Rroxscaffold_3G00263980

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001670
Physical Location & Seq
Reverse (-)
57774558 .. 57777695
3138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00263980.1

Sequence Viewer

Length: 1704 bp
ATGGCGACTGCGGTGGTGGCGGCGCCAGCCGATCCTGTCCGTAAGCAACCCCGTCCGGGCCGGGGCGGGTTCGAAGCCCACGGATTATCCGAAGAAGAGGCCCGCGTCCGGGCAATAGCCGAAATCGTCGGCTCCATGGTCGACCTCTCCCGGCGAGGCCAAAACGTCGACCTAAACGCGCTCAAAACCGCCGCGTGCCGCAAGTACGGCCTCGCACGTGCGCCGAAGCTGGTGGAGATGATCGCCGCGCTTCCGGAATCGGACCGCGAGGCTCTGCTCCCGAAGCTGAAAGCCAAGCCGGTCCGAACCGCCTCCGGAATCGCCGTCGTGGCCGTGATGTCGAAGCCTCACCGGTGCCCTCACATCGCCACCACCGGGAATATATGCGTGTACTGCCCCGGTGGGCCCGACTCGGATTTTGAGTATAGTACTCAGTCTTATACTGGATACGAGCCTACTAGCATGCGCGCAATTCGAGCCAGGTACAACCCGTATGTTCAGGCTAGAGGCAGGATAGATCAGCTGAAGCGATTGGGTCATAGTGTAGACAAGGTTGAGTACATCTTAATGGGTGGTACATTCATGTCATTGCCAGCAGATTACCGTGATTACTTTATTAGAAATCTTCATGACGCATTATCTGGCCACACTTCTGCCAATGTTGAAGAGGCAGTAGCCTACTCGGAGCATGGGGCTACTAAATGTATTGGGATGACCATTGAAACGAGGCCAGATTACTGCCTTGGACCTCACTTGAGACAAATGCTTACTTATGGTTGTACACGGTTGGAGATTGGAGTTCAGAGTACATATGAAGATGTGGCTCGTGACACTAATAGAGGTCATACAGTAGCTGCAGTGGCTGATTGTTTCTGCTTGGCAAAGGATGCTGGTTTCAAGGTTGTTGCACACATGATGCCTGATCTCCCAAATGTAGGGGTTGAGAGAGACATGGAAAGTTTTCGGGAGTTTTTCGACAGCCCCCTGTTCAGAGCAGATGGACTTAAAATTTATCCAACACTTGTAATCCGTGGGACTGGACTTTATGAGCTCTGGAAAACTGGAAGGTATAGAAATTACCCACCCGAGCAACTTGTGGACATTGTGGCTAGGATCCTGGCCATGGTACCCCCTTGGACACGTGTTTATAGAGTTCAGCGGGACATTCCAATGCCTCTAGTTACTTCTGGGGTGGAGAAAGGAAATCTTCGGGAGCTAGCTTTAGCTCGGATGGAAGACTTGGGCTTAAAGTGTCGTGATGTTCGAACACGAGAAGCTGGAATTCAGGACATACATCACCAAATTAAGCCGGATGAAGTGGAACTCGTTCGTCGTGATTATACAGCAAATGAAGGTTGGGAAACATTTCTTTCATATGAAGATACACGCCAGGATATTCTAGTTGGATTGTTGCGATTAAGAAAATGTGGCAAAAACACTACCTCTCCTGAACTCATGGGGAAGTGTTCTATTGTTCGTGAACTCCATGTCTATGGAACTGCTGTTCCAGTTCATGGGCGGGATGCTGGCAAGCTGCAACACCAGGGCTATGGTACCCTGTTGATGGAAGAAGCCGAGCGAATTGCTACAAGGGAGCACAGATCAACAAAAATTGCTGTTATTTCAGGAGTAGGAACTCGTCACTACTATAGAAAATTAGGATATGAGCTTGAAGGACCTTACATGGTTAAACATCTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

567

Amino Acids

63.41

Weight (kDa)

8.74

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELP3_N PF23613 36 - 104 1.3e-25 ELP3 N-terminal domain
Radical_SAM PF04055 128 - 314 2.1e-11 Radical SAM superfamily
Radical_SAM_C PF16199 333 - 412 9.9e-23 Radical_SAM C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 1126, 1553
