Rmu_sc0016007.1_g000009

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016007.1
OG0001670
Physical Location & Seq
Forward (+)
32281 .. 32766
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016007.1_g000009.1.cds

Sequence Viewer

Length: 486 bp
atggcgactgcggtggtggtgccgccagccgatcccatccgtaagcaaccccggccgggccggggcgggttcgaagcccacggactatccgaagaagaggcccgcgtccgggcaatagccgaaatcgtcggctccatggtcgacctctcccggcgaggccaaaacgtcgacctaaacgcgctcaaaaccgccgcttgccgcaagtacggcctcgcacgtgcgccgaagctggtggagatgatcgccgcgcttccggaatcggaccgcgaggctctgctcccgaagctgaaagccaagccggtccgaaccgcctcgggaatcgccgtcgtggccgtgatgtcgaagcctcaccggtgccctcacatcgccaccaccgggaatatatgcgtgtactgccccggtgggccggactcggattttgagtatagtactcagtcttatactggatacgagccaactagcatgcgcgcaattcgagccaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

161

Amino Acids

17.3

Weight (kDa)

9.47

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 19, 354
AccI GTMKAC 2 cut(s) 141, 168
AccII CGCG 5 cut(s) 105, 179, 248, 267, 468
AccIII TCCGGA 1 cut(s) 253
AclWI GGATC 1 cut(s) 26
AcoI YGGCCR 2 cut(s) 53, 330
AcvI CACGTG 1 cut(s) 218
AfaI GTAC 3 cut(s) 206, 392, 430
AfiI CCNNNNNNNGG 5 cut(s) 56, 62, 108, 109, 375
AgeI ACCGGT 1 cut(s) 351
AjnI CCWGG 1 cut(s) 479
AluBI AGCT 2 cut(s) 229, 286
AluI AGCT 2 cut(s) 229, 286
AlwI GGATC 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 313
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 7 cut(s) 53, 58, 99, 157, 208, 330, 404
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
AsiGI ACCGGT 1 cut(s) 351
AspLEI GCGC 5 cut(s) 181, 223, 250, 468, 470
AspS9I GGNCC 5 cut(s) 58, 100, 262, 301, 404
AsuC2I CCSGG 7 cut(s) 52, 57, 62, 110, 151, 376, 399
AsuHPI GGTGA 1 cut(s) 341
AsuII TTCGAA 1 cut(s) 72
AvaI CYCGRG 1 cut(s) 313
AvaII GGWCC 2 cut(s) 262, 301
BaeGI GKGCMC 1 cut(s) 359
BanI GGYRCC 2 cut(s) 19, 354
BbrPI CACGTG 1 cut(s) 218
BccI CCATC 1 cut(s) 44
BceAI ACGGC 3 cut(s) 223, 308, 317
BciT130I CCWGG 1 cut(s) 481
BciVI GTATCC 1 cut(s) 440
BcnI CCSGG 7 cut(s) 52, 57, 62, 110, 151, 376, 399
BfaI CTAG 1 cut(s) 459
BfuI GTATCC 1 cut(s) 440
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 4 cut(s) 23, 192, 199, 246
BlsI GCNGC 4 cut(s) 24, 193, 200, 247
BmcAI AGTACT 1 cut(s) 430
Bme1390I CCNGG 8 cut(s) 52, 57, 62, 110, 151, 376, 399, 481
Bme18I GGWCC 2 cut(s) 262, 301
BmeT110I CYCGRG 1 cut(s) 313
BmgT120I GGNCC 5 cut(s) 58, 100, 262, 301, 404
BmiI GGNNCC 3 cut(s) 21, 133, 356
BmrFI CCNGG 8 cut(s) 52, 57, 62, 110, 151, 376, 399, 481
Bpu14I TTCGAA 1 cut(s) 72
BpuMI CCSGG 7 cut(s) 52, 57, 62, 110, 151, 376, 399
BsaAI YACGTR 1 cut(s) 218
BsaJI CCNNGG 6 cut(s) 50, 61, 79, 135, 312, 397
BsaWI WCCGGW 2 cut(s) 253, 351
Bsc4I CCNNNNNNNGG 5 cut(s) 56, 62, 108, 109, 375
Bse118I RCCGGY 2 cut(s) 298, 351
Bse1I ACTGG 1 cut(s) 448
BseAI TCCGGA 1 cut(s) 253
BseBI CCWGG 1 cut(s) 481
BseDI CCNNGG 6 cut(s) 50, 61, 79, 135, 312, 397
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 5 cut(s) 56, 62, 108, 109, 375
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 1 cut(s) 448
BsePI GCGCGC 1 cut(s) 466
BseSI GKGCMC 1 cut(s) 359
BseX3I CGGCCG 1 cut(s) 53
Bsh1236I CGCG 5 cut(s) 105, 179, 248, 267, 468
