MD06G1155400.v1.1

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001670
Physical Location & Seq
Forward (+)
29804567 .. 29804917
351 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1155400.v1.1.491

Sequence Viewer

Length: 351 bp
ATGGTCGACCTCTCCCGGAAAGGCCAAAACGTCTACCTAAACGCCCTCAAGACCTCCGCGTGCCGCAAGTACGGCATCTCACGTGCGCCGAAGCTGGTCGAAATGATTGCGGCTCTACAGGAGTCAGACCGTGAGGCTCTTCTTCCCAAGCTCTGGGCCAAGTCGGTCCCAACCGCTTCGGGTATCGCCATTATCGTGATGTCGAAGCGTCATCGGTGTCCCCACATCACCACCACCGAGAATATTTGCGTGTACTGCCCCAGCGGTCCCGATTCGGACTTCGAGTACAGCACTCAATCTTACACTGGATACGAGCCTACTAGCATGCGCGCAATATTCCTGATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

117

Amino Acids

12.93

Weight (kDa)

8.72

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELP3_N PF23613 2 - 59 3.1e-16 ELP3 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 153
AccI GTMKAC 2 cut(s) 6, 33
AccII CGCG 2 cut(s) 59, 330
AciI CCGC 5 cut(s) 57, 64, 110, 174, 264
AcvI CACGTG 1 cut(s) 83
AfaI GTAC 3 cut(s) 71, 254, 287
AfiI CCNNNNNNNGG 1 cut(s) 153
AluBI AGCT 2 cut(s) 94, 151
AluI AGCT 2 cut(s) 94, 151
AoxI GGCC 2 cut(s) 22, 156
AspLEI GCGC 3 cut(s) 88, 330, 332
AspS9I GGNCC 3 cut(s) 156, 166, 266
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 2 cut(s) 166, 266
BbrPI CACGTG 1 cut(s) 83
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BciVI GTATCC 1 cut(s) 302
BcnI CCSGG 1 cut(s) 16
BfaI CTAG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 116
BfuI GTATCC 1 cut(s) 302
BisI GCNGC 2 cut(s) 64, 111
BlsI GCNGC 2 cut(s) 65, 112
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 2 cut(s) 166, 266
BmgT120I GGNCC 3 cut(s) 156, 166, 266
BmiI GGNNCC 2 cut(s) 168, 268
BmrFI CCNGG 1 cut(s) 16
BmsI GCATC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 16
BsaAI YACGTR 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 310
BsePI GCGCGC 1 cut(s) 328
BseYI CCCAGC 1 cut(s) 260
Bsh1236I CGCG 2 cut(s) 59, 330
BshFI GGCC 2 cut(s) 24, 158
BsiSI CCGG 1 cut(s) 16
BslFI GGGAC 3 cut(s) 152, 204, 252
BslI CCNNNNNNNGG 1 cut(s) 153
BsmFI GGGAC 3 cut(s) 152, 204, 252
BsnI GGCC 2 cut(s) 24, 158
BspACI CCGC 5 cut(s) 57, 64, 110, 174, 264
BspANI GGCC 2 cut(s) 24, 158
BspFNI CGCG 2 cut(s) 59, 330
BspLI GGNNCC 2 cut(s) 168, 268
BspQI GCTCTTC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 310
BssHII GCGCGC 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 144
BstBAI YACGTR 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 61, 326, 330
BstFNI CGCG 2 cut(s) 59, 330
BstHHI GCGC 3 cut(s) 88, 330, 332
BstMWI GCNNNNNNNGC 2 cut(s) 72, 255
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 116
BstUI CGCG 2 cut(s) 59, 330
BsuI GTATCC 1 cut(s) 302
BsuRI GGCC 2 cut(s) 24, 158
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 3 cut(s) 61, 326, 330
CfoI GCGC 3 cut(s) 88, 330, 332
Cfr13I GGNCC 3 cut(s) 156, 166, 266
CseI GACGC 1 cut(s) 197
Csp6I GTAC 3 cut(s) 70, 253, 286
CviAII CATG 1 cut(s) 325
CviJI RGCY 7 cut(s) 24, 94, 113, 137, 151, 158, 316
CviKI_1 RGCY 7 cut(s) 24, 94, 113, 137, 151, 158, 316
CviQI GTAC 3 cut(s) 70, 253, 286
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco47I GGWCC 2 cut(s) 166, 266