AccB1I GGYRCC 4 cut(s) 22, 354, 1126, 1553
AccB7I CCANNNNNTGG 1 cut(s) 1514
AccI GTMKAC 3 cut(s) 141, 168, 546
AccII CGCG 6 cut(s) 105, 179, 194, 248, 267, 468
AccIII TCCGGA 2 cut(s) 253, 314
AclWI GGATC 3 cut(s) 26, 1108, 1121
AcoI YGGCCR 3 cut(s) 330, 643, 1119
AcsI RAATTY 2 cut(s) 1008, 1281
AcuI CTGAAG 1 cut(s) 545
AcvI CACGTG 2 cut(s) 218, 1142
AcyI GRCGYC 1 cut(s) 23
AfiI CCNNNNNNNGG 9 cut(s) 56, 62, 108, 109, 375, 935, 1123, 1514, 1564
AflIII ACRYGT 2 cut(s) 1139, 1141
AgeI ACCGGT 1 cut(s) 351
AgsI TTSAA 4 cut(s) 665, 722, 898, 1673
AjnI CCWGG 4 cut(s) 479, 1116, 1389, 1542
AloI GAACNNNNNNTCC 4 cut(s) 1488, 1489, 1520, 1521
Alw21I GWGCWC 2 cut(s) 1053, 1599
Alw26I GTCTC 2 cut(s) 751, 942
AlwI GGATC 3 cut(s) 26, 1108, 1121
AlwNI CAGNNNCTG 2 cut(s) 854, 863
Ama87I CYCGRG 1 cut(s) 1085
Aor13HI TCCGGA 2 cut(s) 253, 314
AoxI GGCC 9 cut(s) 58, 99, 157, 208, 330, 404, 643, 728, 1119
ApaI GGGCCC 1 cut(s) 408
ApeKI GCWGC 2 cut(s) 854, 1534
ApoI RAATTY 2 cut(s) 1008, 1281
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
AsiGI ACCGGT 1 cut(s) 351
Asp700I GAANNNNTTC 3 cut(s) 960, 1326, 1365
Asp718I GGTACC 2 cut(s) 1126, 1553
AspLEI GCGC 6 cut(s) 25, 181, 223, 250, 468, 470
AspS9I GGNCC 8 cut(s) 58, 100, 262, 301, 404, 405, 746, 1676
AsuC2I CCSGG 6 cut(s) 57, 62, 110, 151, 376, 399
AsuHPI GGTGA 2 cut(s) 341, 1289
AsuII TTCGAA 2 cut(s) 72, 1264
AsuNHI GCTAGC 1 cut(s) 1216
AvaI CYCGRG 1 cut(s) 1085
AvaII GGWCC 4 cut(s) 262, 301, 746, 1676
BaeGI GKGCMC 2 cut(s) 359, 408
BalI TGGCCA 2 cut(s) 645, 1121
BamHI GGATCC 1 cut(s) 1113
BanI GGYRCC 4 cut(s) 22, 354, 1126, 1553
BanII GRGCYC 2 cut(s) 408, 1053
BauI CACGAG 2 cut(s) 825, 1269
BbrPI CACGTG 2 cut(s) 218, 1142
BbsI GAAGAC 1 cut(s) 1242
Bbv12I GWGCWC 2 cut(s) 1053, 1599
BbvI GCAGC 2 cut(s) 841, 1521
BccI CCATC 3 cut(s) 992, 1225, 1558
BceAI ACGGC 3 cut(s) 223, 308, 317
BcgI CGANNNNNNTGC 2 cut(s) 1565, 1599
BciT130I CCWGG 4 cut(s) 481, 1118, 1391, 1544
BciVI GTATCC 1 cut(s) 440
BcnI CCSGG 6 cut(s) 57, 62, 110, 151, 376, 399
BcoDI GTCTC 2 cut(s) 751, 942
BfaI CTAG 6 cut(s) 459, 504, 1110, 1178, 1217, 1400
BfmI CTRYAG 2 cut(s) 855, 1648
BfoI RGCGCY 1 cut(s) 26
BfuI GTATCC 1 cut(s) 440
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 6 cut(s) 21, 192, 199, 246, 855, 1535
BlsI GCNGC 6 cut(s) 22, 193, 200, 247, 856, 1536
BmcAI AGTACT 1 cut(s) 430
