Rh5BG512300

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001622
Physical Location & Seq
Reverse (-)
81343742 .. 81346160
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG512300.1

Sequence Viewer

Length: 672 bp
ATGGCTGGCTCGAAGTCTGATGCTCATGAATCGGACTACAGGAATAGTGAAGTAGATGATAGTATGATACCACTGATGTTCAAGCAAGTAGAGGAGAAGACTTCCAAGTTGCGTAACTTGGTCTGGGCTACATCAAAGCATGATGTCCTACCTTATGTCACATTTTTCTGTCATTCATTGGTCTTCATTAAGTTGCACCACATCTGCGAAACATCCCGGAAGTCTCTTGGAGGGATTGACACAGACAGACAGAGTAAAGTTAGTAGTCTTGCAGTGAAAGATAAGTTGCTAGTTTCTGGAGGATTCAAGGGAGAACTTGTTTGCAAGCATCTTGATCAACCTGGAGTTAGCTTTTGTTCGAGGACAGCTGGTGATGATAATGCCGTTACAAATGCTGTTGAGATTTATGACAATCCCAGTGGTGCAGTTCACTTTACAGCCTCAAGTAATGATTGTGGAGTCAGAGACTTTGACATGGAGGCATTTCAGCTTTCTAACCATTTCCATTTTCCTTGGCCAGTGAATCATACTTCTCTGAGTCCCAATGGTAAACTTCTTGTGGTAACGCTGACGCCTTTATGTGGACACCTGGATTCCTCATTTGCATCAGCGTGGCATCCTGATGGTGTCACCTTTGCTACTGGGAACCAGAACAAAACCTGTCGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2415 WD40

Protein Analysis

223

Amino Acids

24.53

Weight (kDa)

6.29

Isoelectric Point (pI)

