Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019386.1

Orthogroup ID

OG0001622

Physical Location & Seq

Genomic Coordinates Reverse (-)

9400 .. 12172

Gene Structure 2773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019386.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atggaagatgtgcatgatgatgtgggtggtgaatttcgtggtagagaaatggctggctcgaagtctgatgctcatgaatcggactacgggaatagtgaaatagatgataccactgatgttcaaacaagtagaggagaagacttccaaggtattccttgggatagacttagcattactagagagaaataccagcaaactaggttagaaagatacaagaattatgagaacattcctaattccagagaagggtcagggaaggactgcagcattacaaaaaaaaggtgtttatattatgagtttcaatgcaacacaagatcagtgaagccaactgttcatcattttcagaaacatcccggaagtctcttggagggatttacacagactaaagttagtagtcttgcagtgaaagataagttgctagtttctggaggattcaagggagaacttatttgcaaggtgactggtgatgataatgccgttacaaatgctgttgagatttatgacaatcccagtggtgcagttcactttacagcctcaagtaatgattgtggagtcagagactttgacatggaggcatttcagctttctaaccatttccattttccttggccacatacttctctgagtcccaatggtaaacttcttgtggtagttggtgacaatccggatgggatgttggtcgatgctcaaactggaaagacgctgacgcctttatgtggacacctggattcctcatttgcatcagcgtggcatcctgatggtgtcacctttgctactgggaaccagaacaaaacctgtcggtgcgggtacgagaaggagcaggaaattgatttctttggtgcgatatctggcatatcattcagtccagacacagagtcgcttttcattggagtacgggatcttacgtatggtggtcttctcgagtatggaagacaaaagtgtgttgcttatgagatcctgatatttaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2415 WD40

Protein Analysis

323

Amino Acids

35.88

Weight (kDa)

5.15

Isoelectric Point (pI)

