Rh5AG491100

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001622
Physical Location & Seq
Reverse (-)
83702843 .. 83754967
52125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG491100.1

Sequence Viewer

Length: 761 bp
ATGTTCAGCTTCTCCATTCGTGCTTTGAACCAGTTTGCAAGAGAATCGGCCCAGGCCTCGGCGTTTGGAGTGACGGCTGGCGCGGTCACTGAGGAGTATAACAAAAGTTGTGGCATTGTTGATGAAATGGAAGGTGTTCATGATGATGTGGGTGGCGAACTTCGTGATAGAGAATTGGCTAGCTTGGAGTCTGATGCTCATGCAAGTAGAGGAGAAGACATCCAAGGTATTCCTTGGGATAGACTTAGCATTACTAGAGAGAAATACCGGCAAACTAGGTTAGAACAATACAAGAATTATGAAAACATCCCTAATTCCGGAGAAGGGACAGGGAAGGACTGCAACATTACAGAAAAAGGATCTTTATATTATGAGTTTCAATGCAACACAAGATCAGTGAAACCAACTATCCTTCATTTTCAGTTGCGTAACTTGGTCTGGGCTACATCAAAGCATGATGTCTACCTTCTGTCACATTTTTCTGTCATTCATTGGTCTTCATTAAGTTGCGAAGCATCTGGGGTTCTAAATGTTTCAGGACATGTCACACCATCAGAGAAACATCCCGGAAGTCTCTTGGAGGGATTTACACAGACTAAAGTTAGTAGTCTTGCAGTGAAAGATAAGTTGCTAGTTTCTGGAGGATTCAAGGGAGAACTTTTTTGCAAGCATCTTGATCAACCTGGAGTTAGCTTTTGTTCGAGGACAACTGGTGATGATAATGCCGTTACAAATGCTGTTGAGATTTATGACAATCCCAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2415 WD40

Protein Analysis

253

Amino Acids

27.98

Weight (kDa)

5.48

Isoelectric Point (pI)

