Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001622

Physical Location & Seq

Genomic Coordinates Forward (+)

2645325 .. 2650501

Gene Structure 5177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G035100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGTCCCATTACGCTGGGTACGTGGAAGATGAATATGAAATGGAAGATGTAGATGATGATATGGATGACGAGTTTCGTGGTAGAGAAATGGGCGGCTCAGATTCTGATGTTGATGAATATGACTACTTGAATAGCAAAGCAGCTGATACAACTGCTGCTCAAGCAAGAAAAGGAAAAGACATCCAAGGTATTCCTTGGGATAGACTTAGCATTACTAGAGAAAAATACCGGCAAACTAGGTTAGAACAATACAAGAATTATGAAAACATTCCTAATTCTGGAGAAGGGTCAGGGAAGGATGGCAAAGATACAAAGAAAGGATCTTTATATTATGAGTTCAGAAGAAATGCTAGATCAGTGAAATCAACCATTCTTCATTTCCAGTTGCGTAACTTGGTCTGGGCTACTTCCAAGCATGATGTGTACCTTATGTCACATTTTTCTGTCATTCATTGGTCTTCATTACGTTGCACAAAGTCTGAGGTTCTCAATGTTTCAGGGCATGTGGCACCATCAGAGAAACATCCTGGAAGTCTCTTGGAGGGATTTTCGCAGACTCAAGTTAGTACTCTTGCAGTAAAAGATAAGTTGCTAGTTGCTGGAGGATTCCAGGGGGAACTTATTTGCAAGCATCTGGATCGGCCTGGAGTTAGCTTTTGTTCAAGGACAACGTATGATGATAATGCCATCACAAATGCTGTTGAGATTTATGACAGTCCCAGTGGGGCAGTTCACTTTACAGCCTCAAATAATGATTGTGGAGTGAGAGACTTTGACATGGAGAAATTTCAGCTCACTAAGCATTTCCGTTTTCCTTGGCCAGTGAATCATACTTCTCTGAGTCCCGATGGTAAACTTCTTGTAATCGTTGGAGACAATCCGGATGGAATGTTAGTAAACTCTCAAACTGGAAAGACAGTAATGCCTTTATCTGGGCACTTGGATTTCTCGTTTGCGTCAGCATGGCATCCTGATGGTATCACCTTTGCTACTGGGAACCAAGACAAAACCTGTCGGATTTGGGATGTTCGAAACCTATCCAAGTCAGTTGCTGTTTTGAAGGGCAACCTTGGTGCTATTCGGTCAATCCGATATACTTCTGATGGCCGGTATATGATGATGGCAGAGCCAGCAGACTTTGTTCATGTCTATGATGTGAAAAGTGGGTACGAGAAGGAACAGGAAATTGATTTCTTTGGCGAGATATCTGGCATATCATTCAGTCCAGACACAGAGTCACTTTTTATCGGAGTATGGGATCGTACGTATGGTAGTCTTCTAGAGTATGGCCGATACCGGAATTACTCTTACCTCGATTCTCTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2415 WD40

Protein Analysis

443

Amino Acids

49.87

Weight (kDa)

5.42

Isoelectric Point (pI)