17.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55680 AT3G13340 AT3G13340 AT3G13340
fragaria_vesca	FvH4_3g41630 FvH4_3g41640 FvH4_3g41650
malus_domestica	MD03G1042700.v1.1 MD03G1216600.v1.1 MD05G1255200.v1.1 MD11G1044000.v1.1 MD11G1045800.v1.1
prunus_persica	Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1
pyrus_communis	pycom03g03290 pycom11g03710
rosa_chinensis	RchiOBHm_Chr5g0074671 RchiOBHm_Chr5g0074681 RchiOBHm_Chr5g0074701 RchiOBHm_Chr5g0074741
rosa_laevigata	RLG00000036497
rosa_multiflora	Rmu_sc0000909.1_g000023 Rmu_sc0000909.1_g000027 Rmu_sc0008028.1_g000001 Rmu_sc0019386.1_g000002 Rmu_sc0019386.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006840 Rroxscaffold_1G00006860 Rroxscaffold_1G00006870
rosa_rugosa	Rorug05G0433500 Rorug05G0433600
rosa_samantha	Rh5AG490700 Rh5AG490800 Rh5AG491100 Rh5BG511800 Rh5BG512000 Rh5BG512300 Rh5BG512400 Rh5BG512500 Rh5CG535600 Rh5CG535700 Rh5CG536000 Rh5CG536100 Rh5DG524200 Rh5DG524500
rosa_wichuraiana	Rw5G045450 Rw5G045460 Rw5G045490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	664
AciI	CCGC	1 cut(s)	804
AclWI	GGATC	2 cut(s)	906, 949
AcoI	YGGCCR	1 cut(s)	608
AcsI	RAATTY	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	707
AfaI	GTAC	2 cut(s)	809, 894
AfiI	CCNNNNNNNGG	2 cut(s)	246, 716
AgsI	TTSAA	3 cut(s)	122, 302, 436
AhdI	GACNNNNNGTC	1 cut(s)	874
AjnI	CCWGG	1 cut(s)	723
AluBI	AGCT	1 cut(s)	583
AluI	AGCT	1 cut(s)	583
Alw26I	GTCTC	2 cut(s)	365, 552
AlwI	GGATC	2 cut(s)	906, 949
Ama87I	CYCGRG	1 cut(s)	920
Aor13HI	TCCGGA	1 cut(s)	664
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	1 cut(s)	264
ApoI	RAATTY	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	5 cut(s)	41, 469, 476, 668, 757
AvaI	CYCGRG	1 cut(s)	920
BalI	TGGCCA	1 cut(s)	610
BbsI	GAAGAC	3 cut(s)	144, 908, 937
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	2 cut(s)	662, 752
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	1 cut(s)	725
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	365, 552
BfaI	CTAG	3 cut(s)	177, 198, 419
BfmI	CTRYAG	1 cut(s)	262
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
Bme1390I	CCNGG	2 cut(s)	354, 725
BmeRI	GACNNNNNGTC	1 cut(s)	874
BmeT110I	CYCGRG	1 cut(s)	920
BmiI	GGNNCC	1 cut(s)	782
BmrFI	CCNGG	2 cut(s)	354, 725
BmrI	ACTGGG	2 cut(s)	504, 786
BmsI	GCATC	4 cut(s)	58, 673, 749, 760
BmuI	ACTGGG	2 cut(s)	504, 786
BpiI	GAAGAC	3 cut(s)	144, 908, 937
BpmI	CTGGAG	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	520
BpuMI	CCSGG	1 cut(s)	354
BsaAI	YACGTR	1 cut(s)	906
BsaHI	GRCGYC	1 cut(s)	707
BsaJI	CCNNGG	3 cut(s)	145, 155, 605
BsaWI	WCCGGW	1 cut(s)	664
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 716
Bse1I	ACTGG	4 cut(s)	466, 510, 697, 781
BseAI	TCCGGA	1 cut(s)	664
BseBI	CCWGG	1 cut(s)	725
BseDI	CCNNGG	3 cut(s)	145, 155, 605
BseGI	GGATG	4 cut(s)	349, 673, 678, 751
BseLI	CCNNNNNNNGG	2 cut(s)	246, 716
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	4 cut(s)	466, 510, 697, 781
