Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001622

Physical Location & Seq

Genomic Coordinates Reverse (-)

81319762 .. 81322574

Gene Structure 2813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036497

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAAGATGTTCATGATGATGTGGGTGGTGAACTTCGTGGTAGAGAATTGGCTAGCTTGGATGAAGTAGATGATACCATTGATGCTCAAGCAAGTAGAGCAGAAGACACCCAAGGTATTCATTGGGATACACTTAGCATTACTAGAGAGAAATACCGGCAAACTAGGTTAGAACAATACAAGAATTATGAAAACATCCCTAATTCCGGAGAAGGGACAGAGAAGGACTGCAACATTACAGAAAAAGGATCTTTATATTATGAGTTTCAATGCAACACAAGATCAGTGAAACCAACTATCCTTCATTTTCAGGTTTGCGAAGCATCTGAGGTTCTAAATGTTTCAGGACATGTCACACCATCAGAGAACAGACGAGTGCTTATTCAGCAGTTGCAAACCTCTGGTATTCCTGAAGATTCCCTATTACTTTTTCCTTTGGAAGAACAAATGAATTATATAATCTTTGACTTTGGTGCAGCTCACTTTACAGCCTCAAGTAATGATTGTGGAGTCAGAGACTTTGACATGGAGACATTTCAGCTTTCTAAGCATTTCCGTTTTCCTTGGCCAGTGAATACGGTGACGCCTTTATGTGGACACTTCGATTTCTCGTTTGCATCAGCGTGGCATCCTGATGGTGTCACCTTTGCTACTGGGAACCAGGACAAAACCTGTCGGGTTTGGGATGTTCGAAACCTATCCAAGTCAGTTGCTGTTTTAAAGGGAAACCTTGGAGCTATTCGGTCAATCCGTTATACTTCTGATGGTCAGTACATGATGATGGCAGAGCCAGCAGACTTTGTGCATGTCTATGATGTGAAAAGTGGGTACGAGAAGGAGCAGGAAATCGATTTCTTTGGTGAGATATCTGGCATATCATTCAGTCCAGACACAGAGTCGCTTTTCATTGGAGTATGGGATCGTACATATGGTGGTCTTCTCGAGTATGGAAGACAAAAGCGTGTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2415 WD40

Protein Analysis

324

Amino Acids

36.7

Weight (kDa)

