY 1 cut(s) 165
BssECI CCNNGG 3 cut(s) 211, 309, 457
BssHII GCGCGC 1 cut(s) 268
BssMI GATC 1 cut(s) 54
Bst4CI ACNGT 4 cut(s) 139, 242, 414, 461
BstBAI YACGTR 1 cut(s) 32
BstBI TTCGAA 2 cut(s) 379, 486
BstC8I GCNNGC 3 cut(s) 266, 270, 440
BstDEI CTNAG 1 cut(s) 392
BstDSI CCRYGG 1 cut(s) 457
BstF5I GGATG 2 cut(s) 57, 335
BstFNI CGCG 2 cut(s) 62, 270
BstHHI GCGC 3 cut(s) 64, 270, 272
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 4 cut(s) 21, 97, 216, 278
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 4 cut(s) 211, 308, 309, 342
BstSLI GKGCMC 1 cut(s) 173
BstUI CGCG 2 cut(s) 62, 270
BsuI GTATCC 1 cut(s) 242
BsuRI GGCC 5 cut(s) 5, 24, 219, 314, 334
BtgI CCRYGG 1 cut(s) 457
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 57, 335
Cac8I GCNNGC 3 cut(s) 266, 270, 440
CfoI GCGC 3 cut(s) 64, 270, 272
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 3 cut(s) 218, 312, 332
Cfr9I CCCGGG 1 cut(s) 309
Csp6I GTAC 3 cut(s) 19, 205, 243
CspAI ACCGGT 1 cut(s) 165
CspCI CAANNNNNGTGG 2 cut(s) 27, 62
CviAII CATG 3 cut(s) 7, 265, 374
CviQI GTAC 3 cut(s) 19, 205, 243
DdeI CTNAG 1 cut(s) 392
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 3
Eco72I CACGTG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 309
FaeI CATG 3 cut(s) 10, 268, 377
FaiI YATR 6 cut(s) 8, 266, 375, 417, 424, 432
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 2 cut(s) 292, 439
FatI CATG 3 cut(s) 6, 264, 373
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 13, 60
FokI GGATG 2 cut(s) 64, 322
Fsp4HI GCNGC 2 cut(s) 13, 60
FspBI CTAG 3 cut(s) 129, 261, 356
GlaI GCGC 3 cut(s) 63, 269, 271
GluI GCNGC 2 cut(s) 13, 60
HaeIII GGCC 5 cut(s) 5, 24, 219, 314, 334
HapII CCGG 8 cut(s) 68, 166, 213, 293, 310, 343, 388, 517
HhaI GCGC 3 cut(s) 64, 270, 272
Hin1II CATG 3 cut(s) 10, 268, 377
Hin6I GCGC 3 cut(s) 62, 268, 270
HinP1I GCGC 3 cut(s) 62, 268, 270
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 3 cut(s) 132, 224, 370
HpaII CCGG 8 cut(s) 68, 166, 213, 293, 310, 343, 388, 517
HphI GGTGA 4 cut(s) 107, 127, 155, 310
Hpy166II GTNNAC 2 cut(s) 205, 258
Hpy188I TCNGA 2 cut(s) 229, 326
Hpy188III TCNNGA 3 cut(s) 68, 129, 190
Hpy8I GTNNAC 2 cut(s) 205, 258
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 3 cut(s) 297, 349, 485
HpyCH4III ACNGT 4 cut(s) 139, 242, 414, 461
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 81, 509
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 97, 216, 278
HpyF3I CTNAG 1 cut(s) 392
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 3 cut(s) 10, 268, 377
HspAI GCGC 3 cut(s) 62, 268, 270
Kpn2I TCCGGA 1 cut(s) 67
Kzo9I GATC 1 cut(s) 54
LmnI GCTCC 1 cut(s) 96
MaeI CTAG 3 cut(s) 129, 261, 356
MaeII ACGT 1 cut(s) 31
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 1 cut(s) 500
MhlI GDGCHC 2 cut(s) 173, 240
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 71, 273
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 8 cut(s) 35, 123, 136, 171, 183, 289, 387, 439
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 67
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 512, 526
MslI CAYNNNNRTG 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 8 cut(s) 68, 166, 213, 293, 310, 343, 388, 517
MspR9I CCNGG 4 cut(s) 213, 310, 311, 344
MvnI CGCG 2 cut(s) 62, 270
MwoI GCNNNNNNNGC 4 cut(s) 21, 97, 216, 278
NciI CCSGG 4 cut(s) 213, 310, 311, 344
NdeII GATC 1 cut(s) 54
NlaIII CATG 3 cut(s) 10, 268, 377
NlaIV GGNNCC 2 cut(s) 170, 220
NspI RCATGY 1 cut(s) 268
NspV TTCGAA 2 cut(s) 379, 486
OliI CACNNNNGTG 1 cut(s) 140
PaeI GCATGC 1 cut(s) 268
PauI GCGCGC 1 cut(s) 268
PfeI GAWTC 3 cut(s) 132, 224, 370
PinAI ACCGGT 1 cut(s) 165
PkrI GCNGC 2 cut(s) 14, 61
PmaCI CACGTG 1 cut(s) 32
PmlI CACGTG 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 32
PsiI TTATAA 1 cut(s) 432
PspCI CACGTG 1 cut(s) 32
PspN4I GGNNCC 2 cut(s) 170, 220
PspPI GGNCC 3 cut(s) 218, 312, 332
PteI GCGCGC 1 cut(s) 268
RsaI GTAC 3 cut(s) 20, 206, 244
RsaNI GTAC 3 cut(s) 19, 205, 243
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 2 cut(s) 512, 526
SatI GCNGC 2 cut(s) 13, 60
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 3 cut(s) 218, 312, 332
ScaI AGTACT 1 cut(s) 244
ScrFI CCNGG 4 cut(s) 213, 310, 311, 344
SduI GDGCHC 2 cut(s) 173, 240
SfuI TTCGAA 2 cut(s) 379, 486
SgrAI CRCCGGYG 1 cut(s) 165
SmaI CCCGGG 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
SphI GCATGC 1 cut(s) 268
Sse9I AATT 2 cut(s) 71, 273
SsiI CCGC 3 cut(s) 13, 60, 123
SspI AATATT 2 cut(s) 196, 523
SspMI CTAG 3 cut(s) 129, 261, 356
StyD4I CCNGG 4 cut(s) 211, 308, 309, 342
TaaI ACNGT 4 cut(s) 139, 242, 414, 461
TaiI ACGT 1 cut(s) 34
TaqI TCGA 5 cut(s) 155, 277, 351, 379, 486
TasI AATT 2 cut(s) 71, 273
TatI WGTACW 2 cut(s) 204, 242
TauI GCSGC 2 cut(s) 15, 62
TfiI GAWTC 3 cut(s) 132, 224, 370
Tru1I TTAA 2 cut(s) 512, 526
Tru9I TTAA 2 cut(s) 512, 526
TspDTI ATGAA 2 cut(s) 411, 494
TspMI CCCGGG 1 cut(s) 309
XbaI TCTAGA 1 cut(s) 128
XceI RCATGY 1 cut(s) 268
XmaI CCCGGG 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 3 cut(s) 129, 261, 356
ZrmI AGTACT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.