Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001622

Physical Location & Seq

Genomic Coordinates Reverse (-)

80666877 .. 80667644

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTTGGTCGACTCTCAAACTGGCAAGGTGACGGTGACGCCTTTATGTGGACACTTGGATTTCTCGTTTGCATCAGCGTGGCATCCTGATGGTGTCACCTTTGCTACTGGGAAGCAGGACAAAACCTGTCGGGTTTGGGATGTTCGAAACCTATCCAAGTCAGTTGCTGTTTTAAAGGGAAACCTTGGAGCTATTCGGTCAATCCGTTATACTTCTGATGGTCAGTATATGATGATGGCAGAGCCAGCAGACTTTGTGCATGTCTATGATGTGAAAAGTGGGTATGAGAAGGAGCAGGAAATCTATTTCTTTGGTGAGATATCTGGCATATCATTCAGTCCAGACACAGAGTCGCTTTTCATTGGAGTGTGGGATCGTACATATGGTGGTCTTCTCGAGTATGGAAGACAGAAGTGTGTTGCTAAAGGGATCCTGATATTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2415 WD40

Protein Analysis

148

Amino Acids

16.51

Weight (kDa)

5.88

Isoelectric Point (pI)

23.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	4 - 140	4e-11	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	4 - 126	6.3e-09	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	13 - 126	2.9e-15	THOC3 beta-propeller domain
WD40_Prp19	PF24814	24 - 93	7.7e-12	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	24 - 100	5.7e-08	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_Aladin	PF25460	26 - 122	1e-05	Aladin seven-bladed propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55680 AT3G13340 AT3G13340 AT3G13340
fragaria_vesca	FvH4_3g41630 FvH4_3g41640 FvH4_3g41650
malus_domestica	MD03G1042700.v1.1 MD03G1216600.v1.1 MD05G1255200.v1.1 MD11G1044000.v1.1 MD11G1045800.v1.1
prunus_persica	Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1
pyrus_communis	pycom03g03290 pycom11g03710
rosa_chinensis	RchiOBHm_Chr5g0074671 RchiOBHm_Chr5g0074681 RchiOBHm_Chr5g0074701 RchiOBHm_Chr5g0074741
rosa_laevigata	RLG00000036497
rosa_multiflora	Rmu_sc0000909.1_g000023 Rmu_sc0000909.1_g000027 Rmu_sc0008028.1_g000001 Rmu_sc0019386.1_g000002 Rmu_sc0019386.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006840 Rroxscaffold_1G00006860 Rroxscaffold_1G00006870
rosa_rugosa	Rorug05G0433500 Rorug05G0433600
rosa_samantha	Rh5AG490700 Rh5AG490800 Rh5AG491100 Rh5BG511800 Rh5BG512000 Rh5BG512300 Rh5BG512400 Rh5BG512500 Rh5CG535600 Rh5CG535700 Rh5CG536000 Rh5CG536100 Rh5DG524200 Rh5DG524500
rosa_wichuraiana	Rw5G045450 Rw5G045460 Rw5G045490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	9
AclWI	GGATC	3 cut(s)	381, 424, 437
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	1 cut(s)	47
AhdI	GACNNNNNGTC	1 cut(s)	349
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
AlwI	GGATC	3 cut(s)	381, 424, 437
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	395
AsuHPI	GGTGA	4 cut(s)	40, 46, 88, 326
AsuII	TTCGAA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	395
BamHI	GGATCC	1 cut(s)	429
BbsI	GAAGAC	2 cut(s)	383, 412
BccI	CCATC	3 cut(s)	83, 212, 229
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	431
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	2 cut(s)	80, 91
BmuI	ACTGGG	1 cut(s)	117
BpiI	GAAGAC	2 cut(s)	383, 412
Bpu14I	TTCGAA	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	25, 112
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	2 cut(s)	82, 145
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseNI	ACTGG	2 cut(s)	25, 112
BsiHKCI	CYCGRG	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	395
