Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001622

Physical Location & Seq

Genomic Coordinates Forward (+)

3985257 .. 3988893

Gene Structure 3637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1045800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCCCATTACGCTGGTTATGTGGAGGATGAATACGAAATGGAAGATGTAGATGATGATATGGATGATGAGTTTCACGGTAGAGAAATGGGCGCCTCAGATTCTGATGTTGATGAATATGACTACTCGAATAGTAAAGTAGCTGATACAACTGCTGCTCAAGCAAGAAAAGGAAAAGACATCCAAGGTATTCCTTGGGATAGACTTAGCATTACTAGAGAGAAATACCGACAGACTAGGTTAGAACAATACAAGAATTATGAGAATATCCCTAATTCCGGAGAAGGATCAGGGAAGGATTGCAAAGATACAAAGAAAGGATCTGTATATTATCAGTTCAGACGAAATGCTAGATCAGTGAAATCAACCATTCTTCATTTTCAGTTGCGTAACTTGGTCTGGGCTACTTCCAAGCATGATGTCTACCTGATGTCACATTTTTCTGTCATTCATTGGTCTTCATTAAGTTGCACAAAGTCTGAGGTTCTCAATGTTTCTGGACATGTGGCACCATCTGAGAAACATCCTGGAAGTCTCTTGGAGGGATTTACGCAGACTCAAGTTAGTACTCTTTCTGTAAAAGATAAGTTGCTAGTTGCTGGAGGATTCCAGGGTGAACTTATTTGCAAGCATCTTGATCGGCCTGGAGTCAGCTTTTGTTCAAGGACAACTTATGACGATAATGCCATAACAAATGCTGTTGAGATTTATGACAGTCCCAGCGGGGCAGTTCACTTTACAGCCTCTAACAATGACTCTGGAGTCAGAGATTTTGACATGGAGAAATTTCAGCTTACTAAGCATTTCCATTACCCTTGGCCTGTGAATGTAAGTCTCCTGCAGCTTTTCTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2415 WD40

Protein Analysis

286

Amino Acids

32.44

Weight (kDa)

5.63

Isoelectric Point (pI)