Bme18I GGWCC 4 cut(s) 262, 301, 746, 1676
BmeT110I CYCGRG 1 cut(s) 1085
BmgT120I GGNCC 8 cut(s) 58, 100, 262, 301, 404, 405, 746, 1676
BmiI GGNNCC 7 cut(s) 24, 133, 356, 406, 1115, 1128, 1555
BmsI GCATC 3 cut(s) 877, 906, 1513
BmtI GCTAGC 1 cut(s) 1220
BpiI GAAGAC 1 cut(s) 1242
Bpu14I TTCGAA 2 cut(s) 72, 1264
BpuEI CTTGAG 1 cut(s) 775
BpuMI CCSGG 6 cut(s) 57, 62, 110, 151, 376, 399
BsaAI YACGTR 2 cut(s) 218, 1142
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 9 cut(s) 61, 79, 135, 397, 742, 1030, 1122, 1133, 1543
BsaWI WCCGGW 3 cut(s) 253, 314, 351
BsaXI ACNNNNNCTCC 2 cut(s) 1429, 1459
Bsc4I CCNNNNNNNGG 9 cut(s) 56, 62, 108, 109, 375, 935, 1123, 1514, 1564
Bse118I RCCGGY 2 cut(s) 298, 351
Bse1I ACTGG 4 cut(s) 448, 1042, 1066, 1508
Bse3DI GCAATG 1 cut(s) 587
BseAI TCCGGA 2 cut(s) 253, 314
BseBI CCWGG 4 cut(s) 481, 1118, 1391, 1544
BseDI CCNNGG 9 cut(s) 61, 79, 135, 397, 742, 1030, 1122, 1133, 1543
BseGI GGATG 5 cut(s) 717, 892, 1236, 1318, 1528
BseLI CCNNNNNNNGG 9 cut(s) 56, 62, 108, 109, 375, 935, 1123, 1514, 1564
BseMI GCAATG 1 cut(s) 587
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 4 cut(s) 448, 1042, 1066, 1508
BsePI GCGCGC 1 cut(s) 466
BseSI GKGCMC 2 cut(s) 359, 408
BseXI GCAGC 2 cut(s) 841, 1521
Bsh1236I CGCG 6 cut(s) 105, 179, 194, 248, 267, 468
BshFI GGCC 9 cut(s) 60, 101, 159, 210, 332, 406, 645, 730, 1121
BshNI GGYRCC 4 cut(s) 22, 354, 1126, 1553
BshTI ACCGGT 1 cut(s) 351
BsiHKAI GWGCWC 2 cut(s) 1053, 1599
BsiHKCI CYCGRG 1 cut(s) 1085
BslFI GGGAC 2 cut(s) 1048, 1175
BslI CCNNNNNNNGG 9 cut(s) 56, 62, 108, 109, 375, 935, 1123, 1514, 1564
BsmAI GTCTC 2 cut(s) 751, 942
BsmFI GGGAC 2 cut(s) 1048, 1175
BsnI GGCC 9 cut(s) 60, 101, 159, 210, 332, 406, 645, 730, 1121
BsoBI CYCGRG 1 cut(s) 1085
Bsp119I TTCGAA 2 cut(s) 72, 1264
Bsp120I GGGCCC 1 cut(s) 404
Bsp1286I GDGCHC 4 cut(s) 359, 408, 1053, 1599
Bsp13I TCCGGA 2 cut(s) 253, 314
Bsp1407I TGTACA 1 cut(s) 779
Bsp143I GATC 6 cut(s) 31, 240, 517, 922, 1113, 1601
Bsp19I CCATGG 2 cut(s) 135, 1122
BspANI GGCC 9 cut(s) 60, 101, 159, 210, 332, 406, 645, 730, 1121
BspCNI CTCAG 1 cut(s) 445
BspEI TCCGGA 2 cut(s) 253, 314
BspFNI CGCG 6 cut(s) 105, 179, 194, 248, 267, 468
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 7 cut(s) 24, 133, 356, 406, 1115, 1128, 1555
BspMAI CTGCAG 1 cut(s) 859
BspOI GCTAGC 1 cut(s) 1220
BspPI GGATC 3 cut(s) 26, 1108, 1121
