MD03G1042700.v1.1

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
3348172 .. 3352508
4337 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1042700.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGTCCCATTACGCTGGTTATGTGGAGGATGAATACGAAATGGAAGATGTAGATGATGATATGGATGACGAGTTTCACAGTAGAGAAATGGGCGGCTCAGATTCCGATGTTGATGAATATGACTACTTGAATAGTAAAGTAGCTGATACAACTGCTGCTCAAGCAAGAAAAGGAAAAGACATCCAAGGTATTCCTTGGGATAGACTTAGCATTACTAGAGAGAAATACCGACAGACTAGGTTAGAACAATACAAGAATTATGAGAATGTCCCTAATTCTGGGGAAGGATCAGGGAAGGATTGCAAAGATACAAAGAAAGGATCTGTATATTATGAGTTCAGACGAAATGCTAGATCAGTGAAATCAACCATTCTTCATTTTCAGTTGCGTAACTTGGTCTGGGCTACTTCCAAGCATGACATCTATCTGATGTCACATTTTTCTGTCGTTCATTGGTCTTCCTTAAGTTGCACAAAGTCTGAGGTTCTCAACGTTTCTGGACATGTGACACCATCGGAGAAACATCCTGGAAGTCTCTTGGAGGGGTTTACACAGACTCAAGTTAGTACTCTTGCTGTAAAAGATAAGTTGCTGGTTGCTGGAGGATTCCAGGGTGAACTTATTTGCAAGCATCTTGATCGTCCAGGAGTTAGCTTTTGCTCGAGGACAACTTATGACGATAATGCCATAACAAATGCTGTTGAGATTTATGACAGTCCCAGTGGGGCAGTTCACTTTACAGCCTCTAATAATGACTGTGGAGTCAGAGACTTTGACATGGAGAAATTTCAGCTTACTAAGCATTTCCGGTATCCTTGGCCTGTGAATCATACTTCTTTGAGTCCCGATGGTAAACTTCTTGTGATTGTTGGAGACAATCCAGAAGGGATTTTGGTAAACTCTCAAACTGGAAAGACGGTGATGTCTTTAAATGGGCACTTGGATTTCTCCTTTGCATCAGCATGGCATCCCGATGGTATGACCTTTGCTACTGGGAACCAGGACAAAACCTGCCGGATTTGGGATGTTCGAAACCTTTCCAAGTCAGTTGCTGTTTTGAAGGGGAACCTTGGAGCTATTCGGTCAATCCGGTATACTTCTGATGGTCAGTATATGATGATGGCAGAGCCAGCAGACTTTGTGCATGTCTATGATGTGAAAAGTGGGTATGAGAAGGAACAGGAAATTGATTTCTTTGGCGAGATATCTGGCATATCATTCAGTCCGGACACAGAGTCACTTTTTATTGGAGTGTGGGATCGTACATACGGTAGTCTTCTTGAGTATGGCCGGAGCCGGAACTACTCTTACCTTGACTCTCTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

443

Amino Acids

49.85

Weight (kDa)

5.28

Isoelectric Point (pI)

28.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 192 - 389 4.1e-16 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 239 - 330 5.6e-07 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 239 - 422 6.3e-16 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 240 - 392 1.7e-12 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 240 - 348 2e-06 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 246 - 373 8.9e-06 WDR36/Utp21 second beta-propeller domain
WD40_Gbeta PF25391 249 - 373 7.2e-06 G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st PF25173 274 - 421 1.9e-11 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 275 - 414 3.6e-08 CDC20/Fizzy WD40 domain
WDR55 PF24796 277 - 389 4.3e-07 WDR55
