Rw5G047490

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001670
Physical Location & Seq
Forward (+)
82170713 .. 82183077
12365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G047490.1

Sequence Viewer

Length: 510 bp
ATGGTCGTCGGCCCTCTGCGATTAGGGTTTGGTGTATATGAGTTCGATGTTGGTCGGCCTCTTCTCGCCTGTGTCGAAGCCTTCCTTTATCCTCCGGTGTTAGTTTCAGGTCCAGCCCGTCAGCTACGAGCGCAGGAGCTTCTTGGAAGATTCCGGTACGGATCATGTGGCTTCAAGAGTTGGGTCGATTGGGTCGCGCTGGCCGTTCGGGCAATAGCTGAAATCGTCGGCTCCACGGTCGACCTCTCCCGGCGAGGCCAAAATGTCGACTTAAACGCCCTCAAAACTGTCGCGTGCAGCAAGTACGACCTCGCACATGTGTCGAAATTGTGGGAGATGATAGCTGCGCTTCCAAAATCGGACCGCGAGGCTCTGCTCCCGAAAGAGTTTAGAGAGTTTTTAGGTGAAATTGAAAGGTTAGGAACTGAAATGTCAACTCCTTATAAGTATAAGGACTTTCTCGGGCTTGATTGCATGTTTGATAGGATTTATCTAGGTGCTTTCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

169

Amino Acids

18.95

Weight (kDa)