BspT104I TTCGAA 2 cut(s) 72, 1264
BspT107I GGYRCC 4 cut(s) 22, 354, 1126, 1553
BsrDI GCAATG 1 cut(s) 587
BsrFI RCCGGY 2 cut(s) 298, 351
BsrGI TGTACA 1 cut(s) 779
BsrI ACTGG 4 cut(s) 448, 1042, 1066, 1508
BssAI RCCGGY 2 cut(s) 298, 351
BssECI CCNNGG 9 cut(s) 61, 79, 135, 397, 742, 1030, 1122, 1133, 1543
BssHII GCGCGC 1 cut(s) 466
BssMI GATC 6 cut(s) 31, 240, 517, 922, 1113, 1601
BssNI GRCGYC 1 cut(s) 23
BssSI CACGAG 2 cut(s) 825, 1269
BssT1I CCWWGG 4 cut(s) 135, 742, 1122, 1133
Bst2BI CACGAG 2 cut(s) 825, 1269
Bst2UI CCWGG 4 cut(s) 481, 1118, 1391, 1544
Bst4CI ACNGT 3 cut(s) 605, 786, 850
Bst6I CTCTTC 2 cut(s) 90, 660
BstACI GRCGYC 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 887
BstAUI TGTACA 1 cut(s) 779
BstBAI YACGTR 2 cut(s) 218, 1142
BstBI TTCGAA 2 cut(s) 72, 1264
BstC8I GCNNGC 9 cut(s) 27, 103, 196, 464, 468, 594, 1218, 1528, 1532
BstDEI CTNAG 1 cut(s) 432
BstDSI CCRYGG 4 cut(s) 79, 135, 1030, 1122
BstF5I GGATG 5 cut(s) 717, 892, 1236, 1318, 1528
BstFNI CGCG 6 cut(s) 105, 179, 194, 248, 267, 468
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 6 cut(s) 25, 181, 223, 250, 468, 470
BstKTI GATC 6 cut(s) 34, 243, 520, 925, 1116, 1604
BstMAI GTCTC 2 cut(s) 751, 942
BstMBI GATC 6 cut(s) 31, 240, 517, 922, 1113, 1601
BstMWI GCNNNNNNNGC 9 cut(s) 17, 26, 207, 283, 329, 393, 476, 860, 887
BstNI CCWGG 4 cut(s) 481, 1118, 1391, 1544
BstNSI RCATGY 1 cut(s) 466
BstSFI CTRYAG 2 cut(s) 855, 1648
BstSLI GKGCMC 2 cut(s) 359, 408
BstUI CGCG 6 cut(s) 105, 179, 194, 248, 267, 468
BstV1I GCAGC 2 cut(s) 841, 1521
BstV2I GAAGAC 1 cut(s) 1242
BstX2I RGATCY 1 cut(s) 1113
BstXI CCANNNNNNTGG 2 cut(s) 1493, 1550
BstYI RGATCY 1 cut(s) 1113
BsuI GTATCC 1 cut(s) 440
BsuRI GGCC 9 cut(s) 60, 101, 159, 210, 332, 406, 645, 730, 1121
BtgI CCRYGG 4 cut(s) 79, 135, 1030, 1122
BtgZI GCGATG 1 cut(s) 349
BtsCI GGATG 5 cut(s) 717, 892, 1236, 1318, 1528
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 1 cut(s) 864
Cac8I GCNNGC 9 cut(s) 27, 103, 196, 464, 468, 594, 1218, 1528, 1532
CaiI CAGNNNCTG 2 cut(s) 854, 863
CciI TCATGA 1 cut(s) 628
CfoI GCGC 6 cut(s) 25, 181, 223, 250, 468, 470
Cfr10I RCCGGY 2 cut(s) 298, 351
Cfr13I GGNCC 8 cut(s) 58, 100, 262, 301, 404, 405, 746, 1676
CpoI CGGWCCG 2 cut(s) 262, 301
CseI GACGC 2 cut(s) 94, 641
CspAI ACCGGT 1 cut(s) 351
CspI CGGWCCG 2 cut(s) 262, 301