27.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55680 AT3G13340 AT3G13340 AT3G13340
fragaria_vesca	FvH4_3g41630 FvH4_3g41640 FvH4_3g41650
malus_domestica	MD03G1042700.v1.1 MD03G1216600.v1.1 MD05G1255200.v1.1 MD11G1044000.v1.1 MD11G1045800.v1.1
prunus_persica	Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1
pyrus_communis	pycom03g03290 pycom11g03710
rosa_chinensis	RchiOBHm_Chr5g0074671 RchiOBHm_Chr5g0074681 RchiOBHm_Chr5g0074701 RchiOBHm_Chr5g0074741
rosa_laevigata	RLG00000036497
rosa_multiflora	Rmu_sc0000909.1_g000023 Rmu_sc0000909.1_g000027 Rmu_sc0008028.1_g000001 Rmu_sc0019386.1_g000002 Rmu_sc0019386.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006840 Rroxscaffold_1G00006860 Rroxscaffold_1G00006870
rosa_rugosa	Rorug05G0433500 Rorug05G0433600
rosa_samantha	Rh5AG490700 Rh5AG490800 Rh5AG491100 Rh5BG511800 Rh5BG512000 Rh5BG512300 Rh5BG512400 Rh5BG512500 Rh5CG535600 Rh5CG535700 Rh5CG536000 Rh5CG536100 Rh5DG524200 Rh5DG524500
rosa_wichuraiana	Rw5G045450 Rw5G045460 Rw5G045490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	508
AccIII	TCCGGA	1 cut(s)	880
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	3 cut(s)	328, 645, 1266
AcoI	YGGCCR	3 cut(s)	818, 1105, 1288
AcsI	RAATTY	1 cut(s)	785
AfaI	GTAC	5 cut(s)	20, 425, 568, 1169, 1264
AfiI	CCNNNNNNNGG	2 cut(s)	278, 932
AgsI	TTSAA	3 cut(s)	130, 663, 1060
AhdI	GACNNNNNGTC	1 cut(s)	1234
AjnI	CCWGG	3 cut(s)	526, 609, 643
AluBI	AGCT	3 cut(s)	143, 654, 793
AluI	AGCT	3 cut(s)	143, 654, 793
Alw26I	GTCTC	3 cut(s)	539, 762, 867
AlwI	GGATC	3 cut(s)	328, 645, 1266
AlwNI	CAGNNNCTG	2 cut(s)	104, 1052
Aor13HI	TCCGGA	1 cut(s)	880
AoxI	GGCC	4 cut(s)	641, 818, 1105, 1288
ApeKI	GCWGC	2 cut(s)	140, 155
ApoI	RAATTY	1 cut(s)	785
Asp700I	GAANNNNTTC	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	973
AsuII	TTCGAA	1 cut(s)	1030
BaeGI	GKGCMC	1 cut(s)	939
BalI	TGGCCA	1 cut(s)	820
BanI	GGYRCC	1 cut(s)	508
BbsI	GAAGAC	2 cut(s)	450, 1268
BbvI	GCAGC	2 cut(s)	142, 152
BccI	CCATC	8 cut(s)	293, 520, 695, 842, 878, 968, 1097, 1114
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciT130I	CCWGG	3 cut(s)	528, 611, 645
BcoDI	GTCTC	3 cut(s)	539, 762, 867
BfaI	CTAG	5 cut(s)	216, 237, 351, 593, 1280
BisI	GCNGC	3 cut(s)	94, 141, 156
BlsI	GCNGC	3 cut(s)	95, 142, 157
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	3 cut(s)	528, 611, 645
BmeRI	GACNNNNNGTC	1 cut(s)	1234
BmiI	GGNNCC	2 cut(s)	510, 998
BmrFI	CCNGG	3 cut(s)	528, 611, 645
BmrI	ACTGGG	2 cut(s)	714, 1002
BmsI	GCATC	2 cut(s)	640, 976
BmuI	ACTGGG	2 cut(s)	714, 1002
BpiI	GAAGAC	2 cut(s)	450, 1268