WD40_Gbeta PF25391 282 - 419 5.4e-06 G protein beta WD-40 repeat protein
WD40 PF00400 304 - 342 1.2e-06 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 321 - 421 1.3e-13 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 761, 922
Acc36I ACCTGC 1 cut(s) 1019
AccI GTMKAC 1 cut(s) 1094
AccIII TCCGGA 1 cut(s) 1225
AciI CCGC 1 cut(s) 93
AclI AACGTT 1 cut(s) 492
AclWI GGATC 3 cut(s) 295, 328, 1266
AcoI YGGCCR 1 cut(s) 1288
AcsI RAATTY 1 cut(s) 785
AfaI GTAC 2 cut(s) 568, 1264
AfiI CCNNNNNNNGG 2 cut(s) 278, 1021
AflII CTTAAG 1 cut(s) 463
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 2 cut(s) 130, 1060
AhdI GACNNNNNGTC 1 cut(s) 1234
AjnI CCWGG 4 cut(s) 526, 609, 643, 999
AluBI AGCT 4 cut(s) 143, 654, 793, 1076
AluI AGCT 4 cut(s) 143, 654, 793, 1076
Alw26I GTCTC 3 cut(s) 539, 762, 867
AlwI GGATC 3 cut(s) 295, 328, 1266
AlwNI CAGNNNCTG 1 cut(s) 1052
Ama87I CYCGRG 1 cut(s) 661
Aor13HI TCCGGA 1 cut(s) 1225
AoxI GGCC 2 cut(s) 818, 1288
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 785
Asp700I GAANNNNTTC 1 cut(s) 1036
AsuHPI GGTGA 2 cut(s) 626, 931
AsuII TTCGAA 1 cut(s) 1030
AvaI CYCGRG 1 cut(s) 661
BaeGI GKGCMC 1 cut(s) 939
BbsI GAAGAC 2 cut(s) 450, 1268
BbvI GCAGC 1 cut(s) 142
BccI CCATC 5 cut(s) 520, 842, 968, 1097, 1114
BcgI CGANNNNNNTGC 2 cut(s) 620, 654
BciT130I CCWGG 4 cut(s) 528, 611, 645, 1001
BciVI GTATCC 1 cut(s) 822
BcoDI GTCTC 3 cut(s) 539, 762, 867
BfaI CTAG 3 cut(s) 216, 237, 351
BfrI CTTAAG 1 cut(s) 463
BfuAI ACCTGC 1 cut(s) 1019
BfuI GTATCC 1 cut(s) 822
BisI GCNGC 2 cut(s) 94, 156
BlsI GCNGC 2 cut(s) 95, 157
BmcAI AGTACT 1 cut(s) 568
Bme1390I CCNGG 4 cut(s) 528, 611, 645, 1001
BmeRI GACNNNNNGTC 1 cut(s) 1234
BmeT110I CYCGRG 1 cut(s) 661
BmiI GGNNCC 3 cut(s) 998, 1067, 1295
BmrFI CCNGG 4 cut(s) 528, 611, 645, 1001
BmrI ACTGGG 2 cut(s) 714, 1002
BmsI GCATC 3 cut(s) 640, 965, 976
BmuI ACTGGG 2 cut(s) 714, 1002
BpiI GAAGAC 2 cut(s) 450, 1268
BpmI CTGGAG 1 cut(s) 621
Bpu14I TTCGAA 1 cut(s) 1030
BpuEI CTTGAG 3 cut(s) 144, 543, 1301
BsaJI CCNNGG 5 cut(s) 184, 194, 610, 815, 1069
BsaWI WCCGGW 3 cut(s) 807, 1089, 1225
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 1021
Bse1I ACTGG 3 cut(s) 720, 913, 997
BseAI TCCGGA 1 cut(s) 1225
BseBI CCWGG 4 cut(s) 528, 611, 645, 1001
BseDI CCNNGG 5 cut(s) 184, 194, 610, 815, 1069
BseGI GGATG 6 cut(s) 34, 70, 180, 523, 967, 1030
BseLI CCNNNNNNNGG 2 cut(s) 278, 1021
BseMII CTCAG 2 cut(s) 111, 471
BseNI ACTGG 3 cut(s) 720, 913, 997
