Rh5DG524200

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001622
Physical Location & Seq
Reverse (-)
81250165 .. 81254969
4805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG524200.1

Sequence Viewer

Length: 858 bp
ATGTCCCACTACGCTGGTTACGTGGAAGATGAATATGAAATGGAAGATGTAGATGATGATATGGATGACGAATTTCGTGGAAGAGACCTGGCTGGCTCCGAGTCTGATGTTGATGAATTTGAATATGCGAATAGTAAAGTAGCTGATACAACTGCTGCTCAAGCAAGAAGAGGAAAAGACATCCAAGGTATTCCTTGGGATAGACTTAGCATTACTAGAGAGAAATACCGGCAAACTAGGTTAGAACAGTACAAGAATTATGAAAACATCCCTAATTCCGGAGAAGGGTCAGGGAAGGATTGCAACATTACAAAGAAGGGATCTGTATATTATGAGTTTAGACGTAATGCAAGATCAGTGAAATCAACTATTCTTCATTTTCAGTTGCGGAACTTGGTCTGGGCTACATCAAAGCATGATGTCTACCTTATGTCACATTTTTCTGTCATTCATTGGTCTTCATTGAATTGCAACAAGTCTGAGGTTCTAAATGTTTCAGGACATGTGGCACCATCAGAGAAACATCCTGGGAGTCTCTTGGAGGGATTTACGCAGACTCAAGTTAGTACTCTTGCAGTAAAAGATAAGTTGCTAGTTGCTGGAGGATTCCAGGGAGAACTTATTTGTAAGCATCTTGATCGGCCTGGAGTTAGCTTTTGTTCAAGGACAACTTACGATGATAATGCCATTACAAATGCTGTTGAGATTTATGATGGTCCCAGTGGTGCAGTTCACTTTACAGCATCAAATAATGATTGTGGAGTCCGAGACTTTGACATGGAGAAATTTCAGCTTTCTAAGCATTTCCGTTTTCCTTGGCCAGTGAATGTGAGCTTCCTGCATTCTGCATTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2415 WD40

Protein Analysis

285

Amino Acids

32.36

Weight (kDa)

