MD06G1154200.v1.1

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001670
Physical Location & Seq
Forward (+)
29751923 .. 29752125
203 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1154200.v1.1.491

Sequence Viewer

Length: 183 bp
ATGGCGACTGCAGTGCTGCCAGTATCCGAGCCCGCCAGAAAGCAACCCCGAGCTGGTCGGGGCGGATTCGAGGCCCATGGACTATCCGAAGAAGAGGCCCGGGTCAGGGCCATCGCCGAAATCGTCAGCTCCATGGTCAACCTCTCCCGGAAGGACCAAAACGTCGATCTAAACGCCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

61

Amino Acids

6.44

Weight (kDa)

6.55

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AciI CCGC 2 cut(s) 33, 63
AfiI CCNNNNNNNGG 3 cut(s) 53, 105, 106
AluBI AGCT 2 cut(s) 53, 129
AluI AGCT 2 cut(s) 53, 129
Ama87I CYCGRG 2 cut(s) 48, 99
AoxI GGCC 3 cut(s) 72, 96, 108
ApeKI GCWGC 1 cut(s) 16
AspS9I GGNCC 4 cut(s) 73, 97, 108, 154
AsuC2I CCSGG 3 cut(s) 100, 101, 148
AvaI CYCGRG 2 cut(s) 48, 99
AvaII GGWCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 3
BccI CCATC 1 cut(s) 119
BcgI CGANNNNNNTGC 1 cut(s) 29
BciVI GTATCC 1 cut(s) 34
BcnI CCSGG 3 cut(s) 100, 101, 148
BfaI CTAG 1 cut(s) 181
BfmI CTRYAG 1 cut(s) 9
BfuI GTATCC 1 cut(s) 34
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 3 cut(s) 100, 101, 148
Bme18I GGWCC 1 cut(s) 154
BmeT110I CYCGRG 2 cut(s) 48, 99
BmgT120I GGNCC 4 cut(s) 73, 97, 108, 154
BmrFI CCNGG 3 cut(s) 100, 101, 148
BpuMI CCSGG 3 cut(s) 100, 101, 148
BsaJI CCNNGG 3 cut(s) 76, 99, 132
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 105, 106
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 76, 99, 132
BseLI CCNNNNNNNGG 3 cut(s) 53, 105, 106
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 3
BshFI GGCC 3 cut(s) 74, 98, 110
BsiHKCI CYCGRG 2 cut(s) 48, 99
BsiSI CCGG 2 cut(s) 100, 148
BslI CCNNNNNNNGG 3 cut(s) 53, 105, 106
BsnI GGCC 3 cut(s) 74, 98, 110
BsoBI CYCGRG 2 cut(s) 48, 99
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 166
Bsp19I CCATGG 2 cut(s) 76, 132
BspACI CCGC 2 cut(s) 33, 63
BspANI GGCC 3 cut(s) 74, 98, 110
BspMAI CTGCAG 1 cut(s) 13
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 3 cut(s) 76, 99, 132
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 2 cut(s) 76, 132
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 33
BstDSI CCRYGG 2 cut(s) 76, 132
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstSCI CCNGG 3 cut(s) 98, 99, 146
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 3
BsuI GTATCC 1 cut(s) 34
BsuRI GGCC 3 cut(s) 74, 98, 110
BtgI CCRYGG 2 cut(s) 76, 132
BtgZI GCGATG 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 33
Cfr13I GGNCC 4 cut(s) 73, 97, 108, 154
Cfr9I CCCGGG 1 cut(s) 99
CviAII CATG 2 cut(s) 77, 133
CviJI RGCY 6 cut(s) 31, 53, 74, 98, 110, 129
CviKI_1 RGCY 6 cut(s) 31, 53, 74, 98, 110, 129
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EciI GGCGGA 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 76, 132
Eco24I GRGCYC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 154
Eco88I CYCGRG 2 cut(s) 48, 99
EcoT14I CCWWGG 2 cut(s) 76, 132
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 2 cut(s) 76, 132
FaeI CATG 2 cut(s) 80, 136
FaiI YATR 2 cut(s) 78, 134
FatI CATG 2 cut(s) 76, 132
FauI CCCGC 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 17
FspBI CTAG 1 cut(s) 181
GluI GCNGC 1 cut(s) 17
HaeIII GGCC 3 cut(s) 74, 98, 110
HapII CCGG 2 cut(s) 100, 148
Hin1II CATG 2 cut(s) 80, 136
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 1 cut(s) 66
HpaII CCGG 2 cut(s) 100, 148
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 28, 88
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 80, 136
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 6 cut(s) 33, 39, 49, 91, 113, 161
Lsp1109I GCAGC 1 cut(s) 3
MaeI CTAG 1 cut(s) 181
MaeII ACGT 1 cut(s) 162
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 2 cut(s) 101, 104
MhlI GDGCHC 1 cut(s) 33
MnlI CCTC 3 cut(s) 64, 88, 152
MspI CCGG 2 cut(s) 100, 148
MspR9I CCNGG 3 cut(s) 100, 101, 148
NciI CCSGG 3 cut(s) 100, 101, 148
NcoI CCATGG 2 cut(s) 76, 132
NdeII GATC 1 cut(s) 166
NlaIII CATG 2 cut(s) 80, 136
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 66
PfoI TCCNGGA 1 cut(s) 146
PkrI GCNGC 1 cut(s) 18
PspPI GGNCC 4 cut(s) 73, 97, 108, 154
PstI CTGCAG 1 cut(s) 13
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 4 cut(s) 73, 97, 108, 154
ScrFI CCNGG 3 cut(s) 100, 101, 148
SduI GDGCHC 1 cut(s) 33
SetI ASST 4 cut(s) 55, 131, 144, 165
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 154
SmaI CCCGGG 1 cut(s) 101
SsiI CCGC 2 cut(s) 33, 63
SspMI CTAG 1 cut(s) 181
StyD4I CCNGG 3 cut(s) 98, 99, 146
StyI CCWWGG 2 cut(s) 76, 132
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 69, 165
TfiI GAWTC 1 cut(s) 66
TscAI CASTG 1 cut(s) 18
TseI GCWGC 1 cut(s) 16
TspMI CCCGGG 1 cut(s) 99
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 154
XmaI CCCGGG 1 cut(s) 99
XspI CTAG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.