Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001622

Physical Location & Seq

Genomic Coordinates Reverse (-)

81326987 .. 81337013

Gene Structure 10027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG512000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGAAGATGTTCATGATGATGTGGGTGGCGAACTTCGTGGTAGAGAATTGGCTAGCTTGGAGTACTATGTGAATAGTGAAGTAGATGATACCACTGATGTTCAAGCAAGTAGAGGAGAAGACTTCCAAGGTATTCCTTGGGATAGACTTAGCATTACTAGAGAGAAATACCAGCAAACTAGGTTAGAAAGATACAAGAATTATGAGAACATTCCTAATTCCAGAGAAGGGTCAGGGAAGGACTGCAACATTAAAGAAAAAGGATCTTTATATTATGAGTTTCAATGCAACACAAGATCAGTGAAACCAACTATCCTTCATTTTCAGGTCATGATGTCTACCTTATGTCACATTTTTCTGTCATTCATGTCTTCATTAAGTTGCGAAGCATCTGAGGTTCTAAATGTTTCAGGACATGTCACACCATCAGAGAAACATCCTGGAAGTCTCTTGGAAGGATTTACACAGACTCAAGTTAGTAGTCTTGCAGTGAAAGATAAGTTGCTAGTTGCCGGAGGATTCCAAGGAGAACTTATTTTCAAGCATCTTGATCAACCTGGAGTTAGCTTTTGTTCGAGGACAACTGATGATGATAATGCCATTACAAATGCTATTGAGATTTATGACAATCCCAGTGGTGCAGCTCACTTTATATCCTCAAGTAATGATTGTGGAGTCAGAGACTTTGACATGGAGACATTTCAGCTTTTTAAGCATTTCCGTTTTCCTTGGCCAGCGAATCATACTTCTCTGAGTCCCGATGGTAAACTTTTTGTGATAGTTGGTGACAATCCAGATGGGATGTTGGTCGACTCTCAAACTGGCAAGGTGGTATTTACTTTACGCTTTTGTAAACTTACTTTAGAGGCAGGAATTGAAGACGGTGACGCCTTTGCTACTGGGAAGCAGGACAAAACCTGTCTCGTTTGGGATGTTCGAAACCTATCCAAGTCAGTTGCTGTTTTAAAGGGAAACCTTGGAGCTATTCGGTCAATCCGTTATACTTCTGATGGTCAGTATATGATGATGGCAGAGCCAGCAGACTTTGTGCATGTCTATGATGTGAAAAGTGGGTACGAGAAGGAGCAGGAAATCGATTTCTTTGGAGAGATATCTGGCATATCATTCAGTCCAGACACAGAGTCGCTTTTCATTGGAGGCATCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2415 WD40

Protein Analysis

389

Amino Acids

43.38

Weight (kDa)

