Rh4CG251200

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001670
Physical Location & Seq
Forward (+)
50118088 .. 50118426
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG251200.1

Sequence Viewer

Length: 339 bp
ATGGTCGACCTCTCCCGGCGAGGCCAAAACGTCGACCTAAACGCCCTCAAAACGGCCGTGTGCCTCAAGTACGGCCTCACACATGCGCCGAAGCTGGTGGAGATGATCGCTGCGCTTCCTGAATCGGGCCACGAGGCTCTGCTCCTTAAGCTGAAAGCCAAGCCAGTCCAAACCACCTTCGGAATCACCGTCGTGGCCGTGATGTCGAAGGCTCATCGGTTCCCTCACATCACCACCATCGGGAATATTTGCGTGTACTGCCCCGGTGGCCCCGACTTGGATTTTGAGTACAGTACTAGATACAAGCCTACTAGCATGCGCGCAATTCGAGTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

112

Amino Acids

12.35

Weight (kDa)

9.62

Isoelectric Point (pI)

27.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELP3_N PF23613 2 - 58 1.5e-17 ELP3 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 6, 33
AccII CGCG 1 cut(s) 321
AcoI YGGCCR 2 cut(s) 54, 195
AfaI GTAC 4 cut(s) 71, 257, 290, 295
AfiI CCNNNNNNNGG 4 cut(s) 52, 125, 240, 277
AflII CTTAAG 1 cut(s) 146
AleI CACNNNNGTG 1 cut(s) 191
AluBI AGCT 2 cut(s) 94, 151
AluI AGCT 2 cut(s) 94, 151
AoxI GGCC 6 cut(s) 22, 54, 73, 127, 195, 268
ApeKI GCWGC 1 cut(s) 110
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AspLEI GCGC 4 cut(s) 88, 115, 321, 323
AspS9I GGNCC 2 cut(s) 127, 269
AsuC2I CCSGG 2 cut(s) 16, 264
AsuHPI GGTGA 2 cut(s) 178, 223
BauI CACGAG 1 cut(s) 131
BbvI GCAGC 1 cut(s) 97
BccI CCATC 1 cut(s) 245
BceAI ACGGC 4 cut(s) 41, 69, 88, 182
BcnI CCSGG 2 cut(s) 16, 264
BfaI CTAG 2 cut(s) 297, 312
BfrI CTTAAG 1 cut(s) 146
BglI GCCNNNNNGGC 1 cut(s) 267
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmcAI AGTACT 1 cut(s) 295
Bme1390I CCNGG 2 cut(s) 16, 264
BmgT120I GGNCC 2 cut(s) 127, 269
BmiI GGNNCC 2 cut(s) 221, 271
BmrFI CCNGG 2 cut(s) 16, 264
BpuEI CTTGAG 1 cut(s) 50
BpuMI CCSGG 2 cut(s) 16, 264
BsaJI CCNNGG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 125, 240, 277
Bse1I ACTGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 262
BseLI CCNNNNNNNGG 4 cut(s) 52, 125, 240, 277
BseNI ACTGG 1 cut(s) 164
BsePI GCGCGC 1 cut(s) 319
BseX3I CGGCCG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 321
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 6 cut(s) 24, 56, 75, 129, 197, 270
BsiEI CGRYCG 1 cut(s) 57
BsiSI CCGG 2 cut(s) 16, 264
BslI CCNNNNNNNGG 4 cut(s) 52, 125, 240, 277
BsnI GGCC 6 cut(s) 24, 56, 75, 129, 197, 270
Bsp143I GATC 1 cut(s) 105
BspANI GGCC 6 cut(s) 24, 56, 75, 129, 197, 270
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 2 cut(s) 221, 271
BspTI CTTAAG 1 cut(s) 146
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 262
BssHII GCGCGC 1 cut(s) 319
BssMI GATC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 190, 293
BstAFI CTTAAG 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 317, 321
BstFNI CGCG 1 cut(s) 321
BstHHI GCGC 4 cut(s) 88, 115, 321, 323
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 3 cut(s) 148, 258, 267
BstNSI RCATGY 2 cut(s) 86, 319
BstSCI CCNGG 2 cut(s) 14, 262
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 97
BstZI CGGCCG 1 cut(s) 54
BsuRI GGCC 6 cut(s) 24, 56, 75, 129, 197, 270
Cac8I GCNNGC 2 cut(s) 317, 321
CfoI GCGC 4 cut(s) 88, 115, 321, 323
Cfr13I GGNCC 2 cut(s) 127, 269
Csp6I GTAC 4 cut(s) 70, 256, 289, 294
CviAII CATG 2 cut(s) 83, 316