7.62

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELP3_N PF23613 69 - 128 1.2e-13 ELP3 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AccI GTMKAC 2 cut(s) 240, 267
AccII CGCG 3 cut(s) 197, 293, 366
AciI CCGC 1 cut(s) 364
AclWI GGATC 1 cut(s) 169
AcoI YGGCCR 1 cut(s) 201
AfaI GTAC 2 cut(s) 158, 305
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 2 cut(s) 175, 413
AluBI AGCT 4 cut(s) 124, 139, 218, 344
AluI AGCT 4 cut(s) 124, 139, 218, 344
AlwI GGATC 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 461
AoxI GGCC 4 cut(s) 10, 56, 201, 256
ApeKI GCWGC 2 cut(s) 297, 344
AspLEI GCGC 3 cut(s) 133, 199, 349
AspS9I GGNCC 3 cut(s) 11, 110, 361
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 2 cut(s) 110, 361
BbvI GCAGC 2 cut(s) 309, 331
BceAI ACGGC 1 cut(s) 188
BcgI CGANNNNNNTGC 2 cut(s) 303, 337
BcnI CCSGG 1 cut(s) 250
BfaI CTAG 1 cut(s) 494
BglI GCCNNNNNGGC 1 cut(s) 209
BisI GCNGC 2 cut(s) 298, 345
BlsI GCNGC 2 cut(s) 299, 346
Bme1390I CCNGG 1 cut(s) 250
Bme18I GGWCC 2 cut(s) 110, 361
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 3 cut(s) 11, 110, 361
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 250
BpuMI CCSGG 1 cut(s) 250
BsaJI CCNNGG 1 cut(s) 234
BsaWI WCCGGW 2 cut(s) 94, 153
BseDI CCNNGG 1 cut(s) 234
BseXI GCAGC 2 cut(s) 309, 331
BsgI GTGCAG 1 cut(s) 316
Bsh1236I CGCG 3 cut(s) 197, 293, 366
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 4 cut(s) 12, 58, 203, 258
BsiEI CGRYCG 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 3 cut(s) 95, 154, 250
BsnI GGCC 4 cut(s) 12, 58, 203, 258
BsoBI CYCGRG 1 cut(s) 461
Bsp143I GATC 1 cut(s) 161
BspACI CCGC 1 cut(s) 364
BspANI GGCC 4 cut(s) 12, 58, 203, 258
BspFNI CGCG 3 cut(s) 197, 293, 366
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 238, 289
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 201, 295
BstDEI CTNAG 1 cut(s) 507
BstDSI CCRYGG 1 cut(s) 234
BstFNI CGCG 3 cut(s) 197, 293, 366
BstHHI GCGC 3 cut(s) 133, 199, 349
BstKTI GATC 1 cut(s) 164
BstMBI GATC 1 cut(s) 161
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 2 cut(s) 130, 209
BstNSI RCATGY 2 cut(s) 320, 478
BstSCI CCNGG 1 cut(s) 248
BstUI CGCG 3 cut(s) 197, 293, 366
BstV1I GCAGC 2 cut(s) 309, 331
BsuRI GGCC 4 cut(s) 12, 58, 203, 258
BtgI CCRYGG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 201, 295
CfoI GCGC 3 cut(s) 133, 199, 349
Cfr13I GGNCC 3 cut(s) 11, 110, 361
CpoI CGGWCCG 1 cut(s) 361
Csp6I GTAC 2 cut(s) 157, 304
CspI CGGWCCG 1 cut(s) 361
CviAII CATG 3 cut(s) 165, 317, 475
CviQI GTAC 2 cut(s) 157, 304
DdeI CTNAG 1 cut(s) 507
DpnI GATC 1 cut(s) 163
DpnII GATC 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 110, 361
Eco88I CYCGRG 1 cut(s) 461
FaeI CATG 3 cut(s) 168, 320, 478
FaiI YATR 7 cut(s) 37, 39, 166, 318, 444, 450, 476
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FatI CATG 3 cut(s) 164, 316, 474
FblI GTMKAC 2 cut(s) 240, 267
Fnu4HI GCNGC 2 cut(s) 298, 345
Fsp4HI GCNGC 2 cut(s) 298, 345
FspBI CTAG 1 cut(s) 494
GlaI GCGC 3 cut(s) 132, 198, 348
GluI GCNGC 2 cut(s) 298, 345
HaeIII GGCC 4 cut(s) 12, 58, 203, 258
HapII CCGG 3 cut(s) 95, 154, 250
HhaI GCGC 3 cut(s) 133, 199, 349
Hin1II CATG 3 cut(s) 168, 320, 478
Hin6I GCGC 3 cut(s) 131, 197, 347
HinP1I GCGC 3 cut(s) 131, 197, 347
HincII GTYRAC 3 cut(s) 241, 268, 435
HindII GTYRAC 3 cut(s) 241, 268, 435
HinfI GANTC 1 cut(s) 150
HpaII CCGG 3 cut(s) 95, 154, 250
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 3 cut(s) 241, 268, 435
Hpy188I TCNGA 1 cut(s) 361
Hpy188III TCNNGA 2 cut(s) 175, 379
Hpy8I GTNNAC 3 cut(s) 241, 268, 435
Hpy99I CGWCG 2 cut(s) 11, 230
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 2 cut(s) 238, 289
HpyCH4V TGCA 2 cut(s) 297, 474
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 209
HpyF3I CTNAG 1 cut(s) 507
Hsp92II CATG 3 cut(s) 168, 320, 478
HspAI GCGC 3 cut(s) 131, 197, 347
Kzo9I GATC 1 cut(s) 161
LmnI GCTCC 3 cut(s) 136, 236, 381
LpnPI CCDG 8 cut(s) 82, 93, 108, 119, 126, 167, 185, 263
Lsp1109I GCAGC 2 cut(s) 309, 331
MaeI CTAG 1 cut(s) 494
MalI GATC 1 cut(s) 163
MboI GATC 1 cut(s) 161
MboII GAAGA 2 cut(s) 53, 159
MluCI AATT 2 cut(s) 326, 408
MnlI CCTC 8 cut(s) 24, 69, 102, 248, 254, 290, 320, 361
MseI TTAA 1 cut(s) 272
MspI CCGG 3 cut(s) 95, 154, 250
MspR9I CCNGG 1 cut(s) 250
MvnI CGCG 3 cut(s) 197, 293, 366
MwoI GCNNNNNNNGC 2 cut(s) 130, 209
NciI CCSGG 1 cut(s) 250
NdeII GATC 1 cut(s) 161
NlaIII CATG 3 cut(s) 168, 320, 478
NlaIV GGNNCC 1 cut(s) 232
NspI RCATGY 2 cut(s) 320, 478
PciI ACATGT 1 cut(s) 316
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 201
PfeI GAWTC 1 cut(s) 150
PkrI GCNGC 2 cut(s) 299, 346
PscI ACATGT 1 cut(s) 316
PsiI TTATAA 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 3 cut(s) 11, 110, 361
RsaI GTAC 2 cut(s) 158, 305
RsaNI GTAC 2 cut(s) 157, 304
Rsr2I CGGWCCG 1 cut(s) 361
RsrII CGGWCCG 1 cut(s) 361
SalI GTCGAC 2 cut(s) 239, 266
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 2 cut(s) 298, 345
Sau3AI GATC 1 cut(s) 161
Sau96I GGNCC 3 cut(s) 11, 110, 361
ScrFI CCNGG 1 cut(s) 250
SinI GGWCC 2 cut(s) 110, 361
Sse9I AATT 2 cut(s) 326, 408
SsiI CCGC 1 cut(s) 364
SspMI CTAG 1 cut(s) 494
StyD4I CCNGG 1 cut(s) 248
TaaI ACNGT 2 cut(s) 238, 289
TaqI TCGA 6 cut(s) 45, 75, 186, 240, 267, 323
TasI AATT 2 cut(s) 326, 408
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TseI GCWGC 2 cut(s) 297, 344
TspGWI ACGGA 1 cut(s) 174
VpaK11BI GGWCC 2 cut(s) 110, 361
XceI RCATGY 2 cut(s) 320, 478
XmiI GTMKAC 2 cut(s) 240, 267
XspI CTAG 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.