Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001622

Physical Location & Seq

Genomic Coordinates Reverse (-)

34952973 .. 34954060

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATCAAGCCTGTTTTGACAGAGCAATTTATGTGTGAATTTCGTAGCAGAGAAAGGGCTGGCTTGGAGTCTGATGGACATGAATTGGACTGCAAAAAACATCCCGGAAGTTTCAAGGAGGGTTTTACACAGACTCAAGTTAGTAGTCTTGCAGTGAAAGATAAGTTGCTTGTTGTTGGAGGATTTACGGGAGAACTAATTTGTAAGCATCTTGATCAACCAGGAGTTAGCTTTTGTTCGAGGACAACTGCTGATGGTAATGCCATTATAAATGGTATCGAGATTTATGACAATCCCAGCTCACTTTGCAGCCTCAAGCAATGGTCATTCAAGAAACTGATTTTCCTTGTCATTTGTCAACAACATTTTGATATTCTTCGGATAGCTGCTGAAGCGGGAGGCTTGCTCATGGATGCCATGATCTGCAACCTAGATGGTTCTAAAGAAAATCCATCATCAGTTCCTTTAATGGTTGTTGAGAACGGTTGTGGCAGTCCTTGCATAGACTTGAGGCAGGTCAGCTGCTCTGAGCTAGCAGCTGCTGCAAAAACAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2415 WD40

Protein Analysis

186

Amino Acids

20.09

Weight (kDa)