4.77

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	151 - 309	5.8e-11	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	159 - 308	1.5e-08	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	162 - 307	5.3e-15	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	162 - 297	1.1e-08	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	207 - 276	3.6e-11	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55680 AT3G13340 AT3G13340 AT3G13340
fragaria_vesca	FvH4_3g41630 FvH4_3g41640 FvH4_3g41650
malus_domestica	MD03G1042700.v1.1 MD03G1216600.v1.1 MD05G1255200.v1.1 MD11G1044000.v1.1 MD11G1045800.v1.1
prunus_persica	Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1
pyrus_communis	pycom03g03290 pycom11g03710
rosa_chinensis	RchiOBHm_Chr5g0074671 RchiOBHm_Chr5g0074681 RchiOBHm_Chr5g0074701 RchiOBHm_Chr5g0074741
rosa_laevigata	RLG00000036497
rosa_multiflora	Rmu_sc0000909.1_g000023 Rmu_sc0000909.1_g000027 Rmu_sc0008028.1_g000001 Rmu_sc0019386.1_g000002 Rmu_sc0019386.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006840 Rroxscaffold_1G00006860 Rroxscaffold_1G00006870
rosa_rugosa	Rorug05G0433500 Rorug05G0433600
rosa_samantha	Rh5AG490700 Rh5AG490800 Rh5AG491100 Rh5BG511800 Rh5BG512000 Rh5BG512300 Rh5BG512400 Rh5BG512500 Rh5CG535600 Rh5CG535700 Rh5CG536000 Rh5CG536100 Rh5DG524200 Rh5DG524500
rosa_wichuraiana	Rw5G045450 Rw5G045460 Rw5G045490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	206
AclWI	GGATC	2 cut(s)	256, 927
AcoI	YGGCCR	1 cut(s)	566
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	584
AfaI	GTAC	3 cut(s)	773, 830, 925
AfiI	CCNNNNNNNGG	3 cut(s)	206, 213, 593
AflIII	ACRYGT	1 cut(s)	349
AgsI	TTSAA	1 cut(s)	269
AhdI	GACNNNNNGTC	1 cut(s)	895
AjnI	CCWGG	1 cut(s)	660
AluBI	AGCT	4 cut(s)	57, 479, 541, 737
AluI	AGCT	4 cut(s)	57, 479, 541, 737
Alw26I	GTCTC	2 cut(s)	510, 524
AlwI	GGATC	2 cut(s)	256, 927
AlwNI	CAGNNNCTG	1 cut(s)	713
Ama87I	CYCGRG	1 cut(s)	941
Aor13HI	TCCGGA	1 cut(s)	206
AoxI	GGCC	1 cut(s)	566
ApeKI	GCWGC	1 cut(s)	476
Asp700I	GAANNNNTTC	1 cut(s)	9
AsuHPI	GGTGA	4 cut(s)	41, 592, 634, 872
AsuII	TTCGAA	1 cut(s)	691
AsuNHI	GCTAGC	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	941
BalI	TGGCCA	1 cut(s)	568
BbsI	GAAGAC	3 cut(s)	111, 929, 958
BbvI	GCAGC	1 cut(s)	488
BccI	CCATC	4 cut(s)	367, 629, 758, 775
BciT130I	CCWGG	1 cut(s)	662
BciVI	GTATCC	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	510, 524
BfaI	CTAG	3 cut(s)	54, 144, 165
BfuI	GTATCC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	1 cut(s)	662
BmeRI	GACNNNNNGTC	1 cut(s)	895
BmeT110I	CYCGRG	1 cut(s)	941
BmiI	GGNNCC	1 cut(s)	659
BmrFI	CCNGG	1 cut(s)	662
BmrI	ACTGGG	1 cut(s)	663
BmsI	GCATC	4 cut(s)	73, 332, 626, 637
BmtI	GCTAGC	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	663
BpiI	GAAGAC	3 cut(s)	111, 929, 958
Bpu14I	TTCGAA	1 cut(s)	691
BpuEI	CTTGAG	2 cut(s)	72, 478
Bsa29I	ATCGAT	1 cut(s)	849
BsaHI	GRCGYC	1 cut(s)	584
BsaJI	CCNNGG	3 cut(s)	112, 563, 730
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 213, 593
Bse118I	RCCGGY	1 cut(s)	156
Bse1I	ACTGG	2 cut(s)	569, 658
BseAI	TCCGGA	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	662
BseCI	ATCGAT	1 cut(s)	849
BseDI	CCNNGG	3 cut(s)	112, 563, 730
BseGI	GGATG	4 cut(s)	67, 195, 628, 691
BseLI	CCNNNNNNNGG	3 cut(s)	206, 213, 593