20.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 462
AccII CGCG 1 cut(s) 83
AccIII TCCGGA 1 cut(s) 317
AciI CCGC 1 cut(s) 83
AclWI GGATC 1 cut(s) 367
AfiI CCNNNNNNNGG 3 cut(s) 58, 317, 324
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 3 cut(s) 28, 380, 649
AjnI CCWGG 2 cut(s) 51, 682
AluBI AGCT 3 cut(s) 9, 183, 693
AluI AGCT 3 cut(s) 9, 183, 693
Alw26I GTCTC 1 cut(s) 578
AlwI GGATC 1 cut(s) 367
Aor13HI TCCGGA 1 cut(s) 317
AoxI GGCC 2 cut(s) 48, 54
Asp700I GAANNNNTTC 1 cut(s) 135
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 49
AsuC2I CCSGG 1 cut(s) 567
AsuHPI GGTGA 1 cut(s) 725
AsuNHI GCTAGC 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 222, 489
BccI CCATC 1 cut(s) 559
BceAI ACGGC 2 cut(s) 90, 710
BcgI CGANNNNNNTGC 2 cut(s) 27, 61
BciT130I CCWGG 2 cut(s) 53, 684
BclI TGATCA 1 cut(s) 676
BcnI CCSGG 1 cut(s) 567
BcoDI GTCTC 1 cut(s) 578
BfaI CTAG 4 cut(s) 180, 255, 276, 632
Bme1390I CCNGG 3 cut(s) 53, 567, 684
BmgT120I GGNCC 1 cut(s) 49
BmrFI CCNGG 3 cut(s) 53, 567, 684
BmsI GCATC 3 cut(s) 184, 524, 679
BmtI GCTAGC 1 cut(s) 183
BpiI GAAGAC 2 cut(s) 222, 489
BpmI CTGGAG 2 cut(s) 660, 705
BpuMI CCSGG 1 cut(s) 567
BsaJI CCNNGG 4 cut(s) 51, 57, 223, 233
BsaWI WCCGGW 1 cut(s) 317
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 317, 324
Bse118I RCCGGY 1 cut(s) 267
Bse1I ACTGG 2 cut(s) 31, 715
BseAI TCCGGA 1 cut(s) 317
BseBI CCWGG 2 cut(s) 53, 684
BseDI CCNNGG 4 cut(s) 51, 57, 223, 233
BseGI GGATG 3 cut(s) 219, 306, 562
BseLI CCNNNNNNNGG 3 cut(s) 58, 317, 324
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 2 cut(s) 31, 715
BseRI GAGGAG 2 cut(s) 107, 225
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 50, 56
BsiSI CCGG 3 cut(s) 268, 318, 567
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 3 cut(s) 58, 317, 324
BsmAI GTCTC 1 cut(s) 578
BsmFI GGGAC 1 cut(s) 340
BsnI GGCC 2 cut(s) 50, 56
Bsp13I TCCGGA 1 cut(s) 317
Bsp143I GATC 3 cut(s) 359, 392, 676
BspACI CCGC 1 cut(s) 83
BspANI GGCC 2 cut(s) 50, 56
BspCNI CTCAG 1 cut(s) 82
BspEI TCCGGA 1 cut(s) 317
BspFNI CGCG 1 cut(s) 83
BspHI TCATGA 1 cut(s) 139
BspOI GCTAGC 1 cut(s) 183
BspPI GGATC 1 cut(s) 367
BsrFI RCCGGY 1 cut(s) 267
BsrI ACTGG 2 cut(s) 31, 715
BssAI RCCGGY 1 cut(s) 267
BssECI CCNNGG 4 cut(s) 51, 57, 223, 233
BssMI GATC 3 cut(s) 359, 392, 676
BssT1I CCWWGG 2 cut(s) 223, 233
Bst2UI CCWGG 2 cut(s) 53, 684
BstC8I GCNNGC 3 cut(s) 79, 181, 668
BstDEI CTNAG 2 cut(s) 90, 245
BstF5I GGATG 3 cut(s) 219, 306, 562
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 3 cut(s) 362, 395, 679
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 3 cut(s) 359, 392, 676
BstNI CCWGG 2 cut(s) 53, 684
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 3 cut(s) 51, 565, 682
BstUI CGCG 1 cut(s) 83
BstV2I GAAGAC 2 cut(s) 222, 489
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BsuRI GGCC 2 cut(s) 50, 56
BtsCI GGATG 3 cut(s) 219, 306, 562
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 3 cut(s) 87, 402, 621
Cac8I GCNNGC 3 cut(s) 79, 181, 668
CciI TCATGA 1 cut(s) 139
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 49
CspCI CAANNNNNGTGG 2 cut(s) 91, 126
CviAII CATG 4 cut(s) 140, 200, 455, 542
CviJI RGCY 8 cut(s) 9, 50, 56, 77, 179, 183, 443, 693
CviKI_1 RGCY 8 cut(s) 9, 50, 56, 77, 179, 183, 443, 693
DdeI CTNAG 2 cut(s) 90, 245
DpnI GATC 3 cut(s) 361, 394, 678
DpnII GATC 3 cut(s) 359, 392, 676
