Rmu_co8147760.1_g000001

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8147760.1
OG0001670
Physical Location & Seq
Forward (+)
1 .. 642
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8147760.1_g000001.1.cds

Sequence Viewer

Length: 359 bp
gggttgagagagacatggaaagttttcgggagttttttgagagccccctgttcagagcagatggacttaaaatttatccaacacttgtaatccgtgggactggactttatgagctctggaaaactggaaggtatagaaattacccacccgagcaacttgtggacattgtagccaggatcctggccatggtacccccttggacacgtgtttatagagttcagcgggacattccaatgcctctagttacttctggggtggagaaaggaaatcttcgggagctagctttagctcggatggaagacttgggcttaaagtgtcgtgatgttcgaacacgagaagctggaattcaggtatcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

118

Amino Acids

13.73

Weight (kDa)

9.25

Isoelectric Point (pI)

20.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 189
AccB1I GGYRCC 1 cut(s) 189
AciI CCGC 1 cut(s) 222
AclWI GGATC 2 cut(s) 171, 184
AcoI YGGCCR 1 cut(s) 182
AcsI RAATTY 2 cut(s) 71, 344
AcvI CACGTG 1 cut(s) 205
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 186
AflIII ACRYGT 2 cut(s) 202, 204
AjnI CCWGG 2 cut(s) 172, 179
AluBI AGCT 5 cut(s) 114, 279, 283, 289, 340
AluI AGCT 5 cut(s) 114, 279, 283, 289, 340
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 2 cut(s) 171, 184
Ama87I CYCGRG 1 cut(s) 148
AoxI GGCC 1 cut(s) 182
ApoI RAATTY 2 cut(s) 71, 344
Asp700I GAANNNNTTC 1 cut(s) 23
Asp718I GGTACC 1 cut(s) 189
AsuII TTCGAA 1 cut(s) 327
AsuNHI GCTAGC 1 cut(s) 279
AvaI CYCGRG 1 cut(s) 148
BalI TGGCCA 1 cut(s) 184
BamHI GGATCC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 189
BanII GRGCYC 2 cut(s) 46, 116
BauI CACGAG 1 cut(s) 332
BbrPI CACGTG 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 116
BccI CCATC 2 cut(s) 55, 288
BciT130I CCWGG 2 cut(s) 174, 181
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 2 cut(s) 241, 280
Bme1390I CCNGG 2 cut(s) 174, 181
BmeT110I CYCGRG 1 cut(s) 148
BmiI GGNNCC 2 cut(s) 178, 191
BmrFI CCNGG 2 cut(s) 174, 181
BmtI GCTAGC 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 305
Bpu14I TTCGAA 1 cut(s) 327
BsaAI YACGTR 1 cut(s) 205
BsaJI CCNNGG 3 cut(s) 93, 185, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse1I ACTGG 2 cut(s) 105, 129
BseBI CCWGG 2 cut(s) 174, 181
BseDI CCNNGG 3 cut(s) 93, 185, 196
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 186
BseNI ACTGG 2 cut(s) 105, 129
BshFI GGCC 1 cut(s) 184
BshNI GGYRCC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 148
BslFI GGGAC 2 cut(s) 111, 238
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 2 cut(s) 111, 238
BsnI GGCC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 327
Bsp1286I GDGCHC 2 cut(s) 46, 116
Bsp143I GATC 1 cut(s) 176
Bsp19I CCATGG 1 cut(s) 185
BspACI CCGC 1 cut(s) 222
BspANI GGCC 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 178, 191
BspOI GCTAGC 1 cut(s) 283
BspPI GGATC 2 cut(s) 171, 184
BspT104I TTCGAA 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 189
BsrI ACTGG 2 cut(s) 105, 129
BssECI CCNNGG 3 cut(s) 93, 185, 196
BssMI GATC 1 cut(s) 176
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 2 cut(s) 185, 196
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 2 cut(s) 174, 181
BstBAI YACGTR 1 cut(s) 205
BstBI TTCGAA 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 281
BstDSI CCRYGG 2 cut(s) 93, 185
BstF5I GGATG 1 cut(s) 299
BstKTI GATC 1 cut(s) 179
