Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001670

Physical Location & Seq

Genomic Coordinates Forward (+)

29755804 .. 29756028

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1154500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGCTTTCTTATGGTTGTACAAGACTAGAAATTGGAGTTCAGATTACAAACGAGGGTGTGGCTCGGGACACCAATAGAGGTCATACCATAGCTGCAGTGGCTGATTGTTTTTGCTTGGCAAAGGATGCTGGTTTTAAGGTCAGCCTAGTACCTTATCATAAAACTCACTTACCTTCACCGTGGGAAAAGAACGGGTTTTGGACCTTTTATCAAAACAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

75

Amino Acids

8.3

Weight (kDa)

7.75

Isoelectric Point (pI)

25.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Radical_SAM	PF04055	2 - 49	5.3e-06	Radical SAM superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50320
fragaria_vesca	FvH4_3g25041 FvH4_5g07340 FvH4_5g07410 FvH4_5g07450
malus_domestica	MD00G1134500.v1.1 MD00G1179600.v1.1 MD00G1179900.v1.1 MD06G1151700.v1.1 MD06G1152100.v1.1 MD06G1152200.v1.1 MD06G1152600.v1.1 MD06G1153400.v1.1 MD06G1154200.v1.1 MD06G1154300.v1.1 MD06G1154500.v1.1 MD06G1155000.v1.1 MD06G1155100.v1.1 MD06G1155200.v1.1 MD06G1155400.v1.1 MD06G1155500.v1.1 MD06G1155900.v1.1 MD06G1156600.v1.1 MD06G1156700.v1.1 MD06G1156800.v1.1 MD14G1163700.v1.1
prunus_persica	Prupe.5G157100_v2.0.a1
pyrus_communis	pycom06g13990 pycom14g13640
rosa_chinensis	RchiOBHm_Chr5g0026811 RchiOBHm_Chr7g0191201
rosa_laevigata	RLG00000004470 RLG00000036734
rosa_multiflora	Rmu_co8147760.1_g000001 Rmu_co8234453.1_g000001 Rmu_sc0016007.1_g000009 Rmu_sc0019130.1_g000001 Rmu_ssc0000172.1_g000023
rosa_roxburghii	Rroxscaffold_3G00263980
rosa_rugosa	Rorug06G0509500 Rorug07G0260900
rosa_samantha	Rh1BG014900 Rh4CG251200 Rh5DG187900 Rh7AG116700 Rh7BG119000 Rh7CG121600 Rh7DG120000
rosa_wichuraiana	Rw5G047490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	19, 150
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
AlwNI	CAGNNNCTG	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	168
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	79
BfaI	CTAG	2 cut(s)	26, 146
BfmI	CTRYAG	1 cut(s)	93
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	201
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	201
BmsI	GCATC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	179
BseGI	GGATG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	17
BspMAI	CTGCAG	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	180
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	17
BstDSI	CCRYGG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 125
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	79
BtgI	CCRYGG	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	18, 149
CviJI	RGCY	4 cut(s)	62, 92, 101, 144
CviKI_1	RGCY	4 cut(s)	62, 92, 101, 144
CviQI	GTAC	2 cut(s)	18, 149
Eco47I	GGWCC	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	63
FaiI	YATR	4 cut(s)	12, 84, 89, 159
FaqI	GGGAC	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	2 cut(s)	26, 146
GluI	GCNGC	1 cut(s)	93
HphI	GGTGA	1 cut(s)	168
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	183
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 125
LpnPI	CCDG	1 cut(s)	114
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	26, 146
MluCI	AATT	2 cut(s)	30, 217
MnlI	CCTC	2 cut(s)	46, 71
MseI	TTAA	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	98, 125
PkrI	GCNGC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	101
RsaI	GTAC	2 cut(s)	19, 150
RsaNI	GTAC	2 cut(s)	18, 149
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	1 cut(s)	93
Sau96I	GGNCC	1 cut(s)	201
SetI	ASST	6 cut(s)	82, 94, 141, 154, 175, 206
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	1 cut(s)	201
Sse9I	AATT	2 cut(s)	30, 217
SspMI	CTAG	2 cut(s)	26, 146
TaaI	ACNGT	1 cut(s)	180
TasI	AATT	2 cut(s)	30, 217
TatI	WGTACW	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	1 cut(s)	92
TspRI	CASTG	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XspI	CTAG	2 cut(s)	26, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.