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	569, 658
BseXI	GCAGC	1 cut(s)	488
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	568
BshVI	ATCGAT	1 cut(s)	849
BsiHKCI	CYCGRG	1 cut(s)	941
BsiSI	CCGG	2 cut(s)	157, 207
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	3 cut(s)	206, 213, 593
BsmAI	GTCTC	2 cut(s)	510, 524
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	568
BsoBI	CYCGRG	1 cut(s)	941
Bsp119I	TTCGAA	1 cut(s)	691
Bsp13I	TCCGGA	1 cut(s)	206
Bsp143I	GATC	3 cut(s)	248, 281, 919
BspANI	GGCC	1 cut(s)	568
BspCNI	CTCAG	1 cut(s)	319
BspDI	ATCGAT	1 cut(s)	849
BspEI	TCCGGA	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	659
BspOI	GCTAGC	1 cut(s)	57
BspPI	GGATC	2 cut(s)	256, 927
BspT104I	TTCGAA	1 cut(s)	691
BsrFI	RCCGGY	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	569, 658
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	3 cut(s)	112, 563, 730
BssMI	GATC	3 cut(s)	248, 281, 919
BssNI	GRCGYC	1 cut(s)	584
BssT1I	CCWWGG	3 cut(s)	112, 563, 730
Bst2UI	CCWGG	1 cut(s)	662
Bst4CI	ACNGT	1 cut(s)	580
BstACI	GRCGYC	1 cut(s)	584
BstBI	TTCGAA	1 cut(s)	691
BstC8I	GCNNGC	2 cut(s)	55, 792
BstDEI	CTNAG	3 cut(s)	134, 327, 546
BstF5I	GGATG	4 cut(s)	67, 195, 628, 691
BstKTI	GATC	3 cut(s)	251, 284, 922
BstMAI	GTCTC	2 cut(s)	510, 524
BstMBI	GATC	3 cut(s)	248, 281, 919
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 385, 547, 791
BstNI	CCWGG	1 cut(s)	662
BstNSI	RCATGY	2 cut(s)	353, 809
BstSCI	CCNGG	1 cut(s)	660
BstV1I	GCAGC	1 cut(s)	488
BstV2I	GAAGAC	3 cut(s)	111, 929, 958
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
Bsu15I	ATCGAT	1 cut(s)	849
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	568
BsuTUI	ATCGAT	1 cut(s)	849
BtsCI	GGATG	4 cut(s)	67, 195, 628, 691
BtsIMutI	CAGTG	2 cut(s)	291, 576
Cac8I	GCNNGC	2 cut(s)	55, 792
CaiI	CAGNNNCTG	1 cut(s)	713
CciI	TCATGA	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	156
ClaI	ATCGAT	1 cut(s)	849
CseI	GACGC	1 cut(s)	592
Csp6I	GTAC	3 cut(s)	772, 829, 924
CviAII	CATG	5 cut(s)	14, 350, 526, 775, 806
CviJI	RGCY	8 cut(s)	53, 57, 479, 491, 541, 568, 737, 790
CviKI_1	RGCY	8 cut(s)	53, 57, 479, 491, 541, 568, 737, 790
CviQI	GTAC	3 cut(s)	772, 829, 924
DdeI	CTNAG	3 cut(s)	134, 327, 546
DpnI	GATC	3 cut(s)	250, 283, 921
DpnII	GATC	3 cut(s)	248, 281, 919
DraI	TTTAAA	1 cut(s)	720
DriI	GACNNNNNGTC	1 cut(s)	895
EaeI	YGGCCR	1 cut(s)	566
Eam1105I	GACNNNNNGTC	1 cut(s)	895
Eco130I	CCWWGG	3 cut(s)	112, 563, 730
Eco32I	GATATC	1 cut(s)	867
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	941
EcoRII	CCWGG	1 cut(s)	660
EcoRV	GATATC	1 cut(s)	867
EcoT14I	CCWWGG	3 cut(s)	112, 563, 730
ErhI	CCWWGG	3 cut(s)	112, 563, 730
FaeI	CATG	5 cut(s)	17, 353, 529, 778, 809
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	5 cut(s)	13, 349, 525, 774, 805
FauNDI	CATATG	1 cut(s)	928
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	4 cut(s)	74, 182, 615, 698
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	3 cut(s)	54, 144, 165
GluI	GCNGC	1 cut(s)	477
HaeIII	GGCC	1 cut(s)	568
HapII	CCGG	2 cut(s)	157, 207
HgaI	GACGC	1 cut(s)	592
Hin1I	GRCGYC	1 cut(s)	584
Hin1II	CATG	5 cut(s)	17, 353, 529, 778, 809
HinfI	GANTC	3 cut(s)	416, 510, 896
HpaII	CCGG	2 cut(s)	157, 207
HphI	GGTGA	4 cut(s)	41, 592, 634, 872
Hpy166II	GTNNAC	2 cut(s)	32, 596
Hpy188I	TCNGA	4 cut(s)	328, 364, 515, 763