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 7 cut(s) 55, 60, 101, 159, 210, 332, 406
BshNI GGYRCC 2 cut(s) 19, 354
BshTI ACCGGT 1 cut(s) 351
BsiEI CGRYCG 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 313
BslI CCNNNNNNNGG 5 cut(s) 56, 62, 108, 109, 375
BsnI GGCC 7 cut(s) 55, 60, 101, 159, 210, 332, 406
BsoBI CYCGRG 1 cut(s) 313
Bsp119I TTCGAA 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 359
Bsp13I TCCGGA 1 cut(s) 253
Bsp143I GATC 2 cut(s) 31, 240
Bsp19I CCATGG 1 cut(s) 135
BspANI GGCC 7 cut(s) 55, 60, 101, 159, 210, 332, 406
BspCNI CTCAG 1 cut(s) 445
BspEI TCCGGA 1 cut(s) 253
BspFNI CGCG 5 cut(s) 105, 179, 248, 267, 468
BspLI GGNNCC 3 cut(s) 21, 133, 356
BspPI GGATC 1 cut(s) 26
BspT104I TTCGAA 1 cut(s) 72
BspT107I GGYRCC 2 cut(s) 19, 354
BsrFI RCCGGY 2 cut(s) 298, 351
BsrI ACTGG 1 cut(s) 448
BssAI RCCGGY 2 cut(s) 298, 351
BssECI CCNNGG 6 cut(s) 50, 61, 79, 135, 312, 397
BssHII GCGCGC 1 cut(s) 466
BssMI GATC 2 cut(s) 31, 240
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 481
Bst6I CTCTTC 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 218
BstBI TTCGAA 1 cut(s) 72
BstC8I GCNNGC 5 cut(s) 27, 103, 196, 464, 468
BstDEI CTNAG 1 cut(s) 432
BstDSI CCRYGG 2 cut(s) 79, 135
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 5 cut(s) 105, 179, 248, 267, 468
BstHHI GCGC 5 cut(s) 181, 223, 250, 468, 470
BstKTI GATC 2 cut(s) 34, 243
BstMBI GATC 2 cut(s) 31, 240
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 6 cut(s) 52, 207, 283, 329, 393, 476
BstNI CCWGG 1 cut(s) 481
BstNSI RCATGY 1 cut(s) 466
BstSCI CCNGG 8 cut(s) 50, 55, 60, 108, 149, 374, 397, 479
BstSLI GKGCMC 1 cut(s) 359
BstUI CGCG 5 cut(s) 105, 179, 248, 267, 468
BstZI CGGCCG 1 cut(s) 53
BsuI GTATCC 1 cut(s) 440
BsuRI GGCC 7 cut(s) 55, 60, 101, 159, 210, 332, 406
BtgI CCRYGG 2 cut(s) 79, 135
BtgZI GCGATG 1 cut(s) 349
BtsCI GGATG 1 cut(s) 36
Cac8I GCNNGC 5 cut(s) 27, 103, 196, 464, 468
CfoI GCGC 5 cut(s) 181, 223, 250, 468, 470
Cfr10I RCCGGY 2 cut(s) 298, 351
Cfr13I GGNCC 5 cut(s) 58, 100, 262, 301, 404
CpoI CGGWCCG 2 cut(s) 262, 301
CseI GACGC 1 cut(s) 94
Csp6I GTAC 3 cut(s) 205, 391, 429
CspAI ACCGGT 1 cut(s) 351
CspI CGGWCCG 2 cut(s) 262, 301
CviAII CATG 2 cut(s) 136, 463
CviQI GTAC 3 cut(s) 205, 391, 429
DdeI CTNAG 1 cut(s) 432
DpnI GATC 2 cut(s) 33, 242
DpnII GATC 2 cut(s) 31, 240
EaeI YGGCCR 2 cut(s) 53, 330
EagI CGGCCG 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EclXI CGGCCG 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 135
Eco47I GGWCC 2 cut(s) 262, 301
Eco52I CGGCCG 1 cut(s) 53
Eco72I CACGTG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 479
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 139, 466
FaiI YATR 6 cut(s) 137, 383, 385, 426, 441, 464
FatI CATG 2 cut(s) 135, 462
FauI CCCGC 2 cut(s) 59, 110
FblI GTMKAC 2 cut(s) 141, 168
Fnu4HI GCNGC 4 cut(s) 23, 192, 199, 246
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 4 cut(s) 23, 192, 199, 246
FspBI CTAG 1 cut(s) 459
GlaI GCGC 5 cut(s) 180, 222, 249, 467, 469
GluI GCNGC 4 cut(s) 23, 192, 199, 246
HaeIII GGCC 7 cut(s) 55, 60, 101, 159, 210, 332, 406
HgaI GACGC 1 cut(s) 94
HhaI GCGC 5 cut(s) 181, 223, 250, 468, 470