4.82

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EML_2	PF23414	215 - 361	9.6e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	215 - 387	6.9e-11	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	293 - 386	4.6e-06	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	294 - 385	1.2e-10	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55680 AT3G13340 AT3G13340 AT3G13340
fragaria_vesca	FvH4_3g41630 FvH4_3g41640 FvH4_3g41650
malus_domestica	MD03G1042700.v1.1 MD03G1216600.v1.1 MD05G1255200.v1.1 MD11G1044000.v1.1 MD11G1045800.v1.1
prunus_persica	Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1
pyrus_communis	pycom03g03290 pycom11g03710
rosa_chinensis	RchiOBHm_Chr5g0074671 RchiOBHm_Chr5g0074681 RchiOBHm_Chr5g0074701 RchiOBHm_Chr5g0074741
rosa_laevigata	RLG00000036497
rosa_multiflora	Rmu_sc0000909.1_g000023 Rmu_sc0000909.1_g000027 Rmu_sc0008028.1_g000001 Rmu_sc0019386.1_g000002 Rmu_sc0019386.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006840 Rroxscaffold_1G00006860 Rroxscaffold_1G00006870
rosa_rugosa	Rorug05G0433500 Rorug05G0433600
rosa_samantha	Rh5AG490700 Rh5AG490800 Rh5AG491100 Rh5BG511800 Rh5BG512000 Rh5BG512300 Rh5BG512400 Rh5BG512500 Rh5CG535600 Rh5CG535700 Rh5CG536000 Rh5CG536100 Rh5DG524200 Rh5DG524500
rosa_wichuraiana	Rw5G045450 Rw5G045460 Rw5G045490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	338, 810
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	731
AcyI	GRCGYC	1 cut(s)	888
AfaI	GTAC	2 cut(s)	65, 1076
AfiI	CCNNNNNNNGG	1 cut(s)	228
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	4 cut(s)	104, 284, 541, 878
AhdI	GACNNNNNGTC	1 cut(s)	1141
AjnI	CCWGG	2 cut(s)	439, 556
AluBI	AGCT	5 cut(s)	57, 567, 644, 706, 983
AluI	AGCT	5 cut(s)	57, 567, 644, 706, 983
Alw26I	GTCTC	4 cut(s)	452, 675, 689, 926
AlwI	GGATC	1 cut(s)	271
AlwNI	CAGNNNCTG	1 cut(s)	959
AoxI	GGCC	1 cut(s)	731
ApeKI	GCWGC	1 cut(s)	641
Asp700I	GAANNNNTTC	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	797, 896
AsuII	TTCGAA	1 cut(s)	937
AsuNHI	GCTAGC	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	733
BbsI	GAAGAC	3 cut(s)	126, 363, 885
BbvI	GCAGC	1 cut(s)	653
BccI	CCATC	5 cut(s)	433, 755, 791, 1004, 1021
BciT130I	CCWGG	2 cut(s)	441, 558
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	4 cut(s)	452, 675, 689, 926
BfaI	CTAG	4 cut(s)	54, 159, 180, 506
BisI	GCNGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	643
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	2 cut(s)	441, 558
BmeRI	GACNNNNNGTC	1 cut(s)	1141
BmrFI	CCNGG	2 cut(s)	441, 558
BmrI	ACTGGG	2 cut(s)	627, 909
BmsI	GCATC	2 cut(s)	398, 553
BmtI	GCTAGC	1 cut(s)	57
BmuI	ACTGGG	2 cut(s)	627, 909
BpiI	GAAGAC	3 cut(s)	126, 363, 885
BpmI	CTGGAG	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	937
BpuEI	CTTGAG	2 cut(s)	456, 643
Bsa29I	ATCGAT	1 cut(s)	1095
BsaHI	GRCGYC	1 cut(s)	888
BsaJI	CCNNGG	5 cut(s)	127, 137, 523, 728, 976
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	3 cut(s)	633, 826, 904
BseBI	CCWGG	2 cut(s)	441, 558
BseCI	ATCGAT	1 cut(s)	1095
BseDI	CCNNGG	5 cut(s)	127, 137, 523, 728, 976
BseGI	GGATG	4 cut(s)	436, 807, 937, 1161
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	384, 743
BseNI	ACTGG	3 cut(s)	633, 826, 904
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	653