CviQI GTAC 4 cut(s) 70, 256, 289, 294
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
EaeI YGGCCR 2 cut(s) 54, 195
EagI CGGCCG 1 cut(s) 54
EclXI CGGCCG 1 cut(s) 54
Eco52I CGGCCG 1 cut(s) 54
FaeI CATG 2 cut(s) 86, 319
FaiI YATR 2 cut(s) 84, 317
FatI CATG 2 cut(s) 82, 315
FblI GTMKAC 2 cut(s) 6, 33
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 2 cut(s) 297, 312
GlaI GCGC 4 cut(s) 87, 114, 320, 322
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 6 cut(s) 24, 56, 75, 129, 197, 270
HapII CCGG 2 cut(s) 16, 264
HhaI GCGC 4 cut(s) 88, 115, 321, 323
Hin1II CATG 2 cut(s) 86, 319
Hin6I GCGC 4 cut(s) 86, 113, 319, 321
HinP1I GCGC 4 cut(s) 86, 113, 319, 321
HincII GTYRAC 2 cut(s) 7, 34
HindII GTYRAC 2 cut(s) 7, 34
HinfI GANTC 3 cut(s) 122, 183, 330
HpaII CCGG 2 cut(s) 16, 264
HphI GGTGA 2 cut(s) 178, 223
Hpy166II GTNNAC 3 cut(s) 7, 34, 256
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 2 cut(s) 119, 241
Hpy8I GTNNAC 3 cut(s) 7, 34, 256
Hpy99I CGWCG 2 cut(s) 35, 194
HpyAV CCTTC 2 cut(s) 187, 202
HpyCH4III ACNGT 2 cut(s) 190, 293
HpyCH4IV ACGT 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 258, 267
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 2 cut(s) 86, 319
HspAI GCGC 4 cut(s) 86, 113, 319, 321
Kzo9I GATC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 6 cut(s) 29, 80, 132, 177, 277, 319
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 2 cut(s) 297, 312
MaeII ACGT 1 cut(s) 30
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MluCI AATT 1 cut(s) 324
MlyI GAGTC 1 cut(s) 339
MnlI CCTC 7 cut(s) 14, 20, 56, 74, 86, 127, 234
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 191
MspCI CTTAAG 1 cut(s) 146
MspI CCGG 2 cut(s) 16, 264
MspR9I CCNGG 2 cut(s) 16, 264
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 3 cut(s) 148, 258, 267
NciI CCSGG 2 cut(s) 16, 264
NdeII GATC 1 cut(s) 105
NlaIII CATG 2 cut(s) 86, 319
NlaIV GGNNCC 2 cut(s) 221, 271
NspI RCATGY 2 cut(s) 86, 319
OliI CACNNNNGTG 1 cut(s) 191
PaeI GCATGC 1 cut(s) 319
PauI GCGCGC 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 2 cut(s) 122, 183
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PspN4I GGNNCC 2 cut(s) 221, 271
PspPI GGNCC 2 cut(s) 127, 269
PteI GCGCGC 1 cut(s) 319
RsaI GTAC 4 cut(s) 71, 257, 290, 295
RsaNI GTAC 4 cut(s) 70, 256, 289, 294
RseI CAYNNNNRTG 1 cut(s) 191
SalI GTCGAC 2 cut(s) 5, 32
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 105
Sau96I GGNCC 2 cut(s) 127, 269
ScaI AGTACT 1 cut(s) 295
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 2 cut(s) 16, 264
SetI ASST 7 cut(s) 12, 33, 39, 96, 153, 179, 338
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 2 cut(s) 65, 146
SmoI CTYRAG 2 cut(s) 65, 146
SphI GCATGC 1 cut(s) 319
Sse9I AATT 1 cut(s) 324
SspI AATATT 1 cut(s) 247
SspMI CTAG 2 cut(s) 297, 312
StyD4I CCNGG 2 cut(s) 14, 262
TaaI ACNGT 2 cut(s) 190, 293
TaiI ACGT 1 cut(s) 33
TaqI TCGA 4 cut(s) 6, 33, 206, 328
TasI AATT 1 cut(s) 324
TatI WGTACW 3 cut(s) 255, 288, 293
TfiI GAWTC 2 cut(s) 122, 183
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseI GCWGC 1 cut(s) 110
Vha464I CTTAAG 1 cut(s) 146
XceI RCATGY 2 cut(s) 86, 319
XmiI GTMKAC 2 cut(s) 6, 33
XspI CTAG 2 cut(s) 297, 312
ZrmI AGTACT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.