DdeI CTNAG 1 cut(s) 432
DinI GGCGCC 1 cut(s) 24
DpnI GATC 6 cut(s) 33, 242, 519, 924, 1115, 1603
DpnII GATC 6 cut(s) 31, 240, 517, 922, 1113, 1601
EaeI YGGCCR 3 cut(s) 330, 643, 1119
Eam1104I CTCTTC 2 cut(s) 90, 660
EarI CTCTTC 2 cut(s) 90, 660
Ecl136II GAGCTC 1 cut(s) 1051
Eco130I CCWWGG 4 cut(s) 135, 742, 1122, 1133
Eco24I GRGCYC 2 cut(s) 408, 1053
Eco47I GGWCC 4 cut(s) 262, 301, 746, 1676
Eco53kI GAGCTC 1 cut(s) 1051
Eco57I CTGAAG 1 cut(s) 545
Eco72I CACGTG 2 cut(s) 218, 1142
Eco88I CYCGRG 1 cut(s) 1085
EcoICRI GAGCTC 1 cut(s) 1051
EcoO109I RGGNCCY 1 cut(s) 1676
EcoRI GAATTC 1 cut(s) 1281
EcoRII CCWGG 4 cut(s) 479, 1116, 1389, 1542
EcoT14I CCWWGG 4 cut(s) 135, 742, 1122, 1133
EcoT38I GRGCYC 2 cut(s) 408, 1053
EgeI GGCGCC 1 cut(s) 24
EheI GGCGCC 1 cut(s) 24
ErhI CCWWGG 4 cut(s) 135, 742, 1122, 1133
FalI AAGNNNNNCTT 2 cut(s) 1191, 1223
FaqI GGGAC 2 cut(s) 1048, 1175
FauI CCCGC 4 cut(s) 59, 110, 1152, 1512
FauNDI CATATG 2 cut(s) 811, 1375
FblI GTMKAC 3 cut(s) 141, 168, 546
Fnu4HI GCNGC 6 cut(s) 21, 192, 199, 246, 855, 1535
FokI GGATG 5 cut(s) 724, 899, 1243, 1325, 1535
FriOI GRGCYC 2 cut(s) 408, 1053
Fsp4HI GCNGC 6 cut(s) 21, 192, 199, 246, 855, 1535
FspBI CTAG 6 cut(s) 459, 504, 1110, 1178, 1217, 1400
GlaI GCGC 6 cut(s) 24, 180, 222, 249, 467, 469
GluI GCNGC 6 cut(s) 21, 192, 199, 246, 855, 1535
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 9 cut(s) 60, 101, 159, 210, 332, 406, 645, 730, 1121
HgaI GACGC 2 cut(s) 94, 641
HhaI GCGC 6 cut(s) 25, 181, 223, 250, 468, 470
Hin1I GRCGYC 1 cut(s) 23
Hin6I GCGC 6 cut(s) 23, 179, 221, 248, 466, 468
HinP1I GCGC 6 cut(s) 23, 179, 221, 248, 466, 468
HincII GTYRAC 2 cut(s) 142, 169
HindII GTYRAC 2 cut(s) 142, 169
HinfI GANTC 3 cut(s) 257, 318, 410
HphI GGTGA 2 cut(s) 341, 1289
Hpy166II GTNNAC 7 cut(s) 142, 169, 391, 547, 782, 1099, 1481
Hpy188I TCNGA 8 cut(s) 91, 262, 305, 415, 685, 804, 992, 1230
Hpy8I GTNNAC 7 cut(s) 142, 169, 391, 547, 782, 1099, 1481
Hpy99I CGWCG 4 cut(s) 131, 170, 329, 1335
HpyAV CCTTC 3 cut(s) 1059, 1346, 1667
HpyCH4III ACNGT 3 cut(s) 605, 786, 850
HpyCH4IV ACGT 3 cut(s) 165, 217, 1141
HpyCH4V TGCA 3 cut(s) 857, 908, 1537
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 26, 207, 283, 329, 393, 476, 860, 887
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 3 cut(s) 165, 217, 1141
Hsp92I GRCGYC 1 cut(s) 23