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 1 cut(s) 176
BstNI CCWGG 2 cut(s) 174, 181
BstSCI CCNGG 2 cut(s) 172, 179
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 180
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 1 cut(s) 184
BtgI CCRYGG 2 cut(s) 93, 185
BtsCI GGATG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 190
CviAII CATG 2 cut(s) 15, 186
CviJI RGCY 9 cut(s) 44, 114, 172, 184, 279, 283, 289, 308, 340
CviKI_1 RGCY 9 cut(s) 44, 114, 172, 184, 279, 283, 289, 308, 340
CviQI GTAC 1 cut(s) 190
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 185, 196
Eco24I GRGCYC 2 cut(s) 46, 116
Eco53kI GAGCTC 1 cut(s) 114
Eco72I CACGTG 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 172, 179
EcoT14I CCWWGG 2 cut(s) 185, 196
EcoT38I GRGCYC 2 cut(s) 46, 116
ErhI CCWWGG 2 cut(s) 185, 196
FaeI CATG 2 cut(s) 18, 189
FaiI YATR 5 cut(s) 16, 110, 134, 187, 212
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 2 cut(s) 111, 238
FatI CATG 2 cut(s) 14, 185
FauI CCCGC 1 cut(s) 215
FokI GGATG 1 cut(s) 306
FriOI GRGCYC 2 cut(s) 46, 116
FspBI CTAG 2 cut(s) 241, 280
HaeIII GGCC 1 cut(s) 184
Hin1II CATG 2 cut(s) 18, 189
Hpy166II GTNNAC 1 cut(s) 162
Hpy188I TCNGA 2 cut(s) 55, 293
Hpy188III TCNNGA 5 cut(s) 28, 117, 274, 319, 356
Hpy8I GTNNAC 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 2 cut(s) 18, 189
KpnI GGTACC 1 cut(s) 193
Kzo9I GATC 1 cut(s) 176
LmnI GCTCC 1 cut(s) 276
MaeI CTAG 2 cut(s) 241, 280
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 243
MalI GATC 1 cut(s) 178
MboI GATC 1 cut(s) 176
MboII GAAGA 2 cut(s) 262, 310
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 2 cut(s) 46, 116
MlsI TGGCCA 1 cut(s) 184
MluCI AATT 3 cut(s) 71, 138, 344
MluNI TGGCCA 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 1 cut(s) 248
Mox20I TGGCCA 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 23
MscI TGGCCA 1 cut(s) 184
MseI TTAA 2 cut(s) 68, 310
MslI CAYNNNNRTG 1 cut(s) 232
Msp20I TGGCCA 1 cut(s) 184
MspA1I CMGCKG 1 cut(s) 222
MspR9I CCNGG 2 cut(s) 174, 181
MvaI CCWGG 2 cut(s) 174, 181
NcoI CCATGG 1 cut(s) 185
NdeII GATC 1 cut(s) 176
NheI GCTAGC 1 cut(s) 279
NlaIII CATG 2 cut(s) 18, 189
NlaIV GGNNCC 2 cut(s) 178, 191
NspV TTCGAA 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PdmI GAANNNNTTC 1 cut(s) 23
PmaCI CACGTG 1 cut(s) 205
PmlI CACGTG 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 172, 179
PspCI CACGTG 1 cut(s) 205
PspGI CCWGG 2 cut(s) 172, 179
PspN4I GGNNCC 2 cut(s) 178, 191
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 232
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 68, 310
Sau3AI GATC 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 174, 181
SduI GDGCHC 2 cut(s) 46, 116
SetI ASST 8 cut(s) 116, 133, 207, 281, 285, 291, 342, 353
SfuI TTCGAA 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 232
Sse9I AATT 3 cut(s) 71, 138, 344
SsiI CCGC 1 cut(s) 222
SspMI CTAG 2 cut(s) 241, 280
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 2 cut(s) 172, 179
StyI CCWWGG 2 cut(s) 185, 196
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 327
TasI AATT 3 cut(s) 71, 138, 344
Tru1I TTAA 2 cut(s) 68, 310
Tru9I TTAA 2 cut(s) 68, 310
TspGWI ACGGA 1 cut(s) 82
XapI RAATTY 2 cut(s) 71, 344
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 2 cut(s) 241, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.