5.56

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 508
AccI GTMKAC 1 cut(s) 423
AccIII TCCGGA 1 cut(s) 278
AciI CCGC 1 cut(s) 388
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 1 cut(s) 818
AcsI RAATTY 3 cut(s) 71, 116, 785
AfaI GTAC 2 cut(s) 251, 568
AfiI CCNNNNNNNGG 2 cut(s) 278, 285
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 3 cut(s) 122, 466, 663
AjnI CCWGG 4 cut(s) 87, 526, 609, 643
AluBI AGCT 4 cut(s) 143, 654, 793, 834
AluI AGCT 4 cut(s) 143, 654, 793, 834
Alw26I GTCTC 3 cut(s) 78, 539, 762
AlwI GGATC 1 cut(s) 328
Aor13HI TCCGGA 1 cut(s) 278
AoxI GGCC 2 cut(s) 641, 818
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 3 cut(s) 71, 116, 785
AspS9I GGNCC 1 cut(s) 716
AvaII GGWCC 1 cut(s) 716
BalI TGGCCA 1 cut(s) 820
BanI GGYRCC 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 450
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 520, 707
BcgI CGANNNNNNTGC 4 cut(s) 620, 654, 665, 699
BciT130I CCWGG 4 cut(s) 89, 528, 611, 645
BcoDI GTCTC 3 cut(s) 78, 539, 762
BfaI CTAG 3 cut(s) 216, 237, 593
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 1 cut(s) 568
Bme1390I CCNGG 4 cut(s) 89, 528, 611, 645
Bme18I GGWCC 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 716
BmiI GGNNCC 3 cut(s) 97, 510, 718
BmrFI CCNGG 4 cut(s) 89, 528, 611, 645
BmrI ACTGGG 1 cut(s) 714
BmsI GCATC 2 cut(s) 640, 752
BmuI ACTGGG 1 cut(s) 714
BpiI GAAGAC 1 cut(s) 450
BpmI CTGGAG 2 cut(s) 621, 666
BpuEI CTTGAG 2 cut(s) 144, 543
BsaAI YACGTR 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 5 cut(s) 184, 194, 527, 610, 815
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 285
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 2 cut(s) 720, 821
BseAI TCCGGA 1 cut(s) 278
BseBI CCWGG 4 cut(s) 89, 528, 611, 645
BseDI CCNNGG 5 cut(s) 184, 194, 527, 610, 815
BseGI GGATG 4 cut(s) 70, 180, 267, 523
BseLI CCNNNNNNNGG 2 cut(s) 278, 285
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 2 cut(s) 720, 821
BseXI GCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 747
BshFI GGCC 2 cut(s) 643, 820
BshNI GGYRCC 1 cut(s) 508
BsiSI CCGG 2 cut(s) 229, 279
BslFI GGGAC 1 cut(s) 702
BslI CCNNNNNNNGG 2 cut(s) 278, 285
BsmAI GTCTC 3 cut(s) 78, 539, 762
BsmFI GGGAC 1 cut(s) 702
BsmI GAATGC 2 cut(s) 841, 848
BsnI GGCC 2 cut(s) 643, 820
Bso31I GGTCTC 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 278
Bsp143I GATC 3 cut(s) 320, 353, 637
BspACI CCGC 1 cut(s) 388
BspANI GGCC 2 cut(s) 643, 820
BspCNI CTCAG 1 cut(s) 472
BspEI TCCGGA 1 cut(s) 278
BspLI GGNNCC 3 cut(s) 97, 510, 718
BspPI GGATC 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 508
BspTNI GGTCTC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 2 cut(s) 720, 821
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 5 cut(s) 184, 194, 527, 610, 815
BssMI GATC 3 cut(s) 320, 353, 637
BssT1I CCWWGG 3 cut(s) 184, 194, 815
Bst2UI CCWGG 4 cut(s) 89, 528, 611, 645
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 2 cut(s) 76, 163
BstBAI YACGTR 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 3 cut(s) 206, 480, 798
BstF5I GGATG 4 cut(s) 70, 180, 267, 523
BstKTI GATC 3 cut(s) 323, 356, 640
BstMAI GTCTC 3 cut(s) 78, 539, 762
BstMBI GATC 3 cut(s) 320, 353, 637
BstMWI GCNNNNNNNGC 2 cut(s) 161, 799
BstNI CCWGG 4 cut(s) 89, 528, 611, 645
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 4 cut(s) 87, 526, 609, 643
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 320
BstXI CCANNNNNNTGG 1 cut(s) 14
BstYI RGATCY 1 cut(s) 320
BsuRI GGCC 2 cut(s) 643, 820
BtsCI GGATG 4 cut(s) 70, 180, 267, 523
BtsIMutI CAGTG 3 cut(s) 363, 727, 828
Cac8I GCNNGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 716
Csp6I GTAC 2 cut(s) 250, 567
CviAII CATG 3 cut(s) 416, 503, 778
CviJI RGCY 9 cut(s) 92, 96, 143, 404, 643, 654, 793, 820, 834
CviKI_1 RGCY 9 cut(s) 92, 96, 143, 404, 643, 654, 793, 820, 834
CviQI GTAC 2 cut(s) 250, 567
DdeI CTNAG 3 cut(s) 206, 480, 798
DpnI GATC 3 cut(s) 322, 355, 639
DpnII GATC 3 cut(s) 320, 353, 637
