MD06G1151700.v1.1

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001670
Physical Location & Seq
Forward (+)
29548749 .. 29550101
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1151700.v1.1.491

Sequence Viewer

Length: 291 bp
ATGCATAGTCGTTGCCCACAGATTACCGTGATTACAATATTAGAAATCTGCACGTTGCCCGCGGATTACCATGATTACTTTATTAGGCACGATGCCTTATTTGGCCACTGTGGAAGAGGCAGTTGCCTACTCTGCACGGTGCTACTAAATGTTGTTGCTCTGGTGTTCGTGAGAGCTCCATGTTTATGGGACTGCTGTTCCAGTGCATGGGTGAATTCTGACAAGCTGCAACACCAGGATTATGGTACCCTGGAGGAGGCCGAGCGGATTGCTAGCGGGGAGCATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

97

Amino Acids

10.83

Weight (kDa)

5.77

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AccB7I CCANNNNNTGG 1 cut(s) 207
AccBSI CCGCTC 1 cut(s) 265
AccII CGCG 1 cut(s) 62
AciI CCGC 4 cut(s) 60, 62, 265, 276
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 1 cut(s) 214
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 2 cut(s) 207, 256
AjnI CCWGG 2 cut(s) 234, 249
AluBI AGCT 2 cut(s) 176, 226
AluI AGCT 2 cut(s) 176, 226
Alw21I GWGCWC 1 cut(s) 178
AoxI GGCC 2 cut(s) 103, 258
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 1 cut(s) 214
Asp718I GGTACC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 223
AsuNHI GCTAGC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 105
BanI GGYRCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 213
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 2 cut(s) 236, 251
BfaI CTAG 1 cut(s) 273
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 2 cut(s) 236, 251
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 2 cut(s) 236, 251
BmsI GCATC 1 cut(s) 82
BmtI GCTAGC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 272
Bsa29I ATCGAT 1 cut(s) 286
BsaJI CCNNGG 2 cut(s) 60, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 256
Bse1I ACTGG 1 cut(s) 201
BseBI CCWGG 2 cut(s) 236, 251
BseCI ATCGAT 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 60, 249
BseLI CCNNNNNNNGG 2 cut(s) 207, 256
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 213
BsgI GTGCAG 2 cut(s) 34, 118
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 2 cut(s) 105, 260
BshNI GGYRCC 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 178
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 207, 256
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 2 cut(s) 105, 260
Bsp1286I GDGCHC 1 cut(s) 178
BspACI CCGC 4 cut(s) 60, 62, 265, 276
BspANI GGCC 2 cut(s) 105, 260
BspDI ATCGAT 1 cut(s) 286
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 247
BspOI GCTAGC 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 265
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 60, 249
Bst2UI CCWGG 2 cut(s) 236, 251
Bst4CI ACNGT 3 cut(s) 28, 110, 139
Bst6I CTCTTC 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 60, 274
BstDSI CCRYGG 1 cut(s) 60
BstENI CCTNNNNNAGG 1 cut(s) 254
BstFNI CGCG 1 cut(s) 62
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 2 cut(s) 236, 251
BstSCI CCNGG 2 cut(s) 234, 249
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 213
BstXI CCANNNNNNTGG 2 cut(s) 186, 242
Bsu15I ATCGAT 1 cut(s) 286
BsuRI GGCC 2 cut(s) 105, 260
BsuTUI ATCGAT 1 cut(s) 286
BtgI CCRYGG 1 cut(s) 60
BtsIMutI CAGTG 2 cut(s) 106, 208
Cac8I GCNNGC 2 cut(s) 60, 274
Cfr42I CCGCGG 1 cut(s) 63
ClaI ATCGAT 1 cut(s) 286
Csp6I GTAC 1 cut(s) 246
CviAII CATG 3 cut(s) 71, 180, 207
CviJI RGCY 4 cut(s) 105, 176, 226, 260
CviKI_1 RGCY 4 cut(s) 105, 176, 226, 260
CviQI GTAC 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 176
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 234, 249
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 178
FaeI CATG 3 cut(s) 74, 183, 210
FaiI YATR 6 cut(s) 6, 72, 181, 187, 208, 243
FaqI GGGAC 1 cut(s) 203
FatI CATG 3 cut(s) 70, 179, 206
FauI CCCGC 2 cut(s) 67, 269
Fnu4HI GCNGC 1 cut(s) 227
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 1 cut(s) 273
GluI GCNGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 2 cut(s) 105, 260
Hin1II CATG 3 cut(s) 74, 183, 210
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 169
HpyCH4III ACNGT 3 cut(s) 28, 110, 139
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 5 cut(s) 4, 51, 135, 206, 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 3 cut(s) 74, 183, 210
KpnI GGTACC 1 cut(s) 249
KspI CCGCGG 1 cut(s) 63
LmnI GCTCC 2 cut(s) 181, 280
LpnPI CCDG 6 cut(s) 146, 214, 221, 236, 248, 263
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 1 cut(s) 82
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 53
MbiI CCGCTC 1 cut(s) 265
MboII GAAGA 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 178
MlsI TGGCCA 1 cut(s) 105
MluCI AATT 1 cut(s) 214
MluNI TGGCCA 1 cut(s) 105
MnlI CCTC 3 cut(s) 110, 247, 250
Mox20I TGGCCA 1 cut(s) 105
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 184
Msp20I TGGCCA 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 236, 251
MvaI CCWGG 2 cut(s) 236, 251
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 132
NheI GCTAGC 1 cut(s) 272
NlaIII CATG 3 cut(s) 74, 183, 210
NlaIV GGNNCC 1 cut(s) 247
NmeAIII GCCGAG 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 6
PflMI CCANNNNNTGG 1 cut(s) 207
PkrI GCNGC 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 178
Psp6I CCWGG 2 cut(s) 234, 249
PspGI CCWGG 2 cut(s) 234, 249
PspN4I GGNNCC 1 cut(s) 247
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 184
SacI GAGCTC 1 cut(s) 178
SacII CCGCGG 1 cut(s) 63
SatI GCNGC 1 cut(s) 227
ScrFI CCNGG 2 cut(s) 236, 251
SduI GDGCHC 1 cut(s) 178
SetI ASST 3 cut(s) 56, 178, 228
SfaNI GCATC 1 cut(s) 82
Sfr303I CCGCGG 1 cut(s) 63
SgrBI CCGCGG 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 184
Sse9I AATT 1 cut(s) 214
SsiI CCGC 4 cut(s) 60, 62, 265, 276
SspI AATATT 1 cut(s) 39
SspMI CTAG 1 cut(s) 273
SstI GAGCTC 1 cut(s) 178
StyD4I CCNGG 2 cut(s) 234, 249
TaaI ACNGT 3 cut(s) 28, 110, 139
TaiI ACGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 286
TasI AATT 1 cut(s) 214
TscAI CASTG 2 cut(s) 113, 208
TseI GCWGC 1 cut(s) 226
TspRI CASTG 2 cut(s) 113, 208
Van91I CCANNNNNTGG 1 cut(s) 207
XagI CCTNNNNNAGG 1 cut(s) 254
XapI RAATTY 1 cut(s) 214
XspI CTAG 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.