MD06G1152100.v1.1

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001670
Physical Location & Seq
Forward (+)
29587919 .. 29588121
203 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1152100.v1.1.491

Sequence Viewer

Length: 183 bp
ATGAATACTACGGTGCTGCCAGTATCCGAGCCCGCCAGAAAGCAACCCCGACCTGGTCGGGGCAGATTCGAGGCCCATGGACTATCCGAAGAAGAGGCCCGGGTCAGGGCCATCGCCGAAATCGTCAGCTCCATGGTCAACCTCTCCCGAAAGGACCAAAACGTCGACCTAAACGCCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

61

Amino Acids

6.64

Weight (kDa)

8.36

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 165
AciI CCGC 1 cut(s) 33
AfiI CCNNNNNNNGG 4 cut(s) 53, 59, 105, 106
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 3 cut(s) 72, 96, 108
ApeKI GCWGC 1 cut(s) 16
AspS9I GGNCC 4 cut(s) 73, 97, 108, 154
AsuC2I CCSGG 2 cut(s) 100, 101
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 3
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 54
BciVI GTATCC 1 cut(s) 34
BcnI CCSGG 2 cut(s) 100, 101
BfaI CTAG 1 cut(s) 181
BfuI GTATCC 1 cut(s) 34
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 3 cut(s) 54, 100, 101
Bme18I GGWCC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 99
BmgT120I GGNCC 4 cut(s) 73, 97, 108, 154
BmrFI CCNGG 3 cut(s) 54, 100, 101
BpuMI CCSGG 2 cut(s) 100, 101
BsaJI CCNNGG 3 cut(s) 76, 99, 132
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 59, 105, 106
Bse1I ACTGG 1 cut(s) 20
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 3 cut(s) 76, 99, 132
BseLI CCNNNNNNNGG 4 cut(s) 53, 59, 105, 106
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 3
BshFI GGCC 3 cut(s) 74, 98, 110
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 1 cut(s) 100
BslI CCNNNNNNNGG 4 cut(s) 53, 59, 105, 106
BsnI GGCC 3 cut(s) 74, 98, 110
BsoBI CYCGRG 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 33
Bsp19I CCATGG 2 cut(s) 76, 132
BspACI CCGC 1 cut(s) 33
BspANI GGCC 3 cut(s) 74, 98, 110
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 3 cut(s) 76, 99, 132
BssT1I CCWWGG 2 cut(s) 76, 132
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 33
BstDSI CCRYGG 2 cut(s) 76, 132
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 3 cut(s) 52, 98, 99
BstV1I GCAGC 1 cut(s) 3
BsuI GTATCC 1 cut(s) 34
BsuRI GGCC 3 cut(s) 74, 98, 110
BtgI CCRYGG 2 cut(s) 76, 132
BtgZI GCGATG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 33
Cfr13I GGNCC 4 cut(s) 73, 97, 108, 154
Cfr9I CCCGGG 1 cut(s) 99
CsiI ACCWGGT 1 cut(s) 52
CviAII CATG 2 cut(s) 77, 133
CviJI RGCY 5 cut(s) 31, 74, 98, 110, 129
CviKI_1 RGCY 5 cut(s) 31, 74, 98, 110, 129
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 2 cut(s) 76, 132
Eco24I GRGCYC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 76, 132
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 2 cut(s) 76, 132
FaeI CATG 2 cut(s) 80, 136
FaiI YATR 2 cut(s) 78, 134
FatI CATG 2 cut(s) 76, 132
FauI CCCGC 1 cut(s) 40
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 17
FspBI CTAG 1 cut(s) 181
GluI GCNGC 1 cut(s) 17
HaeIII GGCC 3 cut(s) 74, 98, 110
HapII CCGG 1 cut(s) 100
Hin1II CATG 2 cut(s) 80, 136
HincII GTYRAC 2 cut(s) 139, 166
HindII GTYRAC 2 cut(s) 139, 166
HinfI GANTC 1 cut(s) 66
HpaII CCGG 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 139, 166
Hpy188I TCNGA 2 cut(s) 28, 88
Hpy188III TCNNGA 1 cut(s) 147
Hpy8I GTNNAC 2 cut(s) 139, 166
Hpy99I CGWCG 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 80, 136
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 6 cut(s) 33, 39, 49, 66, 91, 113
Lsp1109I GCAGC 1 cut(s) 3
MabI ACCWGGT 1 cut(s) 52
MaeI CTAG 1 cut(s) 181
MaeII ACGT 1 cut(s) 162
MboII GAAGA 2 cut(s) 101, 104
MhlI GDGCHC 1 cut(s) 33
MnlI CCTC 3 cut(s) 64, 88, 152
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 3 cut(s) 54, 100, 101
MvaI CCWGG 1 cut(s) 54
NciI CCSGG 2 cut(s) 100, 101
NcoI CCATGG 2 cut(s) 76, 132
NlaIII CATG 2 cut(s) 80, 136
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 54
PkrI GCNGC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspPI GGNCC 4 cut(s) 73, 97, 108, 154
PsyI GACNNNGTC 1 cut(s) 54
SalI GTCGAC 1 cut(s) 164
SatI GCNGC 1 cut(s) 17
Sau96I GGNCC 4 cut(s) 73, 97, 108, 154
ScrFI CCNGG 3 cut(s) 54, 100, 101
SduI GDGCHC 1 cut(s) 33
SetI ASST 5 cut(s) 55, 131, 144, 165, 171
SexAI ACCWGGT 1 cut(s) 52
SinI GGWCC 1 cut(s) 154
SmaI CCCGGG 1 cut(s) 101
SsiI CCGC 1 cut(s) 33
SspMI CTAG 1 cut(s) 181
StyD4I CCNGG 3 cut(s) 52, 98, 99
StyI CCWWGG 2 cut(s) 76, 132
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 69, 165
TfiI GAWTC 1 cut(s) 66
TseI GCWGC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 99
Tth111I GACNNNGTC 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 154
XmaI CCCGGG 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.