BseSI GKGCMC 1 cut(s) 939
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 2 cut(s) 820, 1290
BsiHKCI CYCGRG 1 cut(s) 661
BsiSI CCGG 6 cut(s) 808, 1015, 1090, 1226, 1291, 1297
BslFI GGGAC 3 cut(s) 254, 702, 828
BslI CCNNNNNNNGG 2 cut(s) 278, 1021
BsmAI GTCTC 3 cut(s) 539, 762, 867
BsmFI GGGAC 3 cut(s) 254, 702, 828
BsnI GGCC 2 cut(s) 820, 1290
BsoBI CYCGRG 1 cut(s) 661
Bsp119I TTCGAA 1 cut(s) 1030
Bsp1286I GDGCHC 1 cut(s) 939
Bsp13I TCCGGA 1 cut(s) 1225
Bsp143I GATC 5 cut(s) 287, 320, 353, 637, 1258
BspACI CCGC 1 cut(s) 93
BspANI GGCC 2 cut(s) 820, 1290
BspCNI CTCAG 2 cut(s) 110, 472
BspEI TCCGGA 1 cut(s) 1225
BspLI GGNNCC 3 cut(s) 998, 1067, 1295
BspMI ACCTGC 1 cut(s) 1019
BspPI GGATC 3 cut(s) 295, 328, 1266
BspT104I TTCGAA 1 cut(s) 1030
BspTI CTTAAG 1 cut(s) 463
BsrI ACTGG 3 cut(s) 720, 913, 997
BssECI CCNNGG 5 cut(s) 184, 194, 610, 815, 1069
BssMI GATC 5 cut(s) 287, 320, 353, 637, 1258
BssNAI GTATAC 1 cut(s) 1095
BssT1I CCWWGG 4 cut(s) 184, 194, 815, 1069
Bst1107I GTATAC 1 cut(s) 1095
Bst2UI CCWGG 4 cut(s) 528, 611, 645, 1001
Bst4CI ACNGT 5 cut(s) 80, 716, 758, 919, 1271
BstAFI CTTAAG 1 cut(s) 463
BstBI TTCGAA 1 cut(s) 1030
BstC8I GCNNGC 2 cut(s) 629, 1131
BstDEI CTNAG 4 cut(s) 97, 206, 480, 798
BstF5I GGATG 6 cut(s) 34, 70, 180, 523, 967, 1030
BstKTI GATC 5 cut(s) 290, 323, 356, 640, 1261
BstMAI GTCTC 3 cut(s) 539, 762, 867
BstMBI GATC 5 cut(s) 287, 320, 353, 637, 1258
BstMWI GCNNNNNNNGC 3 cut(s) 161, 799, 1130
BstNI CCWGG 4 cut(s) 528, 611, 645, 1001
BstNSI RCATGY 2 cut(s) 506, 1148
BstSCI CCNGG 4 cut(s) 526, 609, 643, 999
BstSLI GKGCMC 1 cut(s) 939
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 2 cut(s) 450, 1268
BstX2I RGATCY 1 cut(s) 320
BstXI CCANNNNNNTGG 1 cut(s) 14
BstYI RGATCY 1 cut(s) 320
BstZ17I GTATAC 1 cut(s) 1095
BsuI GTATCC 1 cut(s) 822
BsuRI GGCC 2 cut(s) 820, 1290
BtsCI GGATG 6 cut(s) 34, 70, 180, 523, 967, 1030
BtsIMutI CAGTG 2 cut(s) 363, 727
BveI ACCTGC 1 cut(s) 1019
Cac8I GCNNGC 2 cut(s) 629, 1131
CaiI CAGNNNCTG 1 cut(s) 1052
Csp6I GTAC 2 cut(s) 567, 1263
CviAII CATG 5 cut(s) 416, 503, 778, 963, 1145
CviQI GTAC 2 cut(s) 567, 1263
DdeI CTNAG 4 cut(s) 97, 206, 480, 798
DpnI GATC 5 cut(s) 289, 322, 355, 639, 1260
DpnII GATC 5 cut(s) 287, 320, 353, 637, 1258
DraI TTTAAA 1 cut(s) 930
DrdI GACNNNNNNGTC 2 cut(s) 761, 922
DriI GACNNNNNGTC 1 cut(s) 1234
DseDI GACNNNNNNGTC 2 cut(s) 761, 922
EaeI YGGCCR 1 cut(s) 1288
