FvH4_5g07410

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001670
Physical Location & Seq
Reverse (-)
4330150 .. 4330467
318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07410.t1

Sequence Viewer

Length: 318 bp
ATGGTCGACCTCTCCCGGCGAGGCGAAACCGTCGACCTAAACGCCCTCAAAACCGCCGCGTGCCGCAAGTACGGCCTCGCACGTGCGCCGAAGCTGGTCGAGATGATCGCCGCCCTTCCAGAGTCGGACCGCGAGGCTCTGCTTCCGAAGCTGAAAGCCAAGCCGGTCCGAACCGCCTCCGGAATCGCCGTCGTGGCCATGATGTCGAAGCCTCACCGGTGCCCTCACATCGCCACAACCGGGAATATTTGCGTGTACTGCCCCGGTGGGCCCGACTCGGATTTTGAGTACAGTACTCAGTCTTATACCGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

106

Amino Acids

11.33

Weight (kDa)

9.0

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELP3_N PF23613 2 - 59 8.2e-23 ELP3 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 219
AccI GTMKAC 2 cut(s) 6, 33
AccII CGCG 2 cut(s) 59, 132
AccIII TCCGGA 1 cut(s) 179
AciI CCGC 6 cut(s) 54, 57, 64, 111, 130, 174
AcoI YGGCCR 1 cut(s) 195
AcvI CACGTG 1 cut(s) 83
AfaI GTAC 4 cut(s) 71, 257, 290, 295
AfiI CCNNNNNNNGG 1 cut(s) 240
AgeI ACCGGT 1 cut(s) 216
AluBI AGCT 2 cut(s) 94, 151
AluI AGCT 2 cut(s) 94, 151
Aor13HI TCCGGA 1 cut(s) 179
AoxI GGCC 3 cut(s) 73, 195, 269
ApaI GGGCCC 1 cut(s) 273
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AsiGI ACCGGT 1 cut(s) 216
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 4 cut(s) 127, 166, 269, 270
AsuC2I CCSGG 3 cut(s) 16, 241, 264
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 2 cut(s) 127, 166
BaeGI GKGCMC 2 cut(s) 224, 273
BalI TGGCCA 1 cut(s) 197
BanI GGYRCC 1 cut(s) 219
BanII GRGCYC 1 cut(s) 273
BbrPI CACGTG 1 cut(s) 83
BceAI ACGGC 2 cut(s) 88, 173
BcnI CCSGG 3 cut(s) 16, 241, 264
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 3 cut(s) 57, 64, 111
BlsI GCNGC 3 cut(s) 58, 65, 112
BmcAI AGTACT 1 cut(s) 295
Bme1390I CCNGG 3 cut(s) 16, 241, 264
Bme18I GGWCC 2 cut(s) 127, 166
BmgT120I GGNCC 4 cut(s) 127, 166, 269, 270
BmiI GGNNCC 2 cut(s) 221, 271
BmrFI CCNGG 3 cut(s) 16, 241, 264
BpuMI CCSGG 3 cut(s) 16, 241, 264
BsaAI YACGTR 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 262
BsaWI WCCGGW 3 cut(s) 179, 216, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse118I RCCGGY 2 cut(s) 163, 216
BseAI TCCGGA 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 311
BseSI GKGCMC 2 cut(s) 224, 273
Bsh1236I CGCG 2 cut(s) 59, 132
BshFI GGCC 3 cut(s) 75, 197, 271
BshNI GGYRCC 1 cut(s) 219
BshTI ACCGGT 1 cut(s) 216
BsiSI CCGG 7 cut(s) 16, 164, 180, 217, 240, 264, 309
BslI CCNNNNNNNGG 1 cut(s) 240
BsnI GGCC 3 cut(s) 75, 197, 271
Bsp120I GGGCCC 1 cut(s) 269
Bsp1286I GDGCHC 2 cut(s) 224, 273
Bsp13I TCCGGA 1 cut(s) 179
Bsp143I GATC 1 cut(s) 105
BspACI CCGC 6 cut(s) 54, 57, 64, 111, 130, 174
BspANI GGCC 3 cut(s) 75, 197, 271
BspCNI CTCAG 1 cut(s) 310
BspEI TCCGGA 1 cut(s) 179
BspFNI CGCG 2 cut(s) 59, 132
BspLI GGNNCC 2 cut(s) 221, 271
BspT107I GGYRCC 1 cut(s) 219
BsrFI RCCGGY 2 cut(s) 163, 216
BssAI RCCGGY 2 cut(s) 163, 216
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 31, 293
BstBAI YACGTR 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 297
BstFNI CGCG 2 cut(s) 59, 132
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 4 cut(s) 72, 148, 194, 258
BstSCI CCNGG 3 cut(s) 14, 239, 262
BstSLI GKGCMC 2 cut(s) 224, 273
BstUI CGCG 2 cut(s) 59, 132
BsuRI GGCC 3 cut(s) 75, 197, 271
BtgZI GCGATG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 2 cut(s) 163, 216
Cfr13I GGNCC 4 cut(s) 127, 166, 269, 270
CpoI CGGWCCG 2 cut(s) 127, 166
Csp6I GTAC 4 cut(s) 70, 256, 289, 294