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	276
BsgI	GTGCAG	1 cut(s)	537
BshFI	GGCC	1 cut(s)	610
BsiHKCI	CYCGRG	1 cut(s)	920
BsiSI	CCGG	2 cut(s)	354, 665
BslFI	GGGAC	1 cut(s)	612
BslI	CCNNNNNNNGG	2 cut(s)	246, 716
BsmAI	GTCTC	2 cut(s)	365, 552
BsmFI	GGGAC	1 cut(s)	612
BsnI	GGCC	1 cut(s)	610
BsoBI	CYCGRG	1 cut(s)	920
Bsp13I	TCCGGA	1 cut(s)	664
Bsp143I	GATC	3 cut(s)	314, 898, 954
BspACI	CCGC	1 cut(s)	804
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	1 cut(s)	615
BspEI	TCCGGA	1 cut(s)	664
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	782
BspMAI	CTGCAG	1 cut(s)	266
BspPI	GGATC	2 cut(s)	906, 949
BsrI	ACTGG	4 cut(s)	466, 510, 697, 781
BssECI	CCNNGG	3 cut(s)	145, 155, 605
BssMI	GATC	3 cut(s)	314, 898, 954
BssNI	GRCGYC	1 cut(s)	707
BssT1I	CCWWGG	3 cut(s)	145, 155, 605
Bst2UI	CCWGG	1 cut(s)	725
Bst4CI	ACNGT	1 cut(s)	331
BstACI	GRCGYC	1 cut(s)	707
BstBAI	YACGTR	1 cut(s)	906
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	167, 623
BstF5I	GGATG	4 cut(s)	349, 673, 678, 751
BstKTI	GATC	3 cut(s)	317, 901, 957
BstMAI	GTCTC	2 cut(s)	365, 552
BstMBI	GATC	3 cut(s)	314, 898, 954
BstNI	CCWGG	1 cut(s)	725
BstSCI	CCNGG	2 cut(s)	352, 723
BstSFI	CTRYAG	1 cut(s)	262
BstSNI	TACGTA	1 cut(s)	906
BstV1I	GCAGC	1 cut(s)	276
BstV2I	GAAGAC	3 cut(s)	144, 908, 937
BstX2I	RGATCY	2 cut(s)	898, 954
BstYI	RGATCY	2 cut(s)	898, 954
BsuRI	GGCC	1 cut(s)	610
BtsCI	GGATG	4 cut(s)	349, 673, 678, 751
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	4 cut(s)	111, 324, 408, 517
Cac8I	GCNNGC	1 cut(s)	55
CciI	TCATGA	1 cut(s)	73
CseI	GACGC	2 cut(s)	709, 715
Csp6I	GTAC	2 cut(s)	808, 893
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	3 cut(s)	14, 74, 568
CviJI	RGCY	6 cut(s)	53, 57, 325, 533, 583, 610
CviKI_1	RGCY	6 cut(s)	53, 57, 325, 533, 583, 610
CviQI	GTAC	2 cut(s)	808, 893
DdeI	CTNAG	2 cut(s)	167, 623
DpnI	GATC	3 cut(s)	316, 900, 956
DpnII	GATC	3 cut(s)	314, 898, 954
DriI	GACNNNNNGTC	1 cut(s)	874
EaeI	YGGCCR	1 cut(s)	608
Eam1105I	GACNNNNNGTC	1 cut(s)	874
Eco105I	TACGTA	1 cut(s)	906
Eco130I	CCWWGG	3 cut(s)	145, 155, 605
Eco32I	GATATC	1 cut(s)	846
Eco88I	CYCGRG	1 cut(s)	920
EcoRII	CCWGG	1 cut(s)	723
EcoRV	GATATC	1 cut(s)	846
EcoT14I	CCWWGG	3 cut(s)	145, 155, 605
ErhI	CCWWGG	3 cut(s)	145, 155, 605
FaeI	CATG	3 cut(s)	17, 77, 571
FaqI	GGGAC	1 cut(s)	612
FatI	CATG	3 cut(s)	13, 73, 567
FauI	CCCGC	1 cut(s)	797
Fnu4HI	GCNGC	1 cut(s)	265
FokI	GGATG	4 cut(s)	336, 680, 685, 738
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	3 cut(s)	177, 198, 419
GluI	GCNGC	1 cut(s)	265
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	2 cut(s)	354, 665
HgaI	GACGC	2 cut(s)	709, 715
Hin1I	GRCGYC	1 cut(s)	707
Hin1II	CATG	3 cut(s)	17, 77, 571
HinfI	GANTC	6 cut(s)	77, 432, 552, 625, 728, 875
HpaII	CCGG	2 cut(s)	354, 665
HphI	GGTGA	5 cut(s)	41, 469, 476, 668, 757
Hpy166II	GTNNAC	3 cut(s)	523, 638, 719
Hpy188I	TCNGA	5 cut(s)	67, 82, 345, 557, 624
Hpy188III	TCNNGA	8 cut(s)	74, 240, 426, 665, 755, 866, 920, 958
Hpy8I	GTNNAC	3 cut(s)	523, 638, 719