31.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55680 AT3G13340 AT3G13340 AT3G13340
fragaria_vesca	FvH4_3g41630 FvH4_3g41640 FvH4_3g41650
malus_domestica	MD03G1042700.v1.1 MD03G1216600.v1.1 MD05G1255200.v1.1 MD11G1044000.v1.1 MD11G1045800.v1.1
prunus_persica	Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1
pyrus_communis	pycom03g03290 pycom11g03710
rosa_chinensis	RchiOBHm_Chr5g0074671 RchiOBHm_Chr5g0074681 RchiOBHm_Chr5g0074701 RchiOBHm_Chr5g0074741
rosa_laevigata	RLG00000036497
rosa_multiflora	Rmu_sc0000909.1_g000023 Rmu_sc0000909.1_g000027 Rmu_sc0008028.1_g000001 Rmu_sc0019386.1_g000002 Rmu_sc0019386.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006840 Rroxscaffold_1G00006860 Rroxscaffold_1G00006870
rosa_rugosa	Rorug05G0433500 Rorug05G0433600
rosa_samantha	Rh5AG490700 Rh5AG490800 Rh5AG491100 Rh5BG511800 Rh5BG512000 Rh5BG512300 Rh5BG512400 Rh5BG512500 Rh5CG535600 Rh5CG535700 Rh5CG536000 Rh5CG536100 Rh5DG524200 Rh5DG524500
rosa_wichuraiana	Rw5G045450 Rw5G045460 Rw5G045490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	761
AccB1I	GGYRCC	2 cut(s)	92, 508
AccI	GTMKAC	1 cut(s)	423
AccIII	TCCGGA	1 cut(s)	278
AciI	CCGC	1 cut(s)	723
AclWI	GGATC	2 cut(s)	295, 328
AcsI	RAATTY	1 cut(s)	785
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	1 cut(s)	663
AjnI	CCWGG	3 cut(s)	526, 609, 643
AluBI	AGCT	4 cut(s)	143, 654, 793, 844
AluI	AGCT	4 cut(s)	143, 654, 793, 844
Alw26I	GTCTC	2 cut(s)	539, 839
AlwI	GGATC	2 cut(s)	295, 328
AlwNI	CAGNNNCTG	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	278
AoxI	GGCC	2 cut(s)	641, 818
ApeKI	GCWGC	2 cut(s)	155, 841
ApoI	RAATTY	1 cut(s)	785
AspLEI	GCGC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	626
BanI	GGYRCC	2 cut(s)	92, 508
BbsI	GAAGAC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	142, 853
BccI	CCATC	1 cut(s)	520
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciT130I	CCWGG	3 cut(s)	528, 611, 645
BcoDI	GTCTC	2 cut(s)	539, 839
BfaI	CTAG	4 cut(s)	216, 237, 351, 593
BfmI	CTRYAG	1 cut(s)	839
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	2 cut(s)	156, 842
BlsI	GCNGC	2 cut(s)	157, 843
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	3 cut(s)	528, 611, 645
BmiI	GGNNCC	2 cut(s)	94, 510
BmrFI	CCNGG	3 cut(s)	528, 611, 645
BmsI	GCATC	1 cut(s)	640
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	3 cut(s)	621, 666, 780
BpuEI	CTTGAG	2 cut(s)	144, 543
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	4 cut(s)	184, 194, 610, 815
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
BseAI	TCCGGA	1 cut(s)	278
BseBI	CCWGG	3 cut(s)	528, 611, 645
BseDI	CCNNGG	4 cut(s)	184, 194, 610, 815
BseGI	GGATG	4 cut(s)	34, 70, 180, 523
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	3 cut(s)	111, 471, 507
BseXI	GCAGC	2 cut(s)	142, 853
BseYI	CCCAGC	1 cut(s)	719
BshFI	GGCC	2 cut(s)	643, 820
BshNI	GGYRCC	2 cut(s)	92, 508
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	702
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	2 cut(s)	539, 839
BsmFI	GGGAC	1 cut(s)	702
BsnI	GGCC	2 cut(s)	643, 820
Bsp13I	TCCGGA	1 cut(s)	278
Bsp143I	GATC	4 cut(s)	287, 320, 353, 637
BspACI	CCGC	1 cut(s)	723
BspANI	GGCC	2 cut(s)	643, 820
BspCNI	CTCAG	3 cut(s)	110, 472, 508
BspEI	TCCGGA	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	94, 510
BspMAI	CTGCAG	1 cut(s)	843
BspPI	GGATC	2 cut(s)	295, 328
BspT107I	GGYRCC	2 cut(s)	92, 508
BssECI	CCNNGG	4 cut(s)	184, 194, 610, 815
BssMI	GATC	4 cut(s)	287, 320, 353, 637
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	3 cut(s)	184, 194, 815
Bst2UI	CCWGG	3 cut(s)	528, 611, 645
Bst4CI	ACNGT	2 cut(s)	80, 716
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	629
BstDEI	CTNAG	5 cut(s)	97, 206, 480, 516, 798
BstF5I	GGATG	4 cut(s)	34, 70, 180, 523
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	4 cut(s)	290, 323, 356, 640
BstMAI	GTCTC	2 cut(s)	539, 839
BstMBI	GATC	4 cut(s)	287, 320, 353, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 799
BstNI	CCWGG	3 cut(s)	528, 611, 645
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	3 cut(s)	526, 609, 643
BstSFI	CTRYAG	1 cut(s)	839
BstV1I	GCAGC	2 cut(s)	142, 853
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	320
BstXI	CCANNNNNNTGG	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	643, 820
BtsCI	GGATG	4 cut(s)	34, 70, 180, 523
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	629
CaiI	CAGNNNCTG	1 cut(s)	104