BsgI	GTGCAG	1 cut(s)	660
BshFI	GGCC	1 cut(s)	733
BshVI	ATCGAT	1 cut(s)	1095
BsiSI	CCGG	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	741
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	4 cut(s)	452, 675, 689, 926
BsmFI	GGGAC	1 cut(s)	741
BsnI	GGCC	1 cut(s)	733
Bsp119I	TTCGAA	1 cut(s)	937
Bsp143I	GATC	3 cut(s)	263, 296, 550
BspANI	GGCC	1 cut(s)	733
BspCNI	CTCAG	2 cut(s)	385, 744
BspDI	ATCGAT	1 cut(s)	1095
BspHI	TCATGA	2 cut(s)	13, 330
BspOI	GCTAGC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	271
BspT104I	TTCGAA	1 cut(s)	937
BsrI	ACTGG	3 cut(s)	633, 826, 904
BssECI	CCNNGG	5 cut(s)	127, 137, 523, 728, 976
BssMI	GATC	3 cut(s)	263, 296, 550
BssNI	GRCGYC	1 cut(s)	888
BssT1I	CCWWGG	5 cut(s)	127, 137, 523, 728, 976
Bst2UI	CCWGG	2 cut(s)	441, 558
Bst4CI	ACNGT	1 cut(s)	884
BstACI	GRCGYC	1 cut(s)	888
BstBI	TTCGAA	1 cut(s)	937
BstC8I	GCNNGC	3 cut(s)	55, 735, 1038
BstDEI	CTNAG	3 cut(s)	149, 393, 752
BstF5I	GGATG	4 cut(s)	436, 807, 937, 1161
BstKTI	GATC	3 cut(s)	266, 299, 553
BstMAI	GTCTC	4 cut(s)	452, 675, 689, 926
BstMBI	GATC	3 cut(s)	263, 296, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	712, 1037
BstNI	CCWGG	2 cut(s)	441, 558
BstNSI	RCATGY	2 cut(s)	419, 1055
BstSCI	CCNGG	2 cut(s)	439, 556
BstV1I	GCAGC	1 cut(s)	653
BstV2I	GAAGAC	3 cut(s)	126, 363, 885
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
Bsu15I	ATCGAT	1 cut(s)	1095
BsuRI	GGCC	1 cut(s)	733
BsuTUI	ATCGAT	1 cut(s)	1095
BtsCI	GGATG	4 cut(s)	436, 807, 937, 1161
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	4 cut(s)	93, 306, 495, 640
Cac8I	GCNNGC	3 cut(s)	55, 735, 1038
CaiI	CAGNNNCTG	1 cut(s)	959
CciI	TCATGA	2 cut(s)	13, 330
ClaI	ATCGAT	1 cut(s)	1095
CseI	GACGC	1 cut(s)	896
Csp6I	GTAC	2 cut(s)	64, 1075
CspCI	CAANNNNNGTGG	2 cut(s)	616, 651
CviAII	CATG	6 cut(s)	14, 331, 367, 416, 691, 1052
CviJI	RGCY	8 cut(s)	53, 57, 567, 644, 706, 733, 983, 1036
CviKI_1	RGCY	8 cut(s)	53, 57, 567, 644, 706, 733, 983, 1036
CviQI	GTAC	2 cut(s)	64, 1075
DdeI	CTNAG	3 cut(s)	149, 393, 752
DpnI	GATC	3 cut(s)	265, 298, 552
DpnII	GATC	3 cut(s)	263, 296, 550
DraI	TTTAAA	1 cut(s)	966
DriI	GACNNNNNGTC	1 cut(s)	1141
EaeI	YGGCCR	1 cut(s)	731
Eam1105I	GACNNNNNGTC	1 cut(s)	1141
Eco130I	CCWWGG	5 cut(s)	127, 137, 523, 728, 976
Eco32I	GATATC	1 cut(s)	1113
EcoRII	CCWGG	2 cut(s)	439, 556
EcoRV	GATATC	1 cut(s)	1113
EcoT14I	CCWWGG	5 cut(s)	127, 137, 523, 728, 976
ErhI	CCWWGG	5 cut(s)	127, 137, 523, 728, 976
FaeI	CATG	6 cut(s)	17, 334, 370, 419, 694, 1055
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	1 cut(s)	741
FatI	CATG	6 cut(s)	13, 330, 366, 415, 690, 1051
FbaI	TGATCA	1 cut(s)	550
FblI	GTMKAC	2 cut(s)	338, 810
Fnu4HI	GCNGC	1 cut(s)	642
FokI	GGATG	4 cut(s)	423, 814, 944, 1148
Fsp4HI	GCNGC	1 cut(s)	642
FspBI	CTAG	4 cut(s)	54, 159, 180, 506
GluI	GCNGC	1 cut(s)	642
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	733
HapII	CCGG	1 cut(s)	513
HgaI	GACGC	1 cut(s)	896
Hin1I	GRCGYC	1 cut(s)	888
Hin1II	CATG	6 cut(s)	17, 334, 370, 419, 694, 1055
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HinfI	GANTC	7 cut(s)	469, 519, 675, 739, 754, 812, 1142
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	2 cut(s)	797, 896
Hpy166II	GTNNAC	4 cut(s)	339, 767, 811, 854
Hpy188I	TCNGA	5 cut(s)	394, 430, 680, 753, 1009
Hpy188III	TCNNGA	8 cut(s)	14, 222, 331, 411, 548, 758, 794, 1133
