MD06G1156600.v1.1

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001670
Physical Location & Seq
Forward (+)
29910001 .. 29910416
416 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1156600.v1.1.491

Sequence Viewer

Length: 252 bp
ATGGTCTTAACAAACACGGACTGTAGCATAGAAACGGCAGTTCCTGTTAAACCTCTTTTCCTCCCCTCACTCTTCTCTCCCATGGCAACTGCAGTGCTGCCAGTATCCGTGCCCGCCAGAAAGCAAGCCCGACCCGGTCAGGGCGGATTCGAGGCCCATGGACTATCCGAAGAAGAGGCCTGGGTCCGAGCCATCGCCGAAATCGTCAGCTCCATGGTCGACCTCTCCCGGAAGACCAAAACGTCGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Radical_SAM Radical_SAM_C

Protein Analysis

84

Amino Acids

8.86

Weight (kDa)

6.55

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 241
AccI GTMKAC 2 cut(s) 219, 245
AciI CCGC 2 cut(s) 114, 144
AfiI CCNNNNNNNGG 1 cut(s) 140
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 2 cut(s) 153, 177
ApeKI GCWGC 1 cut(s) 97
AspS9I GGNCC 2 cut(s) 154, 184
AsuC2I CCSGG 2 cut(s) 135, 229
AvaII GGWCC 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 181
BciVI GTATCC 1 cut(s) 115
BcnI CCSGG 2 cut(s) 135, 229
BfmI CTRYAG 2 cut(s) 22, 90
BfuI GTATCC 1 cut(s) 115
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 3 cut(s) 135, 181, 229
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 154, 184
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 3 cut(s) 135, 181, 229
BpiI GAAGAC 1 cut(s) 239
BpuMI CCSGG 2 cut(s) 135, 229
BsaJI CCNNGG 4 cut(s) 81, 157, 180, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 4 cut(s) 81, 157, 180, 213
BseLI CCNNNNNNNGG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 114
BseXI GCAGC 1 cut(s) 84
BshFI GGCC 2 cut(s) 155, 179
BsiSI CCGG 2 cut(s) 135, 229
BslI CCNNNNNNNGG 1 cut(s) 140
BsnI GGCC 2 cut(s) 155, 179
Bsp1286I GDGCHC 1 cut(s) 114
Bsp19I CCATGG 3 cut(s) 81, 157, 213
BspACI CCGC 2 cut(s) 114, 144
BspANI GGCC 2 cut(s) 155, 179
BspLI GGNNCC 1 cut(s) 185
BspMAI CTGCAG 1 cut(s) 94
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 4 cut(s) 81, 157, 180, 213
BssT1I CCWWGG 3 cut(s) 81, 157, 213
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 2 cut(s) 77, 168
BstC8I GCNNGC 2 cut(s) 114, 126
BstDSI CCRYGG 3 cut(s) 81, 157, 213
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 3 cut(s) 133, 179, 227
BstSFI CTRYAG 2 cut(s) 22, 90
BstSLI GKGCMC 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 84
BstV2I GAAGAC 1 cut(s) 239
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 2 cut(s) 155, 179
BtgI CCRYGG 3 cut(s) 81, 157, 213
BtgZI GCGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 114, 126
CaiI CAGNNNCTG 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 154, 184
CviAII CATG 3 cut(s) 82, 158, 214
CviJI RGCY 5 cut(s) 128, 155, 179, 191, 210
CviKI_1 RGCY 5 cut(s) 128, 155, 179, 191, 210
DrdI GACNNNNNNGTC 1 cut(s) 241
DseDI GACNNNNNNGTC 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 77, 168
EarI CTCTTC 2 cut(s) 77, 168
EciI GGCGGA 1 cut(s) 159
Eco130I CCWWGG 3 cut(s) 81, 157, 213
Eco147I AGGCCT 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 179
EcoT14I CCWWGG 3 cut(s) 81, 157, 213
ErhI CCWWGG 3 cut(s) 81, 157, 213
FaeI CATG 3 cut(s) 85, 161, 217
FaiI YATR 4 cut(s) 29, 83, 159, 215
FatI CATG 3 cut(s) 81, 157, 213
FauI CCCGC 1 cut(s) 121
FblI GTMKAC 2 cut(s) 219, 245
Fnu4HI GCNGC 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 98
GluI GCNGC 1 cut(s) 98
HaeIII GGCC 2 cut(s) 155, 179
HapII CCGG 2 cut(s) 135, 229
Hin1II CATG 3 cut(s) 85, 161, 217
HincII GTYRAC 2 cut(s) 220, 246
HindII GTYRAC 2 cut(s) 220, 246
HinfI GANTC 1 cut(s) 147
HpaII CCGG 2 cut(s) 135, 229
Hpy166II GTNNAC 2 cut(s) 220, 246
Hpy188I TCNGA 2 cut(s) 169, 188
Hpy8I GTNNAC 2 cut(s) 220, 246
Hpy99I CGWCG 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 3 cut(s) 85, 161, 217
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 8 cut(s) 57, 114, 125, 130, 148, 166, 193, 242
Lsp1109I GCAGC 1 cut(s) 84
MaeII ACGT 1 cut(s) 242
MboII GAAGA 4 cut(s) 64, 182, 185, 244
MhlI GDGCHC 1 cut(s) 114
MnlI CCTC 6 cut(s) 63, 71, 76, 145, 169, 233
MseI TTAA 2 cut(s) 8, 48
MspI CCGG 2 cut(s) 135, 229
MspR9I CCNGG 3 cut(s) 135, 181, 229
MvaI CCWGG 1 cut(s) 181
NciI CCSGG 2 cut(s) 135, 229
NcoI CCATGG 3 cut(s) 81, 157, 213
NlaIII CATG 3 cut(s) 85, 161, 217
NlaIV GGNNCC 1 cut(s) 185
PceI AGGCCT 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 135
PfoI TCCNGGA 1 cut(s) 227
PkrI GCNGC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 2 cut(s) 154, 184
PstI CTGCAG 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 44
PsyI GACNNNGTC 1 cut(s) 135
SalI GTCGAC 2 cut(s) 218, 244
SaqAI TTAA 2 cut(s) 8, 48
SatI GCNGC 1 cut(s) 98
Sau96I GGNCC 2 cut(s) 154, 184
ScrFI CCNGG 3 cut(s) 135, 181, 229
SduI GDGCHC 1 cut(s) 114
SetI ASST 5 cut(s) 55, 212, 225, 245, 251
SfcI CTRYAG 2 cut(s) 22, 90
SinI GGWCC 1 cut(s) 184
SseBI AGGCCT 1 cut(s) 179
SsiI CCGC 2 cut(s) 114, 144
StuI AGGCCT 1 cut(s) 179
StyD4I CCNGG 3 cut(s) 133, 179, 227
StyI CCWWGG 3 cut(s) 81, 157, 213
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 1 cut(s) 245
TaqI TCGA 3 cut(s) 150, 219, 245
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 2 cut(s) 8, 48
Tru9I TTAA 2 cut(s) 8, 48
TscAI CASTG 1 cut(s) 99
TseI GCWGC 1 cut(s) 97
TspGWI ACGGA 2 cut(s) 32, 97
TspRI CASTG 1 cut(s) 99
Tth111I GACNNNGTC 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 184
XmiI GTMKAC 2 cut(s) 219, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.