Bsp119I	TTCGAA	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	373, 429
BspLI	GGNNCC	1 cut(s)	431
BspPI	GGATC	3 cut(s)	381, 424, 437
BspT104I	TTCGAA	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	25, 112
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	373, 429
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	38
BstBI	TTCGAA	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	82, 145
BstKTI	GATC	2 cut(s)	376, 432
BstMBI	GATC	2 cut(s)	373, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	263
BstV2I	GAAGAC	2 cut(s)	383, 412
BstX2I	RGATCY	1 cut(s)	429
BstYI	RGATCY	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	82, 145
Cac8I	GCNNGC	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	167
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	2 cut(s)	191, 244
CviKI_1	RGCY	2 cut(s)	191, 244
CviQI	GTAC	1 cut(s)	378
DpnI	GATC	2 cut(s)	375, 431
DpnII	GATC	2 cut(s)	373, 429
DraI	TTTAAA	1 cut(s)	174
DriI	GACNNNNNGTC	1 cut(s)	349
Eam1105I	GACNNNNNGTC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	184
Eco32I	GATATC	1 cut(s)	321
Eco88I	CYCGRG	1 cut(s)	395
EcoRV	GATATC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	1 cut(s)	263
FatI	CATG	1 cut(s)	259
FauNDI	CATATG	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	9
FokI	GGATG	2 cut(s)	69, 152
HgaI	GACGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	11, 350
HphI	GGTGA	4 cut(s)	40, 46, 88, 326
Hpy166II	GTNNAC	2 cut(s)	10, 50
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	4 cut(s)	86, 341, 395, 433
Hpy8I	GTNNAC	2 cut(s)	10, 50
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	2 cut(s)	71, 259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	373, 429
LmnI	GCTCC	2 cut(s)	188, 292
LpnPI	CCDG	9 cut(s)	6, 93, 99, 101, 139, 258, 281, 309, 354
LweI	GCATC	2 cut(s)	80, 91
MaeIII	GTNAC	3 cut(s)	28, 34, 94
MalI	GATC	2 cut(s)	375, 431
MboI	GATC	2 cut(s)	373, 429
MboII	GAAGA	2 cut(s)	383, 417
MflI	RGATCY	1 cut(s)	429
MlyI	GAGTC	2 cut(s)	5, 359
MseI	TTAA	2 cut(s)	173, 441
MslI	CAYNNNNRTG	4 cut(s)	76, 87, 264, 365
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	2 cut(s)	373, 429
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	3 cut(s)	28, 34, 94
NspI	RCATGY	1 cut(s)	263
NspV	TTCGAA	1 cut(s)	145
PaeR7I	CTCGAG	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PleI	GAGTC	2 cut(s)	5, 358
PpsI	GAGTC	2 cut(s)	5, 358
PspN4I	GGNNCC	1 cut(s)	431
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	429
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	4 cut(s)	76, 87, 264, 365
SalI	GTCGAC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	173, 441
Sau3AI	GATC	2 cut(s)	373, 429
SchI	GAGTC	2 cut(s)	5, 359
SetI	ASST	6 cut(s)	30, 101, 128, 153, 186, 193
SfaNI	GCATC	2 cut(s)	80, 91
Sfr274I	CTCGAG	1 cut(s)	395
SfuI	TTCGAA	1 cut(s)	145
SlaI	CTCGAG	1 cut(s)	395
SmiMI	CAYNNNNRTG	4 cut(s)	76, 87, 264, 365
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	3 cut(s)	9, 145, 396
TaqII	GACCGA	1 cut(s)	186
Tru1I	TTAA	2 cut(s)	173, 441
Tru9I	TTAA	2 cut(s)	173, 441
TseFI	GTSAC	3 cut(s)	28, 34, 94
Tsp45I	GTSAC	3 cut(s)	28, 34, 94
TspDTI	ATGAA	1 cut(s)	349
TspGWI	ACGGA	1 cut(s)	194
XceI	RCATGY	1 cut(s)	263
XhoI	CTCGAG	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.