EaeI YGGCCR 1 cut(s) 818
Eam1104I CTCTTC 2 cut(s) 76, 163
EarI CTCTTC 2 cut(s) 76, 163
Eco130I CCWWGG 3 cut(s) 184, 194, 815
Eco31I GGTCTC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 716
EcoRII CCWGG 4 cut(s) 87, 526, 609, 643
EcoT14I CCWWGG 3 cut(s) 184, 194, 815
ErhI CCWWGG 3 cut(s) 184, 194, 815
FaeI CATG 3 cut(s) 419, 506, 781
FalI AAGNNNNNCTT 2 cut(s) 655, 687
FaqI GGGAC 1 cut(s) 702
FatI CATG 3 cut(s) 415, 502, 777
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 4 cut(s) 77, 167, 254, 510
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 3 cut(s) 216, 237, 593
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 2 cut(s) 621, 666
HaeIII GGCC 2 cut(s) 643, 820
HapII CCGG 2 cut(s) 229, 279
Hin1II CATG 3 cut(s) 419, 506, 781
HinfI GANTC 5 cut(s) 101, 532, 556, 606, 762
HpaII CCGG 2 cut(s) 229, 279
Hpy166II GTNNAC 2 cut(s) 424, 733
Hpy188I TCNGA 5 cut(s) 100, 106, 481, 517, 767
Hpy188III TCNNGA 3 cut(s) 279, 498, 635
Hpy8I GTNNAC 2 cut(s) 424, 733
HpyAV CCTTC 3 cut(s) 278, 289, 310
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 2 cut(s) 21, 343
HpyCH4V TGCA 7 cut(s) 303, 350, 471, 575, 728, 841, 848
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 799
HpyF3I CTNAG 3 cut(s) 206, 480, 798
HpySE526I ACGT 2 cut(s) 21, 343
Hsp92II CATG 3 cut(s) 419, 506, 781
Kpn2I TCCGGA 1 cut(s) 278
Kzo9I GATC 3 cut(s) 320, 353, 637
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 2 cut(s) 640, 752
MaeI CTAG 3 cut(s) 216, 237, 593
MaeII ACGT 2 cut(s) 21, 343
MaeIII GTNAC 2 cut(s) 17, 432
MalI GATC 3 cut(s) 322, 355, 639
MboI GATC 3 cut(s) 320, 353, 637
MboII GAAGA 6 cut(s) 38, 56, 93, 180, 365, 450
MflI RGATCY 1 cut(s) 320
MlsI TGGCCA 1 cut(s) 820
MluCI AATT 6 cut(s) 71, 116, 256, 274, 466, 785
MluNI TGGCCA 1 cut(s) 820
MlyI GAGTC 4 cut(s) 110, 541, 550, 771
MnlI CCTC 4 cut(s) 164, 475, 535, 596
Mox20I TGGCCA 1 cut(s) 820
MroI TCCGGA 1 cut(s) 278
MscI TGGCCA 1 cut(s) 820
Msp20I TGGCCA 1 cut(s) 820
MspI CCGG 2 cut(s) 229, 279
MspR9I CCNGG 4 cut(s) 89, 528, 611, 645
Mva1269I GAATGC 2 cut(s) 841, 848
MvaI CCWGG 4 cut(s) 89, 528, 611, 645
MwoI GCNNNNNNNGC 2 cut(s) 161, 799
NdeII GATC 3 cut(s) 320, 353, 637
NlaIII CATG 3 cut(s) 419, 506, 781
NlaIV GGNNCC 3 cut(s) 97, 510, 718
NmuCI GTSAC 1 cut(s) 432
NspI RCATGY 1 cut(s) 506
PciI ACATGT 1 cut(s) 502
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 2 cut(s) 841, 848
PfeI GAWTC 1 cut(s) 606
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 4 cut(s) 109, 540, 550, 770
PpsI GAGTC 4 cut(s) 109, 540, 550, 770
Ppu21I YACGTR 1 cut(s) 22
PscI ACATGT 1 cut(s) 502
Psp6I CCWGG 4 cut(s) 87, 526, 609, 643
PspGI CCWGG 4 cut(s) 87, 526, 609, 643
PspN4I GGNNCC 3 cut(s) 97, 510, 718
PspPI GGNCC 1 cut(s) 716
PsuI RGATCY 1 cut(s) 320
RsaI GTAC 2 cut(s) 251, 568
RsaNI GTAC 2 cut(s) 250, 567
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 3 cut(s) 320, 353, 637
Sau96I GGNCC 1 cut(s) 716
ScaI AGTACT 1 cut(s) 568
SchI GAGTC 4 cut(s) 110, 541, 550, 771
ScrFI CCNGG 4 cut(s) 89, 528, 611, 645
SfaNI GCATC 2 cut(s) 640, 752
SinI GGWCC 1 cut(s) 716
SmlI CTYRAG 2 cut(s) 159, 558
SmoI CTYRAG 2 cut(s) 159, 558
Sse9I AATT 6 cut(s) 71, 116, 256, 274, 466, 785
SsiI CCGC 1 cut(s) 388
SspMI CTAG 3 cut(s) 216, 237, 593
StyD4I CCNGG 4 cut(s) 87, 526, 609, 643
StyI CCWWGG 3 cut(s) 184, 194, 815
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 2 cut(s) 24, 346
TasI AATT 6 cut(s) 71, 116, 256, 274, 466, 785
TatI WGTACW 2 cut(s) 249, 566
TfiI GAWTC 1 cut(s) 606
TscAI CASTG 3 cut(s) 363, 727, 828
TseFI GTSAC 1 cut(s) 432
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 432
TspDTI ATGAA 7 cut(s) 45, 51, 129, 276, 365, 440, 450
TspGWI ACGGA 1 cut(s) 797
TspRI CASTG 3 cut(s) 363, 727, 828
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 3 cut(s) 71, 116, 785
XceI RCATGY 1 cut(s) 506
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 3 cut(s) 216, 237, 593
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.