Rh5CG535600

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001622
Physical Location & Seq
Reverse (-)
75025878 .. 75027919
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG535600.1

Sequence Viewer

Length: 318 bp
ATGTCCCACTACGCTGGTTACGTGGAAGATGAATATGAAATGGAAGATGTAGATGATGATATGGATGACGAATTTCGTGGAAGAGACCTGGCTGGCTCAGAGTCTGATGTTGATGAATTTGAATATGCGAATAGTAAAGTAGCTGATACAACTGCTGCTCAAGCAAGAAGAGGAAAAGACATCCAAGGTATTCCTTGGGATAGACTTAGCATTACTAGAGAAAAATACCGGCAAACTAGGTTAGAACAGTACAAGAATTATGAAAACATCCCTAATTCCGGAGAAGGGTCAGGGAAGTTACTTTATTATGTGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2415 WD40

Protein Analysis

105

Amino Acids

12.27

Weight (kDa)

4.36

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 278
AcsI RAATTY 2 cut(s) 71, 116
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 2 cut(s) 278, 285
AgsI TTSAA 1 cut(s) 122
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 104
Aor13HI TCCGGA 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 2 cut(s) 71, 116
BbvI GCAGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 2 cut(s) 216, 237
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 144
BsaAI YACGTR 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 184, 194
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 285
Bse118I RCCGGY 1 cut(s) 228
BseAI TCCGGA 1 cut(s) 278
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 184, 194
BseGI GGATG 3 cut(s) 70, 180, 267
BseLI CCNNNNNNNGG 2 cut(s) 278, 285
BseMII CTCAG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 142
BsiSI CCGG 2 cut(s) 229, 279
BslI CCNNNNNNNGG 2 cut(s) 278, 285
BsmAI GTCTC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 278
BspCNI CTCAG 1 cut(s) 110
BspEI TCCGGA 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 228
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 2 cut(s) 184, 194
BssT1I CCWWGG 2 cut(s) 184, 194
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 2 cut(s) 76, 163
BstBAI YACGTR 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 97, 206
BstF5I GGATG 3 cut(s) 70, 180, 267
BstMAI GTCTC 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 14
BtsCI GGATG 3 cut(s) 70, 180, 267
Cac8I GCNNGC 1 cut(s) 94
CaiI CAGNNNCTG 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 228
Csp6I GTAC 1 cut(s) 250
CviJI RGCY 3 cut(s) 92, 96, 143
CviKI_1 RGCY 3 cut(s) 92, 96, 143
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 97, 206
Eam1104I CTCTTC 2 cut(s) 76, 163
EarI CTCTTC 2 cut(s) 76, 163
Eco130I CCWWGG 2 cut(s) 184, 194
Eco31I GGTCTC 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 2 cut(s) 184, 194
ErhI CCWWGG 2 cut(s) 184, 194
FaiI YATR 5 cut(s) 36, 62, 126, 261, 309
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 3 cut(s) 77, 167, 254
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 2 cut(s) 216, 237
GluI GCNGC 1 cut(s) 156
HapII CCGG 2 cut(s) 229, 279
HinfI GANTC 1 cut(s) 101
HpaII CCGG 2 cut(s) 229, 279
Hpy188I TCNGA 2 cut(s) 100, 106
Hpy188III TCNNGA 1 cut(s) 279
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 97, 206
HpySE526I ACGT 1 cut(s) 21
Kpn2I TCCGGA 1 cut(s) 278
LpnPI CCDG 6 cut(s) 74, 78, 101, 242, 276, 292
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 2 cut(s) 216, 237
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 17, 297
MboII GAAGA 4 cut(s) 38, 56, 93, 180
MluCI AATT 4 cut(s) 71, 116, 256, 274
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 1 cut(s) 164
MroI TCCGGA 1 cut(s) 278
MspI CCGG 2 cut(s) 229, 279
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 161
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Ppu21I YACGTR 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SatI GCNGC 1 cut(s) 156
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 89
SetI ASST 5 cut(s) 24, 90, 145, 190, 242
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
Sse9I AATT 4 cut(s) 71, 116, 256, 274
SspMI CTAG 2 cut(s) 216, 237
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 2 cut(s) 184, 194
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 1 cut(s) 24
TasI AATT 4 cut(s) 71, 116, 256, 274
TatI WGTACW 1 cut(s) 249
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 4 cut(s) 45, 51, 129, 276
XapI RAATTY 2 cut(s) 71, 116
XspI CTAG 2 cut(s) 216, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.