MD06G1152600.v1.1

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001670
Physical Location & Seq
Forward (+)
29601350 .. 29602364
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1152600.v1.1.491

Sequence Viewer

Length: 189 bp
ATGGTCGACCTCTCCCGGAAGGGCCAAAACATTGACCTAAACGCCCTCAAGACCACCGCGTGCCGCAAGTACGGCCTCTCACGTGCGCCGAAGCTGGTCGAAATGATTGCGGCTCTGCCGGAGTCGGACCGTGAGGCTCTTCTCCCAACTAGCATGTGCGCAATTCGGGCAAGGTCGAGTTCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

63

Amino Acids

6.74

Weight (kDa)

9.59

Isoelectric Point (pI)

52.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELP3_N PF23613 2 - 49 1.6e-15 ELP3 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 160
AccI GTMKAC 1 cut(s) 6
AccII CGCG 1 cut(s) 59
AciI CCGC 3 cut(s) 57, 64, 110
AcvI CACGTG 1 cut(s) 83
AdeI CACNNNGTG 1 cut(s) 60
AfaI GTAC 1 cut(s) 71
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
AoxI GGCC 2 cut(s) 22, 73
AspLEI GCGC 2 cut(s) 88, 161
AspS9I GGNCC 2 cut(s) 22, 127
AsuC2I CCSGG 1 cut(s) 16
AvaII GGWCC 1 cut(s) 127
BbrPI CACGTG 1 cut(s) 83
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BcnI CCSGG 1 cut(s) 16
BfaI CTAG 1 cut(s) 150
BisI GCNGC 2 cut(s) 64, 111
BlsI GCNGC 2 cut(s) 65, 112
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 22, 127
BmrFI CCNGG 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 16
BsaAI YACGTR 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 2 cut(s) 24, 75
BsiSI CCGG 2 cut(s) 16, 119
BsnI GGCC 2 cut(s) 24, 75
BspACI CCGC 3 cut(s) 57, 64, 110
BspANI GGCC 2 cut(s) 24, 75
BspFNI CGCG 1 cut(s) 59
BspQI GCTCTTC 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 144
BstBAI YACGTR 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 61
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 2 cut(s) 88, 161
BstMWI GCNNNNNNNGC 2 cut(s) 72, 167
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 14
BstUI CGCG 1 cut(s) 59
BsuRI GGCC 2 cut(s) 24, 75
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 2 cut(s) 88, 161
Cfr13I GGNCC 2 cut(s) 22, 127
CpoI CGGWCCG 1 cut(s) 127
Csp6I GTAC 1 cut(s) 70
CspI CGGWCCG 1 cut(s) 127
CviAII CATG 1 cut(s) 154
CviJI RGCY 5 cut(s) 24, 75, 94, 113, 137
CviKI_1 RGCY 5 cut(s) 24, 75, 94, 113, 137
CviQI GTAC 1 cut(s) 70
DraIII CACNNNGTG 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 127
Eco72I CACGTG 1 cut(s) 83
FaeI CATG 1 cut(s) 157
FaiI YATR 1 cut(s) 155
FatI CATG 1 cut(s) 153
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 64, 111
Fsp4HI GCNGC 2 cut(s) 64, 111
FspBI CTAG 1 cut(s) 150
FspI TGCGCA 1 cut(s) 160
GlaI GCGC 2 cut(s) 87, 160
GluI GCNGC 2 cut(s) 64, 111
HaeIII GGCC 2 cut(s) 24, 75
HapII CCGG 2 cut(s) 16, 119
HhaI GCGC 2 cut(s) 88, 161
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 2 cut(s) 86, 159
HinP1I GCGC 2 cut(s) 86, 159
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 1 cut(s) 122
HpaII CCGG 2 cut(s) 16, 119
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 167
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 2 cut(s) 86, 159
LguI GCTCTTC 1 cut(s) 144
LpnPI CCDG 3 cut(s) 29, 80, 132
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 82
MboII GAAGA 1 cut(s) 131
MluCI AATT 1 cut(s) 162
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 4 cut(s) 20, 56, 86, 127
MseI TTAA 1 cut(s) 187
MspI CCGG 2 cut(s) 16, 119
MspR9I CCNGG 1 cut(s) 16
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 72, 167
NciI CCSGG 1 cut(s) 16
NlaIII CATG 1 cut(s) 157
NsbI TGCGCA 1 cut(s) 160
NspI RCATGY 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 14
PkrI GCNGC 2 cut(s) 65, 112
PleI GAGTC 1 cut(s) 130
PmaCI CACGTG 1 cut(s) 83
PmlI CACGTG 1 cut(s) 83
PpsI GAGTC 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 83
PspCI CACGTG 1 cut(s) 83
PspPI GGNCC 2 cut(s) 22, 127
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
Rsr2I CGGWCCG 1 cut(s) 127
RsrII CGGWCCG 1 cut(s) 127
SalI GTCGAC 1 cut(s) 5
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 187
SatI GCNGC 2 cut(s) 64, 111
Sau96I GGNCC 2 cut(s) 22, 127
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 16
SetI ASST 5 cut(s) 12, 39, 85, 96, 176
SinI GGWCC 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 1 cut(s) 162
SsiI CCGC 3 cut(s) 57, 64, 110
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 85
TaqI TCGA 3 cut(s) 6, 99, 176
TasI AATT 1 cut(s) 162
TauI GCSGC 2 cut(s) 66, 113
Tru1I TTAA 1 cut(s) 187
Tru9I TTAA 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 127
XceI RCATGY 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.