Eco72I CACGTG 1 cut(s) 83
FaeI CATG 1 cut(s) 328
FaiI YATR 1 cut(s) 326
FaqI GGGAC 3 cut(s) 152, 204, 252
FatI CATG 1 cut(s) 324
FblI GTMKAC 2 cut(s) 6, 33
Fnu4HI GCNGC 2 cut(s) 64, 111
Fsp4HI GCNGC 2 cut(s) 64, 111
FspBI CTAG 1 cut(s) 321
GlaI GCGC 3 cut(s) 87, 329, 331
GluI GCNGC 2 cut(s) 64, 111
GsaI CCCAGC 1 cut(s) 264
HaeIII GGCC 2 cut(s) 24, 158
HapII CCGG 1 cut(s) 16
HgaI GACGC 1 cut(s) 197
HhaI GCGC 3 cut(s) 88, 330, 332
Hin1II CATG 1 cut(s) 328
Hin6I GCGC 3 cut(s) 86, 328, 330
HinP1I GCGC 3 cut(s) 86, 328, 330
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 2 cut(s) 122, 272
HpaII CCGG 1 cut(s) 16
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 3 cut(s) 7, 34, 253
Hpy188I TCNGA 2 cut(s) 127, 277
Hpy188III TCNNGA 4 cut(s) 49, 196, 269, 340
Hpy8I GTNNAC 3 cut(s) 7, 34, 253
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 2 cut(s) 30, 82
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 255
HpySE526I ACGT 2 cut(s) 30, 82
Hsp92II CATG 1 cut(s) 328
HspAI GCGC 3 cut(s) 86, 328, 330
LguI GCTCTTC 1 cut(s) 144
LpnPI CCDG 6 cut(s) 29, 80, 104, 139, 274, 291
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 321
MaeII ACGT 2 cut(s) 30, 82
MboII GAAGA 2 cut(s) 131, 134
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 4 cut(s) 20, 56, 64, 127
MslI CAYNNNNRTG 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 264
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 1 cut(s) 16
MvnI CGCG 2 cut(s) 59, 330
MwoI GCNNNNNNNGC 2 cut(s) 72, 255
NciI CCSGG 1 cut(s) 16
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 2 cut(s) 168, 268
NspI RCATGY 1 cut(s) 328
PaeI GCATGC 1 cut(s) 328
PauI GCGCGC 1 cut(s) 328
PciSI GCTCTTC 1 cut(s) 144
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 14
PkrI GCNGC 2 cut(s) 65, 112
PleI GAGTC 1 cut(s) 130
PmaCI CACGTG 1 cut(s) 83
PmlI CACGTG 1 cut(s) 83
PpsI GAGTC 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 83
PspCI CACGTG 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 168, 268
PspPI GGNCC 3 cut(s) 156, 166, 266
PteI GCGCGC 1 cut(s) 328
RsaI GTAC 3 cut(s) 71, 254, 287
RsaNI GTAC 3 cut(s) 70, 253, 286
RseI CAYNNNNRTG 1 cut(s) 194
SalI GTCGAC 1 cut(s) 5
SapI GCTCTTC 1 cut(s) 144
SatI GCNGC 2 cut(s) 64, 111
Sau96I GGNCC 3 cut(s) 156, 166, 266
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 16
SetI ASST 7 cut(s) 12, 33, 39, 56, 85, 96, 153
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 116
SinI GGWCC 2 cut(s) 166, 266
SmiMI CAYNNNNRTG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
SphI GCATGC 1 cut(s) 328
SsiI CCGC 5 cut(s) 57, 64, 110, 174, 264
SspI AATATT 2 cut(s) 244, 336
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 2 cut(s) 33, 85
TaqI TCGA 4 cut(s) 6, 99, 203, 282
TaqII GACCGA 1 cut(s) 154
TatI WGTACW 2 cut(s) 252, 285
TauI GCSGC 2 cut(s) 66, 113
TfiI GAWTC 1 cut(s) 272
TscAI CASTG 1 cut(s) 310
TspRI CASTG 1 cut(s) 310
Van91I CCANNNNNTGG 1 cut(s) 153
VpaK11BI GGWCC 2 cut(s) 166, 266
XceI RCATGY 1 cut(s) 328
XmiI GTMKAC 2 cut(s) 6, 33
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.