MD06G1154300.v1.1

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001670
Physical Location & Seq
Forward (+)
29752127 .. 29752888
762 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1154300.v1.1.491

Sequence Viewer

Length: 255 bp
ATGATTGCAGCTCTGCCGGAGTCGGACCGTAAGGCTCTTCTCCCCAAGCTCCGGGTCAAGTCGGTCCCAACCGCTTCGGGCATCGCCGTCGTGGCCGGGATGTCGAAGCTTCATCGGTGGCCCCACATCGCCACTACCGGAAATATTTGCGTGTACTGCCCCGGCGGTCCCGATTCGGACTTCGAGCGCAGCACTCAGTCTTACACTGGATACGAGCCTACTAGCAATTCGGGCAAGATTTCCATGATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

85

Amino Acids

8.99

Weight (kDa)

8.69

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 72, 165
AcoI YGGCCR 1 cut(s) 93
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 51
AluBI AGCT 3 cut(s) 11, 49, 109
AluI AGCT 3 cut(s) 11, 49, 109
AoxI GGCC 2 cut(s) 93, 119
ApeKI GCWGC 2 cut(s) 8, 189
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 4 cut(s) 25, 64, 120, 167
AsuC2I CCSGG 3 cut(s) 53, 97, 162
AvaII GGWCC 3 cut(s) 25, 64, 167
BbvI GCAGC 2 cut(s) 20, 201
BceAI ACGGC 1 cut(s) 71
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BciVI GTATCC 1 cut(s) 203
BcnI CCSGG 3 cut(s) 53, 97, 162
BfaI CTAG 1 cut(s) 222
BfuI GTATCC 1 cut(s) 203
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 2 cut(s) 9, 190
BlsI GCNGC 2 cut(s) 10, 191
Bme1390I CCNGG 3 cut(s) 53, 97, 162
Bme18I GGWCC 3 cut(s) 25, 64, 167
BmgT120I GGNCC 4 cut(s) 25, 64, 120, 167
BmiI GGNNCC 3 cut(s) 66, 122, 169
BmrFI CCNGG 3 cut(s) 53, 97, 162
BmsI GCATC 1 cut(s) 90
BpuMI CCSGG 3 cut(s) 53, 97, 162
BsaJI CCNNGG 1 cut(s) 160
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 20, 201
BshFI GGCC 2 cut(s) 95, 121
BsiSI CCGG 5 cut(s) 17, 52, 96, 138, 162
BslFI GGGAC 2 cut(s) 50, 153
BslI CCNNNNNNNGG 1 cut(s) 51
BsmFI GGGAC 2 cut(s) 50, 153
BsnI GGCC 2 cut(s) 95, 121
BspACI CCGC 2 cut(s) 72, 165
BspANI GGCC 2 cut(s) 95, 121
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 3 cut(s) 66, 122, 169
BspQI GCTCTTC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 189
BstMWI GCNNNNNNNGC 3 cut(s) 92, 156, 231
BstSCI CCNGG 3 cut(s) 51, 95, 160
BstV1I GCAGC 2 cut(s) 20, 201
BsuI GTATCC 1 cut(s) 203
BsuRI GGCC 2 cut(s) 95, 121
BtgZI GCGATG 2 cut(s) 67, 112
BtsCI GGATG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 204
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 4 cut(s) 25, 64, 120, 167
CpoI CGGWCCG 1 cut(s) 25
Csp6I GTAC 1 cut(s) 154
CspI CGGWCCG 1 cut(s) 25
CviAII CATG 1 cut(s) 244
CviJI RGCY 7 cut(s) 11, 35, 49, 95, 109, 121, 217
CviKI_1 RGCY 7 cut(s) 11, 35, 49, 95, 109, 121, 217
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco47I GGWCC 3 cut(s) 25, 64, 167
FaeI CATG 1 cut(s) 247
FaiI YATR 1 cut(s) 245
FaqI GGGAC 2 cut(s) 50, 153
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 9, 190
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 2 cut(s) 9, 190
FspBI CTAG 1 cut(s) 222
GlaI GCGC 1 cut(s) 188
GluI GCNGC 2 cut(s) 9, 190
HaeIII GGCC 2 cut(s) 95, 121
HapII CCGG 5 cut(s) 17, 52, 96, 138, 162
HhaI GCGC 1 cut(s) 189
Hin1II CATG 1 cut(s) 247
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 2 cut(s) 20, 173
HpaII CCGG 5 cut(s) 17, 52, 96, 138, 162
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 25, 178
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 156, 231
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 1 cut(s) 247
HspAI GCGC 1 cut(s) 187
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 6 cut(s) 30, 65, 109, 151, 175, 192
Lsp1109I GCAGC 2 cut(s) 20, 201
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 222
MboII GAAGA 1 cut(s) 29
MluCI AATT 1 cut(s) 226
MlyI GAGTC 1 cut(s) 29
MspI CCGG 5 cut(s) 17, 52, 96, 138, 162
MspR9I CCNGG 3 cut(s) 53, 97, 162
MwoI GCNNNNNNNGC 3 cut(s) 92, 156, 231
NciI CCSGG 3 cut(s) 53, 97, 162
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 3 cut(s) 66, 122, 169
PciSI GCTCTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 2 cut(s) 10, 191
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PspN4I GGNNCC 3 cut(s) 66, 122, 169
PspPI GGNCC 4 cut(s) 25, 64, 120, 167
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
Rsr2I CGGWCCG 1 cut(s) 25
RsrII CGGWCCG 1 cut(s) 25
SapI GCTCTTC 1 cut(s) 42
SatI GCNGC 2 cut(s) 9, 190
Sau96I GGNCC 4 cut(s) 25, 64, 120, 167
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 3 cut(s) 53, 97, 162
SetI ASST 3 cut(s) 13, 51, 111
SfaNI GCATC 1 cut(s) 90
SinI GGWCC 3 cut(s) 25, 64, 167
Sse9I AATT 1 cut(s) 226
SsiI CCGC 2 cut(s) 72, 165
SspI AATATT 1 cut(s) 145
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 3 cut(s) 51, 95, 160
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 2 cut(s) 104, 183
TaqII GACCGA 1 cut(s) 52
TasI AATT 1 cut(s) 226
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 1 cut(s) 173
TscAI CASTG 1 cut(s) 211
TseI GCWGC 2 cut(s) 8, 189
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 1 cut(s) 211
VpaK11BI GGWCC 3 cut(s) 25, 64, 167
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.