HpyAV	CCTTC	3 cut(s)	239, 250, 808
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	905
HpyCH4V	TGCA	7 cut(s)	13, 264, 306, 401, 453, 518, 740
HpyF3I	CTNAG	2 cut(s)	167, 623
HpySE526I	ACGT	1 cut(s)	905
Hsp92I	GRCGYC	1 cut(s)	707
Hsp92II	CATG	3 cut(s)	17, 77, 571
Kpn2I	TCCGGA	1 cut(s)	664
Kzo9I	GATC	3 cut(s)	314, 898, 954
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	4 cut(s)	58, 673, 749, 760
MaeI	CTAG	3 cut(s)	177, 198, 419
MaeII	ACGT	1 cut(s)	905
MaeIII	GTNAC	4 cut(s)	457, 478, 656, 763
MalI	GATC	3 cut(s)	316, 900, 956
MboI	GATC	3 cut(s)	314, 898, 954
MboII	GAAGA	4 cut(s)	17, 149, 908, 942
MflI	RGATCY	2 cut(s)	898, 954
MlsI	TGGCCA	1 cut(s)	610
MluCI	AATT	5 cut(s)	32, 217, 235, 825, 967
MluNI	TGGCCA	1 cut(s)	610
MlyI	GAGTC	3 cut(s)	561, 634, 884
MnlI	CCTC	6 cut(s)	125, 361, 422, 544, 565, 742
Mox20I	TGGCCA	1 cut(s)	610
MroI	TCCGGA	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	610
MseI	TTAA	1 cut(s)	966
MslI	CAYNNNNRTG	3 cut(s)	18, 745, 756
Msp20I	TGGCCA	1 cut(s)	610
MspI	CCGG	2 cut(s)	354, 665
MspR9I	CCNGG	2 cut(s)	354, 725
MvaI	CCWGG	1 cut(s)	725
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	3 cut(s)	314, 898, 954
NlaIII	CATG	3 cut(s)	17, 77, 571
NlaIV	GGNNCC	1 cut(s)	782
NmuCI	GTSAC	3 cut(s)	457, 656, 763
PaeR7I	CTCGAG	1 cut(s)	920
PagI	TCATGA	1 cut(s)	73
PfeI	GAWTC	3 cut(s)	77, 432, 728
PfoI	TCCNGGA	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	266
PleI	GAGTC	3 cut(s)	560, 633, 883
PpsI	GAGTC	3 cut(s)	560, 633, 883
Ppu21I	YACGTR	1 cut(s)	906
Psp6I	CCWGG	1 cut(s)	723
PspGI	CCWGG	1 cut(s)	723
PspN4I	GGNNCC	1 cut(s)	782
PstI	CTGCAG	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	898, 954
RsaI	GTAC	2 cut(s)	809, 894
RsaNI	GTAC	2 cut(s)	808, 893
RseI	CAYNNNNRTG	3 cut(s)	18, 745, 756
SaqAI	TTAA	1 cut(s)	966
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	3 cut(s)	314, 898, 954
SchI	GAGTC	3 cut(s)	561, 634, 884
ScrFI	CCNGG	2 cut(s)	354, 725
SetI	ASST	9 cut(s)	151, 203, 284, 459, 585, 726, 770, 797, 908
SfaNI	GCATC	4 cut(s)	58, 673, 749, 760
SfcI	CTRYAG	1 cut(s)	262
Sfr274I	CTCGAG	1 cut(s)	920
SlaI	CTCGAG	1 cut(s)	920
SmiMI	CAYNNNNRTG	3 cut(s)	18, 745, 756
SmlI	CTYRAG	2 cut(s)	535, 920
SmoI	CTYRAG	2 cut(s)	535, 920
SnaBI	TACGTA	1 cut(s)	906
Sse9I	AATT	5 cut(s)	32, 217, 235, 825, 967
SsiI	CCGC	1 cut(s)	804
SspMI	CTAG	3 cut(s)	177, 198, 419
StyD4I	CCNGG	2 cut(s)	352, 723
StyI	CCWWGG	3 cut(s)	145, 155, 605
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	1 cut(s)	908
TaqI	TCGA	3 cut(s)	59, 681, 921
TasI	AATT	5 cut(s)	32, 217, 235, 825, 967
TfiI	GAWTC	3 cut(s)	77, 432, 728
Tru1I	TTAA	1 cut(s)	966
Tru9I	TTAA	1 cut(s)	966
TscAI	CASTG	4 cut(s)	118, 324, 408, 517
TseFI	GTSAC	3 cut(s)	457, 656, 763
TseI	GCWGC	1 cut(s)	264
Tsp45I	GTSAC	3 cut(s)	457, 656, 763
TspDTI	ATGAA	3 cut(s)	90, 323, 874
TspRI	CASTG	4 cut(s)	118, 324, 408, 517
XapI	RAATTY	1 cut(s)	32
XhoI	CTCGAG	1 cut(s)	920
XspI	CTAG	3 cut(s)	177, 198, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.