RchiOBHm_Chr5g0026811

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001670
Physical Location & Seq
Forward (+)
20825495 .. 20826234
740 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30639

Sequence Viewer

Length: 288 bp
ATGGCCATGTGCCGCAAGTACGGCCTCGCACGTGTGCCAAAGCTGGTGGGGATGATCGCCGCGCTTCCGGAATTGGACTGCAAGGTTCTGCTCCCCAAGCTGAAAGCCAAGCCTCACCGAACCGCCTCTAGAATCACCGTCGTGGCTGTGATGTCGAAGCCTCACCGGTGCCCTCACATCGCCACCATCAGGAATATTTGTGTGTACTGCCCCGGTGGCCCCGATTCAGATTTTGAGCACAGTACTGGATACAAGTCTACTAGCATGCGCGCAATTCGAGCCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

95

Amino Acids

10.49

Weight (kDa)

10.12

Isoelectric Point (pI)

30.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELP3_N PF23613 2 - 42 7.5e-13 ELP3 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 257
AccII CGCG 2 cut(s) 62, 270
AccIII TCCGGA 1 cut(s) 67
AciI CCGC 3 cut(s) 13, 60, 123
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 32
AfaI GTAC 3 cut(s) 20, 206, 244
AfiI CCNNNNNNNGG 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 31
AgeI ACCGGT 1 cut(s) 165
AjnI CCWGG 1 cut(s) 281
AleI CACNNNNGTG 1 cut(s) 140
AluBI AGCT 2 cut(s) 43, 100
AluI AGCT 2 cut(s) 43, 100
Alw21I GWGCWC 1 cut(s) 240
Aor13HI TCCGGA 1 cut(s) 67
AoxI GGCC 3 cut(s) 3, 22, 217
AsiGI ACCGGT 1 cut(s) 165
AspLEI GCGC 3 cut(s) 64, 270, 272
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 3 cut(s) 107, 127, 155
BaeGI GKGCMC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 168
BbrPI CACGTG 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 240
BccI CCATC 1 cut(s) 194
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 283
BciVI GTATCC 1 cut(s) 242
BcnI CCSGG 1 cut(s) 213
BfaI CTAG 2 cut(s) 129, 261
BfuI GTATCC 1 cut(s) 242
BglI GCCNNNNNGGC 1 cut(s) 216
BisI GCNGC 2 cut(s) 13, 60
BlsI GCNGC 2 cut(s) 14, 61
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 213, 283
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 170, 220
BmrFI CCNGG 2 cut(s) 213, 283
BpuMI CCSGG 1 cut(s) 213
BsaAI YACGTR 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 211
BsaWI WCCGGW 2 cut(s) 67, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 250
BseAI TCCGGA 1 cut(s) 67
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 250
BsePI GCGCGC 1 cut(s) 268
BseSI GKGCMC 1 cut(s) 173
Bsh1236I CGCG 2 cut(s) 62, 270
BshFI GGCC 3 cut(s) 5, 24, 219
BshNI GGYRCC 1 cut(s) 168
BshTI ACCGGT 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 3 cut(s) 68, 166, 213
BslI CCNNNNNNNGG 1 cut(s) 189
BsnI GGCC 3 cut(s) 5, 24, 219
Bsp1286I GDGCHC 2 cut(s) 173, 240
Bsp13I TCCGGA 1 cut(s) 67
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 3 cut(s) 13, 60, 123
BspANI GGCC 3 cut(s) 5, 24, 219
BspEI TCCGGA 1 cut(s) 67
BspFNI CGCG 2 cut(s) 62, 270
BspLI GGNNCC 2 cut(s) 170, 220
BspT107I GGYRCC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 211
BssHII GCGCGC 1 cut(s) 268
BssMI GATC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 2 cut(s) 139, 242
BstBAI YACGTR 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 266, 270
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 2 cut(s) 62, 270
BstHHI GCGC 3 cut(s) 64, 270, 272
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 4 cut(s) 21, 97, 216, 278
BstNI CCWGG 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 211, 281
BstSLI GKGCMC 1 cut(s) 173
BstUI CGCG 2 cut(s) 62, 270
BsuI GTATCC 1 cut(s) 242
BsuRI GGCC 3 cut(s) 5, 24, 219
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 266, 270