BpmI	CTGGAG	3 cut(s)	300, 621, 666
Bpu14I	TTCGAA	1 cut(s)	1030
BpuEI	CTTGAG	2 cut(s)	144, 543
BsaAI	YACGTR	2 cut(s)	22, 1266
BsaJI	CCNNGG	5 cut(s)	184, 194, 610, 815, 1069
BsaWI	WCCGGW	2 cut(s)	880, 1296
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 932
Bse118I	RCCGGY	2 cut(s)	228, 1107
Bse1I	ACTGG	5 cut(s)	382, 720, 821, 913, 997
BseAI	TCCGGA	1 cut(s)	880
BseBI	CCWGG	3 cut(s)	528, 611, 645
BseDI	CCNNGG	5 cut(s)	184, 194, 610, 815, 1069
BseGI	GGATG	7 cut(s)	70, 180, 304, 523, 889, 967, 1030
BseLI	CCNNNNNNNGG	2 cut(s)	278, 932
BseMII	CTCAG	3 cut(s)	111, 471, 830
BseNI	ACTGG	5 cut(s)	382, 720, 821, 913, 997
BseSI	GKGCMC	1 cut(s)	939
BseXI	GCAGC	2 cut(s)	142, 152
BseYI	CCCAGC	1 cut(s)	14
BshFI	GGCC	4 cut(s)	643, 820, 1107, 1290
BshNI	GGYRCC	1 cut(s)	508
BsiSI	CCGG	4 cut(s)	229, 881, 1108, 1297
BsiWI	CGTACG	1 cut(s)	1262
BslFI	GGGAC	2 cut(s)	702, 828
BslI	CCNNNNNNNGG	2 cut(s)	278, 932
BsmAI	GTCTC	3 cut(s)	539, 762, 867
BsmFI	GGGAC	2 cut(s)	702, 828
BsnI	GGCC	4 cut(s)	643, 820, 1107, 1290
Bsp119I	TTCGAA	1 cut(s)	1030
Bsp1286I	GDGCHC	1 cut(s)	939
Bsp13I	TCCGGA	1 cut(s)	880
Bsp143I	GATC	4 cut(s)	320, 353, 637, 1258
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	4 cut(s)	643, 820, 1107, 1290
BspCNI	CTCAG	3 cut(s)	110, 472, 831
BspEI	TCCGGA	1 cut(s)	880
BspLI	GGNNCC	2 cut(s)	510, 998
BspPI	GGATC	3 cut(s)	328, 645, 1266
BspT104I	TTCGAA	1 cut(s)	1030
BspT107I	GGYRCC	1 cut(s)	508
BsrFI	RCCGGY	2 cut(s)	228, 1107
BsrI	ACTGG	5 cut(s)	382, 720, 821, 913, 997
BssAI	RCCGGY	2 cut(s)	228, 1107
BssECI	CCNNGG	5 cut(s)	184, 194, 610, 815, 1069
BssMI	GATC	4 cut(s)	320, 353, 637, 1258
BssT1I	CCWWGG	4 cut(s)	184, 194, 815, 1069
Bst2UI	CCWGG	3 cut(s)	528, 611, 645
Bst4CI	ACNGT	2 cut(s)	716, 919
BstBAI	YACGTR	2 cut(s)	22, 1266
BstBI	TTCGAA	1 cut(s)	1030
BstC8I	GCNNGC	2 cut(s)	629, 1131
BstDEI	CTNAG	5 cut(s)	97, 206, 480, 798, 839
BstF5I	GGATG	7 cut(s)	70, 180, 304, 523, 889, 967, 1030
BstKTI	GATC	4 cut(s)	323, 356, 640, 1261
BstMAI	GTCTC	3 cut(s)	539, 762, 867
BstMBI	GATC	4 cut(s)	320, 353, 637, 1258
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 799, 1130
BstNI	CCWGG	3 cut(s)	528, 611, 645
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	3 cut(s)	526, 609, 643
BstSLI	GKGCMC	1 cut(s)	939
BstSNI	TACGTA	1 cut(s)	1266
BstV1I	GCAGC	2 cut(s)	142, 152
BstV2I	GAAGAC	2 cut(s)	450, 1268
BstX2I	RGATCY	1 cut(s)	320
BstXI	CCANNNNNNTGG	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	4 cut(s)	643, 820, 1107, 1290
BtsCI	GGATG	7 cut(s)	70, 180, 304, 523, 889, 967, 1030
BtsIMutI	CAGTG	3 cut(s)	363, 727, 828
Cac8I	GCNNGC	2 cut(s)	629, 1131