Hin1II CATG 2 cut(s) 139, 466
Hin6I GCGC 5 cut(s) 179, 221, 248, 466, 468
HinP1I GCGC 5 cut(s) 179, 221, 248, 466, 468
HincII GTYRAC 2 cut(s) 142, 169
HindII GTYRAC 2 cut(s) 142, 169
HinfI GANTC 3 cut(s) 257, 318, 410
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 3 cut(s) 142, 169, 391
Hpy188I TCNGA 4 cut(s) 91, 262, 305, 415
Hpy188III TCNNGA 3 cut(s) 254, 280, 315
Hpy8I GTNNAC 3 cut(s) 142, 169, 391
Hpy99I CGWCG 3 cut(s) 131, 170, 329
HpyCH4IV ACGT 2 cut(s) 165, 217
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 207, 283, 329, 393, 476
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 2 cut(s) 165, 217
Hsp92II CATG 2 cut(s) 139, 466
HspAI GCGC 5 cut(s) 179, 221, 248, 466, 468
Kpn2I TCCGGA 1 cut(s) 253
Kzo9I GATC 2 cut(s) 31, 240
LmnI GCTCC 2 cut(s) 137, 282
MaeI CTAG 1 cut(s) 459
MaeII ACGT 2 cut(s) 165, 217
MalI GATC 2 cut(s) 33, 242
MboI GATC 2 cut(s) 31, 240
MboII GAAGA 2 cut(s) 104, 107
MhlI GDGCHC 1 cut(s) 359
MluCI AATT 1 cut(s) 471
MlyI GAGTC 1 cut(s) 404
MnlI CCTC 8 cut(s) 91, 149, 155, 221, 262, 322, 357, 369
MroI TCCGGA 1 cut(s) 253
MspR9I CCNGG 8 cut(s) 52, 57, 62, 110, 151, 376, 399, 481
MvaI CCWGG 1 cut(s) 481
MvnI CGCG 5 cut(s) 105, 179, 248, 267, 468
MwoI GCNNNNNNNGC 6 cut(s) 52, 207, 283, 329, 393, 476
NciI CCSGG 7 cut(s) 52, 57, 62, 110, 151, 376, 399
NcoI CCATGG 1 cut(s) 135
NdeII GATC 2 cut(s) 31, 240
NlaIII CATG 2 cut(s) 139, 466
NlaIV GGNNCC 3 cut(s) 21, 133, 356
NspI RCATGY 1 cut(s) 466
NspV TTCGAA 1 cut(s) 72
PaeI GCATGC 1 cut(s) 466
PauI GCGCGC 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 2 cut(s) 257, 318
PinAI ACCGGT 1 cut(s) 351
PkrI GCNGC 4 cut(s) 24, 193, 200, 247
PleI GAGTC 1 cut(s) 404
PmaCI CACGTG 1 cut(s) 218
PmlI CACGTG 1 cut(s) 218
PpsI GAGTC 1 cut(s) 404
Ppu21I YACGTR 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 479
PspCI CACGTG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 479
PspN4I GGNNCC 3 cut(s) 21, 133, 356
PspPI GGNCC 5 cut(s) 58, 100, 262, 301, 404
PteI GCGCGC 1 cut(s) 466
RsaI GTAC 3 cut(s) 206, 392, 430
RsaNI GTAC 3 cut(s) 205, 391, 429
Rsr2I CGGWCCG 2 cut(s) 262, 301
RsrII CGGWCCG 2 cut(s) 262, 301
SalI GTCGAC 2 cut(s) 140, 167
SatI GCNGC 4 cut(s) 23, 192, 199, 246
Sau3AI GATC 2 cut(s) 31, 240
Sau96I GGNCC 5 cut(s) 58, 100, 262, 301, 404
ScaI AGTACT 1 cut(s) 430
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 8 cut(s) 52, 57, 62, 110, 151, 376, 399, 481
SduI GDGCHC 1 cut(s) 359
SetI ASST 7 cut(s) 147, 168, 174, 220, 231, 288, 485
SfuI TTCGAA 1 cut(s) 72
SgrAI CRCCGGYG 1 cut(s) 351
SinI GGWCC 2 cut(s) 262, 301
SphI GCATGC 1 cut(s) 466
Sse9I AATT 1 cut(s) 471
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 8 cut(s) 50, 55, 60, 108, 149, 374, 397, 479
StyI CCWWGG 1 cut(s) 135
TaiI ACGT 2 cut(s) 168, 220
TaqI TCGA 5 cut(s) 72, 141, 168, 341, 475
TasI AATT 1 cut(s) 471
TatI WGTACW 2 cut(s) 390, 428
TauI GCSGC 4 cut(s) 25, 194, 201, 248
TfiI GAWTC 2 cut(s) 257, 318
TspGWI ACGGA 2 cut(s) 29, 96
VpaK11BI GGWCC 2 cut(s) 262, 301
XceI RCATGY 1 cut(s) 466
XmiI GTMKAC 2 cut(s) 141, 168
XspI CTAG 1 cut(s) 459
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.