CfoI GCGC 3 cut(s) 64, 270, 272
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 3 cut(s) 19, 205, 243
CspAI ACCGGT 1 cut(s) 165
CspCI CAANNNNNGTGG 2 cut(s) 27, 62
CviAII CATG 2 cut(s) 7, 265
CviQI GTAC 3 cut(s) 19, 205, 243
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 3
Eco72I CACGTG 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 281
FaeI CATG 2 cut(s) 10, 268
FaiI YATR 2 cut(s) 8, 266
FatI CATG 2 cut(s) 6, 264
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 13, 60
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 2 cut(s) 13, 60
FspBI CTAG 2 cut(s) 129, 261
GlaI GCGC 3 cut(s) 63, 269, 271
GluI GCNGC 2 cut(s) 13, 60
HaeIII GGCC 3 cut(s) 5, 24, 219
HapII CCGG 3 cut(s) 68, 166, 213
HhaI GCGC 3 cut(s) 64, 270, 272
Hin1II CATG 2 cut(s) 10, 268
Hin6I GCGC 3 cut(s) 62, 268, 270
HinP1I GCGC 3 cut(s) 62, 268, 270
HinfI GANTC 2 cut(s) 132, 224
HpaII CCGG 3 cut(s) 68, 166, 213
HphI GGTGA 3 cut(s) 107, 127, 155
Hpy166II GTNNAC 2 cut(s) 205, 258
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 3 cut(s) 68, 129, 190
Hpy8I GTNNAC 2 cut(s) 205, 258
Hpy99I CGWCG 1 cut(s) 143
HpyCH4III ACNGT 2 cut(s) 139, 242
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 97, 216, 278
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 2 cut(s) 10, 268
HspAI GCGC 3 cut(s) 62, 268, 270
Kpn2I TCCGGA 1 cut(s) 67
Kzo9I GATC 1 cut(s) 54
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 7 cut(s) 29, 81, 175, 179, 226, 231, 268
MaeI CTAG 2 cut(s) 129, 261
MaeII ACGT 1 cut(s) 31
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MhlI GDGCHC 2 cut(s) 173, 240
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 71, 273
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 35, 123, 136, 171, 183
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 67
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 68, 166, 213
MspR9I CCNGG 2 cut(s) 213, 283
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 2 cut(s) 62, 270
MwoI GCNNNNNNNGC 4 cut(s) 21, 97, 216, 278
NciI CCSGG 1 cut(s) 213
NdeII GATC 1 cut(s) 54
NlaIII CATG 2 cut(s) 10, 268
NlaIV GGNNCC 2 cut(s) 170, 220
NspI RCATGY 1 cut(s) 268
OliI CACNNNNGTG 1 cut(s) 140
PaeI GCATGC 1 cut(s) 268
PauI GCGCGC 1 cut(s) 268
PfeI GAWTC 2 cut(s) 132, 224
PinAI ACCGGT 1 cut(s) 165
PkrI GCNGC 2 cut(s) 14, 61
PmaCI CACGTG 1 cut(s) 32
PmlI CACGTG 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 281
PspCI CACGTG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 2 cut(s) 170, 220
PspPI GGNCC 1 cut(s) 218
PteI GCGCGC 1 cut(s) 268
RsaI GTAC 3 cut(s) 20, 206, 244
RsaNI GTAC 3 cut(s) 19, 205, 243
RseI CAYNNNNRTG 1 cut(s) 140
SatI GCNGC 2 cut(s) 13, 60
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 1 cut(s) 218
ScaI AGTACT 1 cut(s) 244
ScrFI CCNGG 2 cut(s) 213, 283
SduI GDGCHC 2 cut(s) 173, 240
SetI ASST 5 cut(s) 34, 45, 87, 102, 287
SgrAI CRCCGGYG 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 140
SphI GCATGC 1 cut(s) 268
Sse9I AATT 2 cut(s) 71, 273
SsiI CCGC 3 cut(s) 13, 60, 123
SspI AATATT 1 cut(s) 196
SspMI CTAG 2 cut(s) 129, 261
StyD4I CCNGG 2 cut(s) 211, 281
TaaI ACNGT 2 cut(s) 139, 242
TaiI ACGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 155, 277
TasI AATT 2 cut(s) 71, 273
TatI WGTACW 2 cut(s) 204, 242
TauI GCSGC 2 cut(s) 15, 62
TfiI GAWTC 2 cut(s) 132, 224
XbaI TCTAGA 1 cut(s) 128
XceI RCATGY 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 2 cut(s) 129, 261
ZrmI AGTACT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.