CaiI	CAGNNNCTG	2 cut(s)	104, 1052
Cfr10I	RCCGGY	2 cut(s)	228, 1107
CseI	GACGC	1 cut(s)	945
Csp6I	GTAC	5 cut(s)	19, 424, 567, 1168, 1263
CviAII	CATG	5 cut(s)	416, 503, 778, 963, 1145
CviQI	GTAC	5 cut(s)	19, 424, 567, 1168, 1263
DdeI	CTNAG	5 cut(s)	97, 206, 480, 798, 839
DpnI	GATC	4 cut(s)	322, 355, 639, 1260
DpnII	GATC	4 cut(s)	320, 353, 637, 1258
DriI	GACNNNNNGTC	1 cut(s)	1234
EaeI	YGGCCR	3 cut(s)	818, 1105, 1288
Eam1105I	GACNNNNNGTC	1 cut(s)	1234
Eco105I	TACGTA	1 cut(s)	1266
Eco130I	CCWWGG	4 cut(s)	184, 194, 815, 1069
Eco32I	GATATC	1 cut(s)	1206
EcoRII	CCWGG	3 cut(s)	526, 609, 643
EcoRV	GATATC	1 cut(s)	1206
EcoT14I	CCWWGG	4 cut(s)	184, 194, 815, 1069
ErhI	CCWWGG	4 cut(s)	184, 194, 815, 1069
FaeI	CATG	5 cut(s)	419, 506, 781, 966, 1148
FaqI	GGGAC	2 cut(s)	702, 828
FatI	CATG	5 cut(s)	415, 502, 777, 962, 1144
Fnu4HI	GCNGC	3 cut(s)	94, 141, 156
FokI	GGATG	7 cut(s)	77, 167, 311, 510, 896, 954, 1037
Fsp4HI	GCNGC	3 cut(s)	94, 141, 156
FspBI	CTAG	5 cut(s)	216, 237, 351, 593, 1280
GluI	GCNGC	3 cut(s)	94, 141, 156
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	3 cut(s)	300, 621, 666
HaeIII	GGCC	4 cut(s)	643, 820, 1107, 1290
HapII	CCGG	4 cut(s)	229, 881, 1108, 1297
HgaI	GACGC	1 cut(s)	945
Hin1II	CATG	5 cut(s)	419, 506, 781, 966, 1148
HinfI	GANTC	7 cut(s)	101, 556, 606, 826, 841, 1235, 1316
HpaII	CCGG	4 cut(s)	229, 881, 1108, 1297
HphI	GGTGA	1 cut(s)	973
Hpy166II	GTNNAC	4 cut(s)	424, 733, 854, 898
Hpy188III	TCNNGA	7 cut(s)	279, 635, 845, 881, 971, 1226, 1280
Hpy8I	GTNNAC	4 cut(s)	424, 733, 854, 898
HpyAV	CCTTC	4 cut(s)	278, 289, 1054, 1168
HpyCH4III	ACNGT	2 cut(s)	716, 919
HpyCH4IV	ACGT	4 cut(s)	21, 466, 671, 1265
HpyCH4V	TGCA	3 cut(s)	471, 575, 627
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 799, 1130
HpyF3I	CTNAG	5 cut(s)	97, 206, 480, 798, 839
HpySE526I	ACGT	4 cut(s)	21, 466, 671, 1265
Hsp92II	CATG	5 cut(s)	419, 506, 781, 966, 1148
Kpn2I	TCCGGA	1 cut(s)	880
Kzo9I	GATC	4 cut(s)	320, 353, 637, 1258
Lsp1109I	GCAGC	2 cut(s)	142, 152
LweI	GCATC	2 cut(s)	640, 976
MaeI	CTAG	5 cut(s)	216, 237, 351, 593, 1280
MaeII	ACGT	4 cut(s)	21, 466, 671, 1265
MaeIII	GTNAC	3 cut(s)	389, 432, 1236
MalI	GATC	4 cut(s)	322, 355, 639, 1260
MboI	GATC	4 cut(s)	320, 353, 637, 1258
MboII	GAAGA	6 cut(s)	38, 56, 354, 365, 450, 1268
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	939
MlsI	TGGCCA	1 cut(s)	820
MluCI	AATT	5 cut(s)	256, 274, 785, 1185, 1300
MluNI	TGGCCA	1 cut(s)	820
MlyI	GAGTC	3 cut(s)	550, 850, 1244
MmeI	TCCRAC	2 cut(s)	850, 995
MnlI	CCTC	5 cut(s)	475, 535, 596, 754, 1322
Mox20I	TGGCCA	1 cut(s)	820
