Rmu_sc0019386.1_g000003

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019386.1
OG0001622
Physical Location & Seq
Reverse (-)
15052 .. 15408
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019386.1_g000003.1.cds

Sequence Viewer

Length: 357 bp
atggatgagattcttgtagacggtgacgcctttgctactgggaagcaggacaaaacctgtcgggtttgggatgttcgaaacctatccaagtcagttgctgttttaaagggaaaccttggagctattcggtcaatccgttatacttctgatggtcagtatatgatgatggcagagccagcagactttgtgcatgtctatgatgtgaaaagtgggtacgagaaggagcaggaaatcgatttgtttggcgagatatctggcatatcattcagtccagacacagagtcgcttttcattggagtatgggatcgtacatatggtagtcttctcgagtatggaagacaaaagtgtgttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2415 WD40

Protein Analysis

118

Amino Acids

13.23

Weight (kDa)

4.69

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 18
AclWI GGATC 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 2 cut(s) 215, 310
AhdI GACNNNNNGTC 1 cut(s) 280
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AlwI GGATC 1 cut(s) 312
AlwNI CAGNNNCTG 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 35
AsuII TTCGAA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 326
BbsI GAAGAC 2 cut(s) 314, 343
BccI CCATC 2 cut(s) 143, 160
BmeRI GACNNNNNGTC 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 326
BmrI ACTGGG 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 48
BpiI GAAGAC 2 cut(s) 314, 343
Bpu14I TTCGAA 1 cut(s) 76
Bsa29I ATCGAT 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 43
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 2 cut(s) 10, 76
BseNI ACTGG 1 cut(s) 43
BshVI ATCGAT 1 cut(s) 234
BsiHKCI CYCGRG 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 326
Bsp119I TTCGAA 1 cut(s) 76
Bsp143I GATC 1 cut(s) 304
BspDI ATCGAT 1 cut(s) 234
BspPI GGATC 1 cut(s) 312
BspT104I TTCGAA 1 cut(s) 76
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 1 cut(s) 304
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 27
BstBI TTCGAA 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 177
BstF5I GGATG 2 cut(s) 10, 76
BstKTI GATC 1 cut(s) 307
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 194
BstV2I GAAGAC 2 cut(s) 314, 343
Bsu15I ATCGAT 1 cut(s) 234
BsuTUI ATCGAT 1 cut(s) 234
BtsCI GGATG 2 cut(s) 10, 76
Cac8I GCNNGC 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 234
CseI GACGC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 214, 309
CviAII CATG 1 cut(s) 191
CviJI RGCY 2 cut(s) 122, 175
CviKI_1 RGCY 2 cut(s) 122, 175
CviQI GTAC 2 cut(s) 214, 309
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
DraI TTTAAA 1 cut(s) 105
DriI GACNNNNNGTC 1 cut(s) 280
Eam1105I GACNNNNNGTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 115
Eco32I GATATC 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 326
EcoRV GATATC 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 1 cut(s) 194
FatI CATG 1 cut(s) 190
FauNDI CATATG 1 cut(s) 313
FblI GTMKAC 1 cut(s) 18
FokI GGATG 2 cut(s) 17, 83
HgaI GACGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 1 cut(s) 194
HinfI GANTC 2 cut(s) 10, 281
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 272, 326
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 1 cut(s) 194
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 2 cut(s) 119, 223
LpnPI CCDG 7 cut(s) 24, 32, 70, 189, 212, 240, 285
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 2 cut(s) 314, 348
MlyI GAGTC 1 cut(s) 290
MseI TTAA 2 cut(s) 104, 355
MslI CAYNNNNRTG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeI CATATG 1 cut(s) 313
NdeII GATC 1 cut(s) 304
NlaIII CATG 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 23
NspI RCATGY 1 cut(s) 194
NspV TTCGAA 1 cut(s) 76
PaeR7I CTCGAG 1 cut(s) 326
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PfeI GAWTC 1 cut(s) 10
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 98
RsaI GTAC 2 cut(s) 215, 310
RsaNI GTAC 2 cut(s) 214, 309
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 2 cut(s) 104, 355
Sau3AI GATC 1 cut(s) 304
SchI GAGTC 1 cut(s) 290
SetI ASST 4 cut(s) 59, 84, 117, 124
Sfr274I CTCGAG 1 cut(s) 326
SfuI TTCGAA 1 cut(s) 76
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 3 cut(s) 76, 234, 327
TaqII GACCGA 1 cut(s) 117
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 2 cut(s) 104, 355
Tru9I TTAA 2 cut(s) 104, 355
TseFI GTSAC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 280
TspGWI ACGGA 1 cut(s) 125
XceI RCATGY 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.