Eam1105I GACNNNNNGTC 1 cut(s) 1234
Eco130I CCWWGG 4 cut(s) 184, 194, 815, 1069
Eco32I GATATC 1 cut(s) 1206
Eco88I CYCGRG 1 cut(s) 661
EcoRII CCWGG 4 cut(s) 526, 609, 643, 999
EcoRV GATATC 1 cut(s) 1206
EcoT14I CCWWGG 4 cut(s) 184, 194, 815, 1069
ErhI CCWWGG 4 cut(s) 184, 194, 815, 1069
FaeI CATG 5 cut(s) 419, 506, 781, 966, 1148
FaqI GGGAC 3 cut(s) 254, 702, 828
FatI CATG 5 cut(s) 415, 502, 777, 962, 1144
FblI GTMKAC 1 cut(s) 1094
Fnu4HI GCNGC 2 cut(s) 94, 156
FokI GGATG 6 cut(s) 41, 77, 167, 510, 954, 1037
Fsp4HI GCNGC 2 cut(s) 94, 156
FspBI CTAG 3 cut(s) 216, 237, 351
GluI GCNGC 2 cut(s) 94, 156
GsuI CTGGAG 1 cut(s) 621
HaeIII GGCC 2 cut(s) 820, 1290
HapII CCGG 6 cut(s) 808, 1015, 1090, 1226, 1291, 1297
Hin1II CATG 5 cut(s) 419, 506, 781, 966, 1148
HinfI GANTC 8 cut(s) 101, 556, 606, 762, 826, 841, 1235, 1316
HpaII CCGG 6 cut(s) 808, 1015, 1090, 1226, 1291, 1297
HphI GGTGA 2 cut(s) 626, 931
Hpy166II GTNNAC 6 cut(s) 549, 617, 733, 854, 898, 1095
Hpy188I TCNGA 8 cut(s) 100, 106, 341, 429, 481, 517, 767, 1102
Hpy188III TCNNGA 7 cut(s) 498, 635, 845, 881, 971, 1226, 1280
Hpy8I GTNNAC 6 cut(s) 549, 617, 733, 854, 898, 1095
HpyAV CCTTC 5 cut(s) 278, 289, 878, 1054, 1168
HpyCH4III ACNGT 5 cut(s) 80, 716, 758, 919, 1271
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 5 cut(s) 303, 471, 627, 956, 1144
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 799, 1130
HpyF3I CTNAG 4 cut(s) 97, 206, 480, 798
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 5 cut(s) 419, 506, 781, 966, 1148
Kpn2I TCCGGA 1 cut(s) 1225
Kzo9I GATC 5 cut(s) 287, 320, 353, 637, 1258
LmnI GCTCC 2 cut(s) 1073, 1293
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 3 cut(s) 640, 965, 976
MaeI CTAG 3 cut(s) 216, 237, 351
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 4 cut(s) 389, 432, 505, 1236
MalI GATC 5 cut(s) 289, 322, 355, 639, 1260
MboI GATC 5 cut(s) 287, 320, 353, 637, 1258
MboII GAAGA 4 cut(s) 56, 365, 450, 1268
MflI RGATCY 1 cut(s) 320
MhlI GDGCHC 1 cut(s) 939
MluCI AATT 4 cut(s) 256, 274, 785, 1185
MlyI GAGTC 5 cut(s) 550, 771, 850, 1244, 1310
MmeI TCCRAC 1 cut(s) 850
MnlI CCTC 6 cut(s) 19, 475, 535, 596, 657, 754
MroI TCCGGA 1 cut(s) 1225
MroXI GAANNNNTTC 1 cut(s) 1036
MseI TTAA 2 cut(s) 464, 929
MslI CAYNNNNRTG 3 cut(s) 961, 972, 1149
MspCI CTTAAG 1 cut(s) 463
MspI CCGG 6 cut(s) 808, 1015, 1090, 1226, 1291, 1297
MspR9I CCNGG 4 cut(s) 528, 611, 645, 1001
MvaI CCWGG 4 cut(s) 528, 611, 645, 1001