CfoI	GCGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	3 cut(s)	416, 503, 778
CviJI	RGCY	8 cut(s)	143, 404, 643, 654, 743, 793, 820, 844
CviKI_1	RGCY	8 cut(s)	143, 404, 643, 654, 743, 793, 820, 844
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	5 cut(s)	97, 206, 480, 516, 798
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	4 cut(s)	289, 322, 355, 639
DpnII	GATC	4 cut(s)	287, 320, 353, 637
DrdI	GACNNNNNNGTC	1 cut(s)	761
DseDI	GACNNNNNNGTC	1 cut(s)	761
Eco130I	CCWWGG	3 cut(s)	184, 194, 815
EcoRII	CCWGG	3 cut(s)	526, 609, 643
EcoT14I	CCWWGG	3 cut(s)	184, 194, 815
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
ErhI	CCWWGG	3 cut(s)	184, 194, 815
FaeI	CATG	3 cut(s)	419, 506, 781
FalI	AAGNNNNNCTT	2 cut(s)	655, 687
FaqI	GGGAC	1 cut(s)	702
FatI	CATG	3 cut(s)	415, 502, 777
FauI	CCCGC	1 cut(s)	716
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	156, 842
FokI	GGATG	4 cut(s)	41, 77, 167, 510
Fsp4HI	GCNGC	2 cut(s)	156, 842
FspBI	CTAG	4 cut(s)	216, 237, 351, 593
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	2 cut(s)	156, 842
GsaI	CCCAGC	1 cut(s)	723
GsuI	CTGGAG	3 cut(s)	621, 666, 780
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	643, 820
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	419, 506, 781
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	6 cut(s)	101, 556, 606, 648, 755, 762
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	3 cut(s)	424, 617, 733
Hpy188I	TCNGA	6 cut(s)	100, 106, 341, 481, 517, 767
Hpy188III	TCNNGA	5 cut(s)	279, 498, 635, 759, 850
Hpy8I	GTNNAC	3 cut(s)	424, 617, 733
HpyAV	CCTTC	2 cut(s)	278, 289
HpyCH4III	ACNGT	2 cut(s)	80, 716
HpyCH4V	TGCA	4 cut(s)	303, 471, 627, 841
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 799
HpyF3I	CTNAG	5 cut(s)	97, 206, 480, 516, 798
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	419, 506, 781
HspAI	GCGC	1 cut(s)	93
KasI	GGCGCC	1 cut(s)	92
Kpn2I	TCCGGA	1 cut(s)	278
Kzo9I	GATC	4 cut(s)	287, 320, 353, 637
Lsp1109I	GCAGC	2 cut(s)	142, 853
LweI	GCATC	1 cut(s)	640
MaeI	CTAG	4 cut(s)	216, 237, 351, 593
MaeIII	GTNAC	2 cut(s)	389, 432
MalI	GATC	4 cut(s)	289, 322, 355, 639
MboI	GATC	4 cut(s)	287, 320, 353, 637
MboII	GAAGA	3 cut(s)	56, 365, 450
MflI	RGATCY	1 cut(s)	320
MluCI	AATT	3 cut(s)	256, 274, 785
Mly113I	GGCGCC	1 cut(s)	93
MlyI	GAGTC	4 cut(s)	550, 657, 749, 771
MnlI	CCTC	6 cut(s)	19, 106, 475, 535, 596, 754
MroI	TCCGGA	1 cut(s)	278
MseI	TTAA	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	723
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	3 cut(s)	528, 611, 645
MvaI	CCWGG	3 cut(s)	528, 611, 645
MwoI	GCNNNNNNNGC	2 cut(s)	161, 799
NarI	GGCGCC	1 cut(s)	93
NdeII	GATC	4 cut(s)	287, 320, 353, 637
NlaIII	CATG	3 cut(s)	419, 506, 781
NlaIV	GGNNCC	2 cut(s)	94, 510
NmuCI	GTSAC	1 cut(s)	432
NspI	RCATGY	1 cut(s)	506
PciI	ACATGT	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	101, 606
PfoI	TCCNGGA	1 cut(s)	526
PkrI	GCNGC	2 cut(s)	157, 843
PleI	GAGTC	4 cut(s)	550, 656, 749, 770
PluTI	GGCGCC	1 cut(s)	96
PpsI	GAGTC	4 cut(s)	550, 656, 749, 770
PscI	ACATGT	1 cut(s)	502
Psp6I	CCWGG	3 cut(s)	526, 609, 643
PspFI	CCCAGC	1 cut(s)	719
PspGI	CCWGG	3 cut(s)	526, 609, 643
PspN4I	GGNNCC	2 cut(s)	94, 510
PstI	CTGCAG	1 cut(s)	843
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	320
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	464
SatI	GCNGC	2 cut(s)	156, 842
Sau3AI	GATC	4 cut(s)	287, 320, 353, 637
ScaI	AGTACT	1 cut(s)	568
SchI	GAGTC	4 cut(s)	550, 657, 749, 771
ScrFI	CCNGG	3 cut(s)	528, 611, 645
SetI	ASST	8 cut(s)	145, 190, 242, 429, 486, 656, 795, 846
SfaNI	GCATC	1 cut(s)	640
SfcI	CTRYAG	1 cut(s)	839
SfoI	GGCGCC	1 cut(s)	94
SmlI	CTYRAG	2 cut(s)	159, 558
SmoI	CTYRAG	2 cut(s)	159, 558
Sse9I	AATT	3 cut(s)	256, 274, 785
SsiI	CCGC	1 cut(s)	723
SspDI	GGCGCC	1 cut(s)	92
SspMI	CTAG	4 cut(s)	216, 237, 351, 593
StyD4I	CCNGG	3 cut(s)	526, 609, 643
StyI	CCWWGG	3 cut(s)	184, 194, 815
TaaI	ACNGT	2 cut(s)	80, 716
TaqI	TCGA	1 cut(s)	128
TasI	AATT	3 cut(s)	256, 274, 785
TatI	WGTACW	1 cut(s)	566
TfiI	GAWTC	2 cut(s)	101, 606
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	432
TseI	GCWGC	2 cut(s)	155, 841
Tsp45I	GTSAC	1 cut(s)	432
TspDTI	ATGAA	5 cut(s)	45, 129, 365, 440, 450
TspRI	CASTG	1 cut(s)	363
XapI	RAATTY	1 cut(s)	785
XceI	RCATGY	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	4 cut(s)	216, 237, 351, 593
ZrmI	AGTACT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.