5.57

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55680 AT3G13340 AT3G13340 AT3G13340
fragaria_vesca	FvH4_3g41630 FvH4_3g41640 FvH4_3g41650
malus_domestica	MD03G1042700.v1.1 MD03G1216600.v1.1 MD05G1255200.v1.1 MD11G1044000.v1.1 MD11G1045800.v1.1
prunus_persica	Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1
pyrus_communis	pycom03g03290 pycom11g03710
rosa_chinensis	RchiOBHm_Chr5g0074671 RchiOBHm_Chr5g0074681 RchiOBHm_Chr5g0074701 RchiOBHm_Chr5g0074741
rosa_laevigata	RLG00000036497
rosa_multiflora	Rmu_sc0000909.1_g000023 Rmu_sc0000909.1_g000027 Rmu_sc0008028.1_g000001 Rmu_sc0019386.1_g000002 Rmu_sc0019386.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006840 Rroxscaffold_1G00006860 Rroxscaffold_1G00006870
rosa_rugosa	Rorug05G0433500 Rorug05G0433600
rosa_samantha	Rh5AG490700 Rh5AG490800 Rh5AG491100 Rh5BG511800 Rh5BG512000 Rh5BG512300 Rh5BG512400 Rh5BG512500 Rh5CG535600 Rh5CG535700 Rh5CG536000 Rh5CG536100 Rh5DG524200 Rh5DG524500
rosa_wichuraiana	Rw5G045450 Rw5G045460 Rw5G045490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	269
Acc36I	ACCTGC	1 cut(s)	505
AciI	CCGC	1 cut(s)	395
AcsI	RAATTY	1 cut(s)	38
AcuI	CTGAAG	1 cut(s)	411
AgsI	TTSAA	2 cut(s)	115, 331
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	6 cut(s)	231, 300, 386, 522, 532, 539
AluI	AGCT	6 cut(s)	231, 300, 386, 522, 532, 539
AlwNI	CAGNNNCTG	1 cut(s)	542
ApeKI	GCWGC	6 cut(s)	309, 386, 522, 536, 539, 542
ApoI	RAATTY	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	105
AsuNHI	GCTAGC	1 cut(s)	532
BbvI	GCAGC	6 cut(s)	321, 373, 509, 526, 529, 548
BccI	CCATC	4 cut(s)	68, 248, 428, 460
BciT130I	CCWGG	1 cut(s)	222
BclI	TGATCA	2 cut(s)	3, 214
BcnI	CCSGG	1 cut(s)	105
BfaI	CTAG	2 cut(s)	431, 533
BfuAI	ACCTGC	1 cut(s)	505
BisI	GCNGC	6 cut(s)	310, 387, 523, 537, 540, 543
BlsI	GCNGC	6 cut(s)	311, 388, 524, 538, 541, 544
Bme1390I	CCNGG	2 cut(s)	105, 222
BmrFI	CCNGG	2 cut(s)	105, 222
BmsI	GCATC	2 cut(s)	217, 403
BmtI	GCTAGC	1 cut(s)	536
BplI	GAGNNNNNCTC	2 cut(s)	390, 422
BpuEI	CTTGAG	3 cut(s)	120, 299, 529
BpuMI	CCSGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	100, 418
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	519
BseXI	GCAGC	6 cut(s)	321, 373, 509, 526, 529, 548
BseYI	CCCAGC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	3, 214, 420
BspACI	CCGC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	505
BspOI	GCTAGC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	326
BssMI	GATC	3 cut(s)	3, 214, 420
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	485, 553
BstAPI	GCANNNNNTGC	2 cut(s)	498, 542
BstC8I	GCNNGC	3 cut(s)	61, 404, 534
BstDEI	CTNAG	1 cut(s)	528
BstF5I	GGATG	2 cut(s)	100, 418
BstKTI	GATC	3 cut(s)	6, 217, 423
BstMBI	GATC	3 cut(s)	3, 214, 420
BstMWI	GCNNNNNNNGC	4 cut(s)	306, 392, 498, 542
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	2 cut(s)	103, 220
BstV1I	GCAGC	6 cut(s)	321, 373, 509, 526, 529, 548
BtsCI	GGATG	2 cut(s)	100, 418
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	3 cut(s)	61, 404, 534
CaiI	CAGNNNCTG	1 cut(s)	542
CviAII	CATG	3 cut(s)	80, 409, 418
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	3 cut(s)	5, 216, 422
DpnII	GATC	3 cut(s)	3, 214, 420
Eco57I	CTGAAG	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	220
FaeI	CATG	3 cut(s)	83, 412, 421
FaiI	YATR	7 cut(s)	32, 81, 269, 288, 410, 419, 503
FatI	CATG	3 cut(s)	79, 408, 417
FauI	CCCGC	1 cut(s)	388
FbaI	TGATCA	2 cut(s)	3, 214
Fnu4HI	GCNGC	6 cut(s)	310, 387, 523, 537, 540, 543
FokI	GGATG	2 cut(s)	87, 425
Fsp4HI	GCNGC	6 cut(s)	310, 387, 523, 537, 540, 543
FspBI	CTAG	2 cut(s)	431, 533
GluI	GCNGC	6 cut(s)	310, 387, 523, 537, 540, 543
GsaI	CCCAGC	1 cut(s)	300
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	3 cut(s)	83, 412, 421
HincII	GTYRAC	1 cut(s)	359
HindII	GTYRAC	1 cut(s)	359
HinfI	GANTC	2 cut(s)	68, 133
HpaII	CCGG	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	4 cut(s)	73, 381, 529, 557
Hpy188III	TCNNGA	3 cut(s)	212, 280, 331
Hpy8I	GTNNAC	1 cut(s)	359
HpyCH4III	ACNGT	2 cut(s)	485, 553
HpyCH4V	TGCA	6 cut(s)	93, 152, 309, 426, 501, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	306, 392, 498, 542
HpyF3I	CTNAG	1 cut(s)	528
Hsp92II	CATG	3 cut(s)	83, 412, 421
Ksp22I	TGATCA	2 cut(s)	3, 214
Kzo9I	GATC	3 cut(s)	3, 214, 420
LpnPI	CCDG	7 cut(s)	24, 45, 118, 207, 234, 310, 500
Lsp1109I	GCAGC	6 cut(s)	321, 373, 509, 526, 529, 548
LweI	GCATC	2 cut(s)	217, 403
MaeI	CTAG	2 cut(s)	431, 533
MalI	GATC	3 cut(s)	5, 216, 422
MboI	GATC	3 cut(s)	3, 214, 420
MboII	GAAGA	1 cut(s)	368
MluCI	AATT	4 cut(s)	26, 38, 83, 198
MlyI	GAGTC	2 cut(s)	77, 127
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	6 cut(s)	112, 173, 234, 323, 392, 504
MseI	TTAA	1 cut(s)	467
MspA1I	CMGCKG	2 cut(s)	522, 539
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	105, 222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	4 cut(s)	306, 392, 498, 542
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	3 cut(s)	3, 214, 420
NheI	GCTAGC	1 cut(s)	532
NlaIII	CATG	3 cut(s)	83, 412, 421
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	6 cut(s)	311, 388, 524, 538, 541, 544
PleI	GAGTC	2 cut(s)	76, 127
PpsI	GAGTC	2 cut(s)	76, 127
PsiI	TTATAA	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	542
PvuII	CAGCTG	2 cut(s)	522, 539
SaqAI	TTAA	1 cut(s)	467
SatI	GCNGC	6 cut(s)	310, 387, 523, 537, 540, 543
Sau3AI	GATC	3 cut(s)	3, 214, 420
SchI	GAGTC	2 cut(s)	77, 127
ScrFI	CCNGG	2 cut(s)	105, 222
SetI	ASST	8 cut(s)	233, 302, 388, 432, 519, 524, 534, 541
SfaNI	GCATC	2 cut(s)	217, 403
SmlI	CTYRAG	3 cut(s)	135, 314, 508
SmoI	CTYRAG	3 cut(s)	135, 314, 508
Sse9I	AATT	4 cut(s)	26, 38, 83, 198
SsiI	CCGC	1 cut(s)	395
SspMI	CTAG	2 cut(s)	431, 533
StyD4I	CCNGG	2 cut(s)	103, 220
TaaI	ACNGT	2 cut(s)	485, 553
TaqI	TCGA	2 cut(s)	239, 279
TasI	AATT	4 cut(s)	26, 38, 83, 198
Tru1I	TTAA	1 cut(s)	467
Tru9I	TTAA	1 cut(s)	467
TscAI	CASTG	1 cut(s)	159
TseI	GCWGC	6 cut(s)	309, 386, 522, 536, 539, 542
TspDTI	ATGAA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	159
XapI	RAATTY	1 cut(s)	38
XspI	CTAG	2 cut(s)	431, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.