25.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 515
AcyI GRCGYC 1 cut(s) 572
AfiI CCNNNNNNNGG 1 cut(s) 581
AgsI TTSAA 2 cut(s) 82, 307
AjnI CCWGG 2 cut(s) 340, 588
AluBI AGCT 3 cut(s) 351, 368, 490
AluI AGCT 3 cut(s) 351, 368, 490
Alw26I GTCTC 2 cut(s) 228, 459
AoxI GGCC 1 cut(s) 515
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 2 cut(s) 383, 622
BalI TGGCCA 1 cut(s) 517
BbsI GAAGAC 2 cut(s) 104, 175
BccI CCATC 1 cut(s) 617
BceAI ACGGC 1 cut(s) 368
BciT130I CCWGG 2 cut(s) 342, 590
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 228, 459
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 37
Bme1390I CCNGG 3 cut(s) 217, 342, 590
BmiI GGNNCC 1 cut(s) 647
BmrFI CCNGG 3 cut(s) 217, 342, 590
BmrI ACTGGG 2 cut(s) 411, 651
BmsI GCATC 4 cut(s) 10, 337, 614, 625
BmuI ACTGGG 2 cut(s) 411, 651
BpiI GAAGAC 2 cut(s) 104, 175
BpmI CTGGAG 2 cut(s) 318, 363
BpuEI CTTGAG 1 cut(s) 427
BpuMI CCSGG 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 512
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse1I ACTGG 3 cut(s) 417, 518, 646
BseBI CCWGG 2 cut(s) 342, 590
BseDI CCNNGG 1 cut(s) 512
BseGI GGATG 2 cut(s) 212, 616
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 3 cut(s) 417, 518, 646
BseRI GAGGAG 1 cut(s) 107
BsgI GTGCAG 1 cut(s) 444
BshFI GGCC 1 cut(s) 517
BsiSI CCGG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 525
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 2 cut(s) 228, 459
BsmFI GGGAC 1 cut(s) 525
BsnI GGCC 1 cut(s) 517
Bsp143I GATC 1 cut(s) 334
BspANI GGCC 1 cut(s) 517
BspCNI CTCAG 1 cut(s) 528
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 647
BsrI ACTGG 3 cut(s) 417, 518, 646
BssECI CCNNGG 1 cut(s) 512
BssMI GATC 1 cut(s) 334
BssNI GRCGYC 1 cut(s) 572
BssT1I CCWWGG 1 cut(s) 512
Bst2UI CCWGG 2 cut(s) 342, 590
BstACI GRCGYC 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 7, 326
BstDEI CTNAG 1 cut(s) 536
BstF5I GGATG 2 cut(s) 212, 616
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 2 cut(s) 228, 459
BstMBI GATC 1 cut(s) 334
BstNI CCWGG 2 cut(s) 342, 590
BstSCI CCNGG 3 cut(s) 215, 340, 588
BstSFI CTRYAG 1 cut(s) 37
BstV2I GAAGAC 2 cut(s) 104, 175
BsuRI GGCC 1 cut(s) 517
BtsCI GGATG 2 cut(s) 212, 616
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 4 cut(s) 71, 279, 424, 525
Cac8I GCNNGC 2 cut(s) 7, 326
CciI TCATGA 1 cut(s) 25
CseI GACGC 1 cut(s) 580
CspCI CAANNNNNGTGG 2 cut(s) 400, 435
CviAII CATG 3 cut(s) 26, 140, 475
CviJI RGCY 8 cut(s) 5, 9, 128, 351, 368, 440, 490, 517
CviKI_1 RGCY 8 cut(s) 5, 9, 128, 351, 368, 440, 490, 517
DdeI CTNAG 1 cut(s) 536
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 512
EcoRII CCWGG 2 cut(s) 340, 588
EcoT14I CCWWGG 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 512
FaeI CATG 3 cut(s) 29, 143, 478
FaiI YATR 8 cut(s) 27, 65, 141, 156, 408, 476, 528, 580
FaqI GGGAC 1 cut(s) 525
FatI CATG 3 cut(s) 25, 139, 474
FbaI TGATCA 1 cut(s) 334
FokI GGATG 2 cut(s) 199, 603
FspBI CTAG 1 cut(s) 290
GsuI CTGGAG 2 cut(s) 318, 363
HaeIII GGCC 1 cut(s) 517
HapII CCGG 1 cut(s) 217
HgaI GACGC 1 cut(s) 580
Hin1I GRCGYC 1 cut(s) 572
Hin1II CATG 3 cut(s) 29, 143, 478
HinfI GANTC 6 cut(s) 29, 303, 459, 523, 538, 593
HpaII CCGG 1 cut(s) 217
HphI GGTGA 2 cut(s) 383, 622
Hpy166II GTNNAC 3 cut(s) 430, 551, 584
Hpy188I TCNGA 4 cut(s) 19, 34, 464, 537
Hpy188III TCNNGA 4 cut(s) 26, 297, 332, 620
Hpy8I GTNNAC 3 cut(s) 430, 551, 584
HpyCH4V TGCA 5 cut(s) 196, 272, 324, 425, 605
HpyF3I CTNAG 1 cut(s) 536
Hsp92I GRCGYC 1 cut(s) 572
Hsp92II CATG 3 cut(s) 29, 143, 478
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 1 cut(s) 334
LweI GCATC 4 cut(s) 10, 337, 614, 625
MaeI CTAG 1 cut(s) 290
MaeIII GTNAC 5 cut(s) 113, 157, 385, 562, 628
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 2 cut(s) 109, 175
MlsI TGGCCA 1 cut(s) 517
MluNI TGGCCA 1 cut(s) 517
MlyI GAGTC 2 cut(s) 468, 547
MnlI CCTC 7 cut(s) 85, 224, 293, 354, 451, 472, 607
Mox20I TGGCCA 1 cut(s) 517
MscI TGGCCA 1 cut(s) 517
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 2 cut(s) 610, 621
Msp20I TGGCCA 1 cut(s) 517
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 1 cut(s) 217
MspR9I CCNGG 3 cut(s) 217, 342, 590
MvaI CCWGG 2 cut(s) 342, 590
NciI CCSGG 1 cut(s) 217
NdeII GATC 1 cut(s) 334
NlaIII CATG 3 cut(s) 29, 143, 478
NlaIV GGNNCC 1 cut(s) 647
NmuCI GTSAC 2 cut(s) 157, 628
PagI TCATGA 1 cut(s) 25
PfeI GAWTC 4 cut(s) 29, 303, 523, 593
PfoI TCCNGGA 1 cut(s) 215
PleI GAGTC 2 cut(s) 467, 546
PpsI GAGTC 2 cut(s) 467, 546
Psp6I CCWGG 2 cut(s) 340, 588
PspGI CCWGG 2 cut(s) 340, 588
PspN4I GGNNCC 1 cut(s) 647
PvuII CAGCTG 1 cut(s) 368
RseI CAYNNNNRTG 2 cut(s) 610, 621
SaqAI TTAA 1 cut(s) 189
Sau3AI GATC 1 cut(s) 334
SchI GAGTC 2 cut(s) 468, 547
ScrFI CCNGG 3 cut(s) 217, 342, 590
SetI ASST 8 cut(s) 154, 343, 353, 370, 492, 591, 635, 662
SfaNI GCATC 4 cut(s) 10, 337, 614, 625
SfcI CTRYAG 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 610, 621
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 3 cut(s) 215, 340, 588
StyI CCWWGG 1 cut(s) 512
TaqI TCGA 2 cut(s) 11, 359
TfiI GAWTC 4 cut(s) 29, 303, 523, 593
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 4 cut(s) 78, 279, 424, 525
TseFI GTSAC 2 cut(s) 157, 628
Tsp45I GTSAC 2 cut(s) 157, 628
TspDTI ATGAA 3 cut(s) 42, 165, 175
TspRI CASTG 4 cut(s) 78, 279, 424, 525
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.