Hpy188III	TCNNGA	7 cut(s)	14, 207, 345, 410, 632, 887, 941
Hpy8I	GTNNAC	2 cut(s)	32, 596
HpyAV	CCTTC	4 cut(s)	206, 217, 311, 829
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4V	TGCA	6 cut(s)	231, 273, 394, 476, 617, 805
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 385, 547, 791
HpyF3I	CTNAG	3 cut(s)	134, 327, 546
Hsp92I	GRCGYC	1 cut(s)	584
Hsp92II	CATG	5 cut(s)	17, 353, 529, 778, 809
Kpn2I	TCCGGA	1 cut(s)	206
Kzo9I	GATC	3 cut(s)	248, 281, 919
LmnI	GCTCC	2 cut(s)	734, 838
Lsp1109I	GCAGC	1 cut(s)	488
LweI	GCATC	4 cut(s)	73, 332, 626, 637
MaeI	CTAG	3 cut(s)	54, 144, 165
MaeIII	GTNAC	3 cut(s)	352, 580, 640
MalI	GATC	3 cut(s)	250, 283, 921
MboI	GATC	3 cut(s)	248, 281, 919
MboII	GAAGA	6 cut(s)	17, 116, 425, 452, 929, 963
MflI	RGATCY	1 cut(s)	248
MlsI	TGGCCA	1 cut(s)	568
MluCI	AATT	4 cut(s)	47, 184, 202, 451
MluNI	TGGCCA	1 cut(s)	568
MlyI	GAGTC	2 cut(s)	519, 905
MnlI	CCTC	3 cut(s)	322, 409, 502
Mox20I	TGGCCA	1 cut(s)	568
MroI	TCCGGA	1 cut(s)	206
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	568
MseI	TTAA	2 cut(s)	719, 970
MslI	CAYNNNNRTG	5 cut(s)	18, 622, 633, 779, 810
Msp20I	TGGCCA	1 cut(s)	568
MspI	CCGG	2 cut(s)	157, 207
MspR9I	CCNGG	1 cut(s)	662
MvaI	CCWGG	1 cut(s)	662
MwoI	GCNNNNNNNGC	4 cut(s)	98, 385, 547, 791
NdeI	CATATG	1 cut(s)	928
NdeII	GATC	3 cut(s)	248, 281, 919
NheI	GCTAGC	1 cut(s)	53
NlaIII	CATG	5 cut(s)	17, 353, 529, 778, 809
NlaIV	GGNNCC	1 cut(s)	659
NmuCI	GTSAC	3 cut(s)	352, 580, 640
NspI	RCATGY	2 cut(s)	353, 809
NspV	TTCGAA	1 cut(s)	691
PaeR7I	CTCGAG	1 cut(s)	941
PagI	TCATGA	1 cut(s)	13
PciI	ACATGT	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	748
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	416
PkrI	GCNGC	1 cut(s)	478
PleI	GAGTC	2 cut(s)	518, 904
PpsI	GAGTC	2 cut(s)	518, 904
PscI	ACATGT	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	660
PspN4I	GGNNCC	1 cut(s)	659
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	1 cut(s)	248
RsaI	GTAC	3 cut(s)	773, 830, 925
RsaNI	GTAC	3 cut(s)	772, 829, 924
RseI	CAYNNNNRTG	5 cut(s)	18, 622, 633, 779, 810
SaqAI	TTAA	2 cut(s)	719, 970
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	3 cut(s)	248, 281, 919
SchI	GAGTC	2 cut(s)	519, 905
ScrFI	CCNGG	1 cut(s)	662
SfaNI	GCATC	4 cut(s)	73, 332, 626, 637
Sfr274I	CTCGAG	1 cut(s)	941
SfuI	TTCGAA	1 cut(s)	691
SlaI	CTCGAG	1 cut(s)	941
SmiMI	CAYNNNNRTG	5 cut(s)	18, 622, 633, 779, 810
SmlI	CTYRAG	3 cut(s)	87, 493, 941
SmoI	CTYRAG	3 cut(s)	87, 493, 941
Sse9I	AATT	4 cut(s)	47, 184, 202, 451
SspMI	CTAG	3 cut(s)	54, 144, 165
StyD4I	CCNGG	1 cut(s)	660
StyI	CCWWGG	3 cut(s)	112, 563, 730
TaaI	ACNGT	1 cut(s)	580
TaqI	TCGA	4 cut(s)	603, 691, 849, 942
TaqII	GACCGA	1 cut(s)	732
TasI	AATT	4 cut(s)	47, 184, 202, 451
TatI	WGTACW	1 cut(s)	771
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	2 cut(s)	719, 970
Tru9I	TTAA	2 cut(s)	719, 970
TscAI	CASTG	2 cut(s)	291, 576
TseFI	GTSAC	3 cut(s)	352, 580, 640
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	3 cut(s)	352, 580, 640
TspDTI	ATGAA	6 cut(s)	78, 110, 204, 293, 464, 895
TspGWI	ACGGA	2 cut(s)	545, 740
TspRI	CASTG	2 cut(s)	291, 576
XceI	RCATGY	2 cut(s)	353, 809
XhoI	CTCGAG	1 cut(s)	941
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	3 cut(s)	54, 144, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.