Hpy8I	GTNNAC	4 cut(s)	339, 767, 811, 854
HpyAV	CCTTC	5 cut(s)	221, 232, 326, 449, 1075
HpyCH4III	ACNGT	1 cut(s)	884
HpyCH4V	TGCA	5 cut(s)	246, 288, 488, 641, 1051
HpyF10VI	GCNNNNNNNGC	2 cut(s)	712, 1037
HpyF3I	CTNAG	3 cut(s)	149, 393, 752
Hsp92I	GRCGYC	1 cut(s)	888
Hsp92II	CATG	6 cut(s)	17, 334, 370, 419, 694, 1055
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	263, 296, 550
LmnI	GCTCC	2 cut(s)	980, 1084
Lsp1109I	GCAGC	1 cut(s)	653
LweI	GCATC	2 cut(s)	398, 553
MaeI	CTAG	4 cut(s)	54, 159, 180, 506
MaeIII	GTNAC	4 cut(s)	347, 418, 785, 884
MalI	GATC	3 cut(s)	265, 298, 552
MboI	GATC	3 cut(s)	263, 296, 550
MboII	GAAGA	4 cut(s)	17, 131, 363, 890
MflI	RGATCY	1 cut(s)	263
MlsI	TGGCCA	1 cut(s)	733
MluCI	AATT	4 cut(s)	47, 199, 217, 873
MluNI	TGGCCA	1 cut(s)	733
MlyI	GAGTC	5 cut(s)	463, 684, 763, 806, 1151
MnlI	CCTC	7 cut(s)	107, 388, 509, 570, 667, 859, 1151
Mox20I	TGGCCA	1 cut(s)	733
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	733
MseI	TTAA	5 cut(s)	252, 377, 711, 965, 1168
MslI	CAYNNNNRTG	2 cut(s)	18, 1056
Msp20I	TGGCCA	1 cut(s)	733
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	2 cut(s)	441, 558
MvaI	CCWGG	2 cut(s)	441, 558
MwoI	GCNNNNNNNGC	2 cut(s)	712, 1037
NdeII	GATC	3 cut(s)	263, 296, 550
NheI	GCTAGC	1 cut(s)	53
NlaIII	CATG	6 cut(s)	17, 334, 370, 419, 694, 1055
NmuCI	GTSAC	4 cut(s)	347, 418, 785, 884
NspI	RCATGY	2 cut(s)	419, 1055
NspV	TTCGAA	1 cut(s)	937
PagI	TCATGA	2 cut(s)	13, 330
PciI	ACATGT	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	994
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	519, 739
PfoI	TCCNGGA	1 cut(s)	439
PkrI	GCNGC	1 cut(s)	643
PleI	GAGTC	5 cut(s)	463, 683, 762, 806, 1150
PpsI	GAGTC	5 cut(s)	463, 683, 762, 806, 1150
PscI	ACATGT	1 cut(s)	415
Psp6I	CCWGG	2 cut(s)	439, 556
PspGI	CCWGG	2 cut(s)	439, 556
PstNI	CAGNNNCTG	1 cut(s)	959
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	2 cut(s)	65, 1076
RsaNI	GTAC	2 cut(s)	64, 1075
RseI	CAYNNNNRTG	2 cut(s)	18, 1056
SalI	GTCGAC	1 cut(s)	809
SaqAI	TTAA	5 cut(s)	252, 377, 711, 965, 1168
SatI	GCNGC	1 cut(s)	642
Sau3AI	GATC	3 cut(s)	263, 296, 550
ScaI	AGTACT	1 cut(s)	65
SchI	GAGTC	5 cut(s)	463, 684, 763, 806, 1151
ScrFI	CCNGG	2 cut(s)	441, 558
SfaNI	GCATC	2 cut(s)	398, 553
SfuI	TTCGAA	1 cut(s)	937
SmiMI	CAYNNNNRTG	2 cut(s)	18, 1056
SmlI	CTYRAG	2 cut(s)	471, 658
SmoI	CTYRAG	2 cut(s)	471, 658
Sse9I	AATT	4 cut(s)	47, 199, 217, 873
SspMI	CTAG	4 cut(s)	54, 159, 180, 506
StyD4I	CCNGG	2 cut(s)	439, 556
StyI	CCWWGG	5 cut(s)	127, 137, 523, 728, 976
TaaI	ACNGT	1 cut(s)	884
TaqI	TCGA	4 cut(s)	575, 810, 937, 1095
TaqII	GACCGA	1 cut(s)	978
TasI	AATT	4 cut(s)	47, 199, 217, 873
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	519, 739
Tru1I	TTAA	5 cut(s)	252, 377, 711, 965, 1168
Tru9I	TTAA	5 cut(s)	252, 377, 711, 965, 1168
TscAI	CASTG	4 cut(s)	100, 306, 495, 640
TseFI	GTSAC	4 cut(s)	347, 418, 785, 884
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	4 cut(s)	347, 418, 785, 884
TspDTI	ATGAA	4 cut(s)	308, 355, 363, 1141
TspGWI	ACGGA	2 cut(s)	710, 986
TspRI	CASTG	4 cut(s)	100, 306, 495, 640
XceI	RCATGY	2 cut(s)	419, 1055
XmiI	GTMKAC	2 cut(s)	338, 810
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	4 cut(s)	54, 159, 180, 506
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.