HspAI GCGC 6 cut(s) 23, 179, 221, 248, 466, 468
KasI GGCGCC 1 cut(s) 22
Kpn2I TCCGGA 2 cut(s) 253, 314
KpnI GGTACC 2 cut(s) 1130, 1557
Kzo9I GATC 6 cut(s) 31, 240, 517, 922, 1113, 1601
LmnI GCTCC 5 cut(s) 137, 282, 685, 1213, 1594
Lsp1109I GCAGC 2 cut(s) 841, 1521
LweI GCATC 3 cut(s) 877, 906, 1513
MaeI CTAG 6 cut(s) 459, 504, 1110, 1178, 1217, 1400
MaeII ACGT 3 cut(s) 165, 217, 1141
MaeIII GTNAC 3 cut(s) 827, 1180, 1640
MalI GATC 6 cut(s) 33, 242, 519, 924, 1115, 1603
MboI GATC 6 cut(s) 31, 240, 517, 922, 1113, 1601
MboII GAAGA 9 cut(s) 104, 107, 617, 677, 827, 1199, 1247, 1391, 1580
MflI RGATCY 1 cut(s) 1113
MhlI GDGCHC 4 cut(s) 359, 408, 1053, 1599
MlsI TGGCCA 2 cut(s) 645, 1121
MluCI AATT 8 cut(s) 471, 1008, 1075, 1281, 1302, 1581, 1611, 1655
MluNI TGGCCA 2 cut(s) 645, 1121
Mly113I GGCGCC 1 cut(s) 23
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 3 cut(s) 768, 1040, 1384
Mox20I TGGCCA 2 cut(s) 645, 1121
MroI TCCGGA 2 cut(s) 253, 314
MroXI GAANNNNTTC 3 cut(s) 960, 1326, 1365
MscI TGGCCA 2 cut(s) 645, 1121
MseI TTAA 6 cut(s) 566, 1005, 1247, 1305, 1418, 1689
MslI CAYNNNNRTG 3 cut(s) 566, 1169, 1491
Msp20I TGGCCA 2 cut(s) 645, 1121
MspA1I CMGCKG 2 cut(s) 523, 1159
MvaI CCWGG 4 cut(s) 481, 1118, 1391, 1544
MvnI CGCG 6 cut(s) 105, 179, 194, 248, 267, 468
MwoI GCNNNNNNNGC 9 cut(s) 17, 26, 207, 283, 329, 393, 476, 860, 887
NarI GGCGCC 1 cut(s) 23
NciI CCSGG 6 cut(s) 57, 62, 110, 151, 376, 399
NcoI CCATGG 2 cut(s) 135, 1122
NdeI CATATG 2 cut(s) 811, 1375
NdeII GATC 6 cut(s) 31, 240, 517, 922, 1113, 1601
NheI GCTAGC 1 cut(s) 1216
NlaIV GGNNCC 7 cut(s) 24, 133, 356, 406, 1115, 1128, 1555
NmeAIII GCCGAG 1 cut(s) 1600
NmuCI GTSAC 2 cut(s) 827, 1640
NspI RCATGY 1 cut(s) 466
NspV TTCGAA 2 cut(s) 72, 1264
PaeI GCATGC 1 cut(s) 466
PagI TCATGA 1 cut(s) 628
PauI GCGCGC 1 cut(s) 466
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 1261
PdmI GAANNNNTTC 3 cut(s) 960, 1326, 1365
PfeI GAWTC 2 cut(s) 257, 318
PflMI CCANNNNNTGG 1 cut(s) 1514
PinAI ACCGGT 1 cut(s) 351
PkrI GCNGC 6 cut(s) 22, 193, 200, 247, 856, 1536
PleI GAGTC 1 cut(s) 404
PluTI GGCGCC 1 cut(s) 26
PmaCI CACGTG 2 cut(s) 218, 1142
PmlI CACGTG 2 cut(s) 218, 1142
PpsI GAGTC 1 cut(s) 404
Ppu21I YACGTR 2 cut(s) 218, 1142
PpuMI RGGWCCY 1 cut(s) 1676
Psp124BI GAGCTC 1 cut(s) 1053
Psp5II RGGWCCY 1 cut(s) 1676
Psp6I CCWGG 4 cut(s) 479, 1116, 1389, 1542