CspAI ACCGGT 1 cut(s) 216
CspI CGGWCCG 2 cut(s) 127, 166
CviAII CATG 1 cut(s) 199
CviJI RGCY 9 cut(s) 75, 94, 137, 151, 158, 163, 197, 211, 271
CviKI_1 RGCY 9 cut(s) 75, 94, 137, 151, 158, 163, 197, 211, 271
CviQI GTAC 4 cut(s) 70, 256, 289, 294
DdeI CTNAG 1 cut(s) 297
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 2 cut(s) 127, 166
Eco72I CACGTG 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 273
FaeI CATG 1 cut(s) 202
FaiI YATR 2 cut(s) 200, 306
FatI CATG 1 cut(s) 198
FblI GTMKAC 2 cut(s) 6, 33
Fnu4HI GCNGC 3 cut(s) 57, 64, 111
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 3 cut(s) 57, 64, 111
GlaI GCGC 1 cut(s) 87
GluI GCNGC 3 cut(s) 57, 64, 111
HaeIII GGCC 3 cut(s) 75, 197, 271
HapII CCGG 7 cut(s) 16, 164, 180, 217, 240, 264, 309
HhaI GCGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 202
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 2 cut(s) 7, 34
HindII GTYRAC 2 cut(s) 7, 34
HinfI GANTC 3 cut(s) 122, 183, 275
HpaII CCGG 7 cut(s) 16, 164, 180, 217, 240, 264, 309
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 3 cut(s) 7, 34, 256
Hpy188I TCNGA 4 cut(s) 127, 147, 170, 280
Hpy188III TCNNGA 3 cut(s) 100, 119, 180
Hpy8I GTNNAC 3 cut(s) 7, 34, 256
Hpy99I CGWCG 2 cut(s) 35, 194
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 31, 293
HpyCH4IV ACGT 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 148, 194, 258
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 1 cut(s) 202
HspAI GCGC 1 cut(s) 86
Kpn2I TCCGGA 1 cut(s) 179
Kzo9I GATC 1 cut(s) 105
LpnPI CCDG 8 cut(s) 29, 80, 132, 177, 193, 230, 253, 277
MaeII ACGT 1 cut(s) 82
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MhlI GDGCHC 2 cut(s) 224, 273
MlsI TGGCCA 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 2 cut(s) 131, 269
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 8 cut(s) 14, 20, 56, 86, 127, 187, 222, 234
Mox20I TGGCCA 1 cut(s) 197
MroI TCCGGA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 197
MspI CCGG 7 cut(s) 16, 164, 180, 217, 240, 264, 309
MspR9I CCNGG 3 cut(s) 16, 241, 264
MvnI CGCG 2 cut(s) 59, 132
MwoI GCNNNNNNNGC 4 cut(s) 72, 148, 194, 258
NciI CCSGG 3 cut(s) 16, 241, 264
NdeII GATC 1 cut(s) 105
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 2 cut(s) 221, 271
PfeI GAWTC 1 cut(s) 183
PinAI ACCGGT 1 cut(s) 216
PkrI GCNGC 3 cut(s) 58, 65, 112
PleI GAGTC 2 cut(s) 130, 269
PmaCI CACGTG 1 cut(s) 83
PmlI CACGTG 1 cut(s) 83
PpsI GAGTC 2 cut(s) 130, 269
Ppu21I YACGTR 1 cut(s) 83
PspCI CACGTG 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 221, 271
PspOMI GGGCCC 1 cut(s) 269
PspPI GGNCC 4 cut(s) 127, 166, 269, 270
RsaI GTAC 4 cut(s) 71, 257, 290, 295
RsaNI GTAC 4 cut(s) 70, 256, 289, 294
Rsr2I CGGWCCG 2 cut(s) 127, 166
RsrII CGGWCCG 2 cut(s) 127, 166
SalI GTCGAC 2 cut(s) 5, 32
SatI GCNGC 3 cut(s) 57, 64, 111
Sau3AI GATC 1 cut(s) 105
Sau96I GGNCC 4 cut(s) 127, 166, 269, 270
ScaI AGTACT 1 cut(s) 295
SchI GAGTC 2 cut(s) 131, 269
ScrFI CCNGG 3 cut(s) 16, 241, 264
SduI GDGCHC 2 cut(s) 224, 273
SetI ASST 5 cut(s) 12, 39, 85, 96, 153
SgrAI CRCCGGYG 1 cut(s) 216
SinI GGWCC 2 cut(s) 127, 166
SsiI CCGC 6 cut(s) 54, 57, 64, 111, 130, 174
SspI AATATT 1 cut(s) 247
StyD4I CCNGG 3 cut(s) 14, 239, 262
TaaI ACNGT 2 cut(s) 31, 293
TaiI ACGT 1 cut(s) 85
TaqI TCGA 4 cut(s) 6, 33, 99, 206
TatI WGTACW 3 cut(s) 255, 288, 293
TauI GCSGC 3 cut(s) 59, 66, 113
TfiI GAWTC 1 cut(s) 183
VpaK11BI GGWCC 2 cut(s) 127, 166
XmiI GTMKAC 2 cut(s) 6, 33
ZrmI AGTACT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.