MD00G1179900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0001670
Physical Location & Seq
Reverse (-)
42199362 .. 42200711
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1179900.v1.1.491

Sequence Viewer

Length: 207 bp
ATGCATAGTCGTTGCCCACAGATTACCGTGATTACAATATTAGAAATCTGCACGTTGCCCGCGGATTACCATGATTACTTTATTAGGCACGATGCCTTATTTGGCCACTGTGGAAGAGGCAGTTGCCTACTCTGCACGGTGCTACTAAATGTTGATTATGGTACCCTGGAGGAGGCCGAGCGGATTGCTAGCGGGGAGCATCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.68

Weight (kDa)

5.58

Isoelectric Point (pI)

55.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 161
AccBSI CCGCTC 1 cut(s) 181
AccII CGCG 1 cut(s) 62
AciI CCGC 4 cut(s) 60, 62, 181, 192
AcoI YGGCCR 1 cut(s) 103
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 172
AjnI CCWGG 1 cut(s) 165
AoxI GGCC 2 cut(s) 103, 174
Asp718I GGTACC 1 cut(s) 161
AsuNHI GCTAGC 1 cut(s) 188
BalI TGGCCA 1 cut(s) 105
BanI GGYRCC 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 1 cut(s) 167
BfaI CTAG 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 82
BmtI GCTAGC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 188
Bsa29I ATCGAT 1 cut(s) 202
BsaJI CCNNGG 2 cut(s) 60, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 172
BseBI CCWGG 1 cut(s) 167
BseCI ATCGAT 1 cut(s) 202
BseDI CCNNGG 2 cut(s) 60, 165
BseLI CCNNNNNNNGG 1 cut(s) 172
BseRI GAGGAG 1 cut(s) 185
BsgI GTGCAG 2 cut(s) 34, 118
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 2 cut(s) 105, 176
BshNI GGYRCC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 172
BsnI GGCC 2 cut(s) 105, 176
BspACI CCGC 4 cut(s) 60, 62, 181, 192
BspANI GGCC 2 cut(s) 105, 176
BspDI ATCGAT 1 cut(s) 202
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 163
BspOI GCTAGC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 161
BsrBI CCGCTC 1 cut(s) 181
BssECI CCNNGG 2 cut(s) 60, 165
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 3 cut(s) 28, 110, 139
Bst6I CTCTTC 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 60, 190
BstDSI CCRYGG 1 cut(s) 60
BstENI CCTNNNNNAGG 1 cut(s) 170
BstFNI CGCG 1 cut(s) 62
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstUI CGCG 1 cut(s) 62
Bsu15I ATCGAT 1 cut(s) 202
BsuRI GGCC 2 cut(s) 105, 176
BsuTUI ATCGAT 1 cut(s) 202
BtgI CCRYGG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 60, 190
Cfr42I CCGCGG 1 cut(s) 63
ClaI ATCGAT 1 cut(s) 202
Csp6I GTAC 1 cut(s) 162
CviAII CATG 1 cut(s) 71
CviJI RGCY 2 cut(s) 105, 176
CviKI_1 RGCY 2 cut(s) 105, 176
CviQI GTAC 1 cut(s) 162
EaeI YGGCCR 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 165
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 74
FaiI YATR 3 cut(s) 6, 72, 159
FatI CATG 1 cut(s) 70
FauI CCCGC 2 cut(s) 67, 185
FspBI CTAG 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 2 cut(s) 105, 176
Hin1II CATG 1 cut(s) 74
HpyCH4III ACNGT 3 cut(s) 28, 110, 139
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 3 cut(s) 4, 51, 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 1 cut(s) 74
KpnI GGTACC 1 cut(s) 165
KspI CCGCGG 1 cut(s) 63
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 2 cut(s) 152, 179
LweI GCATC 1 cut(s) 82
MaeI CTAG 1 cut(s) 189
MaeII ACGT 1 cut(s) 53
MbiI CCGCTC 1 cut(s) 181
MboII GAAGA 1 cut(s) 126
MlsI TGGCCA 1 cut(s) 105
MluNI TGGCCA 1 cut(s) 105
MnlI CCTC 3 cut(s) 110, 163, 166
Mox20I TGGCCA 1 cut(s) 105
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 105
Msp20I TGGCCA 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 132
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 163
NmeAIII GCCGAG 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 163
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SacII CCGCGG 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 167
SetI ASST 1 cut(s) 56
SfaNI GCATC 1 cut(s) 82
Sfr303I CCGCGG 1 cut(s) 63
SgrBI CCGCGG 1 cut(s) 63
SsiI CCGC 4 cut(s) 60, 62, 181, 192
SspI AATATT 1 cut(s) 39
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 3 cut(s) 28, 110, 139
TaiI ACGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 202
TscAI CASTG 1 cut(s) 113
TspRI CASTG 1 cut(s) 113
XagI CCTNNNNNAGG 1 cut(s) 170
XspI CTAG 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.