PspCI CACGTG 2 cut(s) 218, 1142
PspGI CCWGG 4 cut(s) 479, 1116, 1389, 1542
PspN4I GGNNCC 7 cut(s) 24, 133, 356, 406, 1115, 1128, 1555
PspOMI GGGCCC 1 cut(s) 404
PspPI GGNCC 8 cut(s) 58, 100, 262, 301, 404, 405, 746, 1676
PspPPI RGGWCCY 1 cut(s) 1676
PstI CTGCAG 1 cut(s) 859
PstNI CAGNNNCTG 2 cut(s) 854, 863
PsuI RGATCY 1 cut(s) 1113
PteI GCGCGC 1 cut(s) 466
PvuII CAGCTG 1 cut(s) 523
RseI CAYNNNNRTG 3 cut(s) 566, 1169, 1491
Rsr2I CGGWCCG 2 cut(s) 262, 301
RsrII CGGWCCG 2 cut(s) 262, 301
SacI GAGCTC 1 cut(s) 1053
SalI GTCGAC 2 cut(s) 140, 167
SaqAI TTAA 6 cut(s) 566, 1005, 1247, 1305, 1418, 1689
SatI GCNGC 6 cut(s) 21, 192, 199, 246, 855, 1535
Sau3AI GATC 6 cut(s) 31, 240, 517, 922, 1113, 1601
Sau96I GGNCC 8 cut(s) 58, 100, 262, 301, 404, 405, 746, 1676
ScaI AGTACT 1 cut(s) 430
SchI GAGTC 1 cut(s) 404
SduI GDGCHC 4 cut(s) 359, 408, 1053, 1599
SfaNI GCATC 3 cut(s) 877, 906, 1513
SfcI CTRYAG 2 cut(s) 855, 1648
SfoI GGCGCC 1 cut(s) 24
SfuI TTCGAA 2 cut(s) 72, 1264
SgrAI CRCCGGYG 1 cut(s) 351
SinI GGWCC 4 cut(s) 262, 301, 746, 1676
SmiMI CAYNNNNRTG 3 cut(s) 566, 1169, 1491
SmlI CTYRAG 1 cut(s) 754
SmoI CTYRAG 1 cut(s) 754
SphI GCATGC 1 cut(s) 466
Sse9I AATT 8 cut(s) 471, 1008, 1075, 1281, 1302, 1581, 1611, 1655
SspDI GGCGCC 1 cut(s) 22
SspMI CTAG 6 cut(s) 459, 504, 1110, 1178, 1217, 1400
SstI GAGCTC 1 cut(s) 1053
StyI CCWWGG 4 cut(s) 135, 742, 1122, 1133
TaaI ACNGT 3 cut(s) 605, 786, 850
TaiI ACGT 3 cut(s) 168, 220, 1144
TaqI TCGA 7 cut(s) 72, 141, 168, 341, 475, 975, 1264
TasI AATT 8 cut(s) 471, 1008, 1075, 1281, 1302, 1581, 1611, 1655
TatI WGTACW 5 cut(s) 390, 428, 558, 779, 806
TauI GCSGC 4 cut(s) 23, 194, 201, 248
TfiI GAWTC 2 cut(s) 257, 318
Tru1I TTAA 6 cut(s) 566, 1005, 1247, 1305, 1418, 1689
Tru9I TTAA 6 cut(s) 566, 1005, 1247, 1305, 1418, 1689
TscAI CASTG 1 cut(s) 864
TseFI GTSAC 2 cut(s) 827, 1640
TseI GCWGC 2 cut(s) 854, 1534
Tsp45I GTSAC 2 cut(s) 827, 1640
TspDTI ATGAA 8 cut(s) 571, 617, 828, 1329, 1362, 1365, 1392, 1502
TspGWI ACGGA 3 cut(s) 29, 96, 1019
TspRI CASTG 1 cut(s) 864
Van91I CCANNNNNTGG 1 cut(s) 1514
VpaK11BI GGWCC 4 cut(s) 262, 301, 746, 1676
XapI RAATTY 2 cut(s) 1008, 1281
XceI RCATGY 1 cut(s) 466
XmiI GTMKAC 3 cut(s) 141, 168, 546
XmnI GAANNNNTTC 3 cut(s) 960, 1326, 1365
XspI CTAG 6 cut(s) 459, 504, 1110, 1178, 1217, 1400
ZrmI AGTACT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.