Eco130I CCWWGG 2 cut(s) 223, 233
Eco147I AGGCCT 1 cut(s) 56
EcoRII CCWGG 2 cut(s) 51, 682
EcoT14I CCWWGG 2 cut(s) 223, 233
ErhI CCWWGG 2 cut(s) 223, 233
FaeI CATG 4 cut(s) 143, 203, 458, 545
FaiI YATR 9 cut(s) 99, 141, 201, 300, 367, 372, 456, 543, 750
FaqI GGGAC 1 cut(s) 340
FatI CATG 4 cut(s) 139, 199, 454, 541
FbaI TGATCA 1 cut(s) 676
FblI GTMKAC 1 cut(s) 462
FokI GGATG 3 cut(s) 206, 293, 549
FspBI CTAG 4 cut(s) 180, 255, 276, 632
GlaI GCGC 1 cut(s) 82
GsuI CTGGAG 2 cut(s) 660, 705
HaeIII GGCC 2 cut(s) 50, 56
HapII CCGG 3 cut(s) 268, 318, 567
HhaI GCGC 1 cut(s) 83
Hin1II CATG 4 cut(s) 143, 203, 458, 545
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HinfI GANTC 3 cut(s) 44, 188, 645
HpaII CCGG 3 cut(s) 268, 318, 567
HphI GGTGA 1 cut(s) 725
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 2 cut(s) 193, 556
Hpy188III TCNNGA 6 cut(s) 140, 164, 318, 537, 639, 674
Hpy8I GTNNAC 1 cut(s) 463
HpyAV CCTTC 5 cut(s) 125, 317, 328, 422, 476
HpyCH4V TGCA 6 cut(s) 38, 203, 342, 384, 614, 666
HpyF3I CTNAG 2 cut(s) 90, 245
Hsp92II CATG 4 cut(s) 143, 203, 458, 545
HspAI GCGC 1 cut(s) 81
Kpn2I TCCGGA 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 3 cut(s) 359, 392, 676
LweI GCATC 3 cut(s) 184, 524, 679
MaeI CTAG 4 cut(s) 180, 255, 276, 632
MaeIII GTNAC 6 cut(s) 70, 85, 428, 471, 544, 727
MalI GATC 3 cut(s) 361, 394, 678
MboI GATC 3 cut(s) 359, 392, 676
MboII GAAGA 2 cut(s) 227, 489
MflI RGATCY 1 cut(s) 359
MluCI AATT 3 cut(s) 173, 295, 313
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 6 cut(s) 67, 85, 203, 574, 635, 696
MroI TCCGGA 1 cut(s) 317
MroXI GAANNNNTTC 1 cut(s) 135
MseI TTAA 1 cut(s) 503
MslI CAYNNNNRTG 1 cut(s) 144
MspI CCGG 3 cut(s) 268, 318, 567
MspR9I CCNGG 3 cut(s) 53, 567, 684
MvaI CCWGG 2 cut(s) 53, 684
MvnI CGCG 1 cut(s) 83
NciI CCSGG 1 cut(s) 567
NdeII GATC 3 cut(s) 359, 392, 676
NheI GCTAGC 1 cut(s) 179
NlaIII CATG 4 cut(s) 143, 203, 458, 545
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 4 cut(s) 70, 85, 471, 544
NspI RCATGY 1 cut(s) 545
PagI TCATGA 1 cut(s) 139
PceI AGGCCT 1 cut(s) 56
PciI ACATGT 1 cut(s) 541
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 2 cut(s) 44, 645
PfoI TCCNGGA 1 cut(s) 565
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PscI ACATGT 1 cut(s) 541
Psp6I CCWGG 2 cut(s) 51, 682
PspGI CCWGG 2 cut(s) 51, 682
PspPI GGNCC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 1 cut(s) 503
Sau3AI GATC 3 cut(s) 359, 392, 676
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 3 cut(s) 53, 567, 684
SetI ASST 8 cut(s) 11, 136, 185, 229, 281, 468, 685, 695
SfaNI GCATC 3 cut(s) 184, 524, 679
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 3 cut(s) 173, 295, 313
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 1 cut(s) 83
SspMI CTAG 4 cut(s) 180, 255, 276, 632
StuI AGGCCT 1 cut(s) 56
StyD4I CCNGG 3 cut(s) 51, 565, 682
StyI CCWWGG 2 cut(s) 223, 233
TaqI TCGA 1 cut(s) 701
TasI AATT 3 cut(s) 173, 295, 313
TfiI GAWTC 2 cut(s) 44, 645
Tru1I TTAA 1 cut(s) 503
Tru9I TTAA 1 cut(s) 503
TscAI CASTG 3 cut(s) 94, 402, 621
TseFI GTSAC 4 cut(s) 70, 85, 471, 544
Tsp45I GTSAC 4 cut(s) 70, 85, 471, 544
TspDTI ATGAA 6 cut(s) 128, 138, 315, 404, 479, 489
TspRI CASTG 3 cut(s) 94, 402, 621
XceI RCATGY 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 4 cut(s) 180, 255, 276, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.