MwoI GCNNNNNNNGC 3 cut(s) 161, 799, 1130
NdeII GATC 5 cut(s) 287, 320, 353, 637, 1258
NlaIII CATG 5 cut(s) 419, 506, 781, 966, 1148
NlaIV GGNNCC 3 cut(s) 998, 1067, 1295
NmuCI GTSAC 3 cut(s) 432, 505, 1236
NspI RCATGY 2 cut(s) 506, 1148
NspV TTCGAA 1 cut(s) 1030
PaeR7I CTCGAG 1 cut(s) 661
PciI ACATGT 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 1036
PfeI GAWTC 3 cut(s) 101, 606, 826
PfoI TCCNGGA 2 cut(s) 526, 643
PkrI GCNGC 2 cut(s) 95, 157
PleI GAGTC 5 cut(s) 550, 770, 849, 1243, 1310
PpsI GAGTC 5 cut(s) 550, 770, 849, 1243, 1310
PscI ACATGT 1 cut(s) 502
Psp1406I AACGTT 1 cut(s) 492
Psp6I CCWGG 4 cut(s) 526, 609, 643, 999
PspGI CCWGG 4 cut(s) 526, 609, 643, 999
PspN4I GGNNCC 3 cut(s) 998, 1067, 1295
PspXI VCTCGAGB 1 cut(s) 661
PsrI GAACNNNNNNTAC 2 cut(s) 1292, 1324
PstNI CAGNNNCTG 1 cut(s) 1052
PsuI RGATCY 1 cut(s) 320
RsaI GTAC 2 cut(s) 568, 1264
RsaNI GTAC 2 cut(s) 567, 1263
RseI CAYNNNNRTG 3 cut(s) 961, 972, 1149
SaqAI TTAA 2 cut(s) 464, 929
SatI GCNGC 2 cut(s) 94, 156
Sau3AI GATC 5 cut(s) 287, 320, 353, 637, 1258
ScaI AGTACT 1 cut(s) 568
SchI GAGTC 5 cut(s) 550, 771, 850, 1244, 1310
ScrFI CCNGG 4 cut(s) 528, 611, 645, 1001
SduI GDGCHC 1 cut(s) 939
SfaNI GCATC 3 cut(s) 640, 965, 976
Sfr274I CTCGAG 1 cut(s) 661
SfuI TTCGAA 1 cut(s) 1030
SlaI CTCGAG 1 cut(s) 661
SmiMI CAYNNNNRTG 3 cut(s) 961, 972, 1149
SmlI CTYRAG 5 cut(s) 159, 463, 558, 661, 1280
SmoI CTYRAG 5 cut(s) 159, 463, 558, 661, 1280
Sse9I AATT 4 cut(s) 256, 274, 785, 1185
SsiI CCGC 1 cut(s) 93
SspMI CTAG 3 cut(s) 216, 237, 351
StyD4I CCNGG 4 cut(s) 526, 609, 643, 999
StyI CCWWGG 4 cut(s) 184, 194, 815, 1069
TaaI ACNGT 5 cut(s) 80, 716, 758, 919, 1271
TaiI ACGT 1 cut(s) 495
TaqI TCGA 2 cut(s) 662, 1030
TaqII GACCGA 1 cut(s) 1071
TasI AATT 4 cut(s) 256, 274, 785, 1185
TatI WGTACW 1 cut(s) 566
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 3 cut(s) 101, 606, 826
Tru1I TTAA 2 cut(s) 464, 929
Tru9I TTAA 2 cut(s) 464, 929
TscAI CASTG 2 cut(s) 363, 727
TseFI GTSAC 3 cut(s) 432, 505, 1236
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 3 cut(s) 432, 505, 1236
TspDTI ATGAA 4 cut(s) 45, 129, 365, 440
TspRI CASTG 2 cut(s) 363, 727
Vha464I CTTAAG 1 cut(s) 463
XapI RAATTY 1 cut(s) 785
XceI RCATGY 2 cut(s) 506, 1148
XhoI CTCGAG 1 cut(s) 661
XmiI GTMKAC 1 cut(s) 1094
XmnI GAANNNNTTC 1 cut(s) 1036
XspI CTAG 3 cut(s) 216, 237, 351
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.