MroI	TCCGGA	1 cut(s)	880
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	820
MslI	CAYNNNNRTG	2 cut(s)	972, 1149
Msp20I	TGGCCA	1 cut(s)	820
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	4 cut(s)	229, 881, 1108, 1297
MspR9I	CCNGG	3 cut(s)	528, 611, 645
MvaI	CCWGG	3 cut(s)	528, 611, 645
MwoI	GCNNNNNNNGC	3 cut(s)	161, 799, 1130
NdeII	GATC	4 cut(s)	320, 353, 637, 1258
NlaIII	CATG	5 cut(s)	419, 506, 781, 966, 1148
NlaIV	GGNNCC	2 cut(s)	510, 998
NmuCI	GTSAC	2 cut(s)	432, 1236
NspI	RCATGY	1 cut(s)	506
NspV	TTCGAA	1 cut(s)	1030
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 1087
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	4 cut(s)	101, 606, 826, 1316
Pfl23II	CGTACG	1 cut(s)	1262
PfoI	TCCNGGA	1 cut(s)	526
PkrI	GCNGC	3 cut(s)	95, 142, 157
PleI	GAGTC	3 cut(s)	550, 849, 1243
PpsI	GAGTC	3 cut(s)	550, 849, 1243
Ppu21I	YACGTR	2 cut(s)	22, 1266
Psp6I	CCWGG	3 cut(s)	526, 609, 643
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	3 cut(s)	526, 609, 643
PspLI	CGTACG	1 cut(s)	1262
PspN4I	GGNNCC	2 cut(s)	510, 998
PstNI	CAGNNNCTG	2 cut(s)	104, 1052
PsuI	RGATCY	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	5 cut(s)	20, 425, 568, 1169, 1264
RsaNI	GTAC	5 cut(s)	19, 424, 567, 1168, 1263
RseI	CAYNNNNRTG	2 cut(s)	972, 1149
SatI	GCNGC	3 cut(s)	94, 141, 156
Sau3AI	GATC	4 cut(s)	320, 353, 637, 1258
ScaI	AGTACT	1 cut(s)	568
SchI	GAGTC	3 cut(s)	550, 850, 1244
ScrFI	CCNGG	3 cut(s)	528, 611, 645
SduI	GDGCHC	1 cut(s)	939
SfaNI	GCATC	2 cut(s)	640, 976
SfuI	TTCGAA	1 cut(s)	1030
SmiMI	CAYNNNNRTG	2 cut(s)	972, 1149
SmlI	CTYRAG	2 cut(s)	159, 558
SmoI	CTYRAG	2 cut(s)	159, 558
SnaBI	TACGTA	1 cut(s)	1266
Sse9I	AATT	5 cut(s)	256, 274, 785, 1185, 1300
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	5 cut(s)	216, 237, 351, 593, 1280
StyD4I	CCNGG	3 cut(s)	526, 609, 643
StyI	CCWWGG	4 cut(s)	184, 194, 815, 1069
TaaI	ACNGT	2 cut(s)	716, 919
TaiI	ACGT	4 cut(s)	24, 469, 674, 1268
TaqI	TCGA	2 cut(s)	1030, 1314
TaqII	GACCGA	1 cut(s)	1071
TasI	AATT	5 cut(s)	256, 274, 785, 1185, 1300
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	4 cut(s)	101, 606, 826, 1316
TscAI	CASTG	3 cut(s)	363, 727, 828
TseFI	GTSAC	2 cut(s)	432, 1236
TseI	GCWGC	2 cut(s)	140, 155
Tsp45I	GTSAC	2 cut(s)	432, 1236
TspDTI	ATGAA	8 cut(s)	45, 51, 129, 276, 365, 440, 450, 1133
TspGWI	ACGGA	1 cut(s)	797
TspRI	CASTG	3 cut(s)	363, 727, 828
XapI	RAATTY	1 cut(s)	785
XbaI	TCTAGA	1 cut(s)	1279
XceI	RCATGY	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	5 cut(s)	216, 237, 351, 593, 1280
ZrmI	AGTACT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.