Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001622

Physical Location & Seq

Genomic Coordinates Reverse (-)

79483428 .. 79495713

Gene Structure 12286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G045460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGAAGATGTGCATGATGATGTGGGTGGTGAATTTCGTGGTACAGAAATGGCTGGCTCGAAGTCTGATGCTCATGAATCGGACTACAGGTATGTGTATGATACCACTGATGTTCAAGCAAGTAGAGGAGAAGACTTCCAAGGTATTCCTTGGGATAGACTTAGCATTACTAGAGAGAAATACCAGCAAACTAGGTTAGAAAGATACAAGAATTATGAGAACATTCCTAATTCCAGAGAAGGGTCAGGGAAGGACTGCAGCATTACAAAAAAAAGGTCTTTATATTATGAGTTTCAATGCAACACAAGATCAGTGAAGCCAACTGTTCATCATTTTCAGTTGCGTAACTTGGTCTGGGCTACATCAAAGCATGATGTCTACTTTATGTCACATTTTTCTGTCATTCATAAACATCCTGGAAGTCTCTTGGAAGGATTTACACAGTCTCAAGTTAGTAGTCTTGCAGTGAAAGATAAGTTGCTAGTTGCCGGAGGATTCCAAGGAGAACTTATTTTCAAGCATCTTGATCAACCTGGAGTTAGCTTTTGTTCGAGGACAACTGATGATCATAATGCCATTACAAATGCTATTGAGATTTATGACAATCCCAGTGGTGCAGCTCACTTTACATCCTCAAGTAATGATTGTGGAGTCAGAGACTTTGATATGGAGACATTTCAGCTTTCTAAGCATTTCCGTTTTCCTTGGCCAGCGAATCATACTTCTCTGAGTCCTGATGGTAAACTTTTTGTGATGACGGTGACACCTTTATGTGGACACTTGGATTTCTCGTTTGCATCAGCGTGGCATCCTGATGGTGTCACCTTTGCTACTGGGAAGCAGGACAAAACCTGTCGGGTTTGGGATGTTCGAAACCTATCCAAGTCAGTTGCTGTTTTAAAGGGAAACCTTGGAGCTATTCGGTCAATCCGTTATACTTCTGATGGTCAGTATATGATGATGGCAGAGCCAGCAGCCTTTGTGCATCTCTATGATGTGAAAAGTGGGTACGAGAAGGAGCAGGAAATCGATTTCTTTGGTGAGATATCTGGCATATCATTCAGTCCAGACACAGAGTCGCTTTTCATTGGAGTATGGGATCGTACATATGGTGGTCTTCTCGAGTATGGAAGACAAAAGTGTGTTGCTCAAGGGATCCTGATATTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2415 WD40

Protein Analysis

390

Amino Acids

44.12

Weight (kDa)

5.97

Isoelectric Point (pI)

28.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EML_2	PF23414	209 - 343	6.5e-08	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	254 - 382	7.4e-10	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	258 - 368	2.3e-13	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	259 - 368	1.4e-07	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	267 - 336	5.9e-11	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55680 AT3G13340 AT3G13340 AT3G13340
fragaria_vesca	FvH4_3g41630 FvH4_3g41640 FvH4_3g41650
malus_domestica	MD03G1042700.v1.1 MD03G1216600.v1.1 MD05G1255200.v1.1 MD11G1044000.v1.1 MD11G1045800.v1.1
prunus_persica	Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1 Prupe.6G035100_v2.0.a1
pyrus_communis	pycom03g03290 pycom11g03710
rosa_chinensis	RchiOBHm_Chr5g0074671 RchiOBHm_Chr5g0074681 RchiOBHm_Chr5g0074701 RchiOBHm_Chr5g0074741
rosa_laevigata	RLG00000036497
rosa_multiflora	Rmu_sc0000909.1_g000023 Rmu_sc0000909.1_g000027 Rmu_sc0008028.1_g000001 Rmu_sc0019386.1_g000002 Rmu_sc0019386.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006840 Rroxscaffold_1G00006860 Rroxscaffold_1G00006870
rosa_rugosa	Rorug05G0433500 Rorug05G0433600
rosa_samantha	Rh5AG490700 Rh5AG490800 Rh5AG491100 Rh5BG511800 Rh5BG512000 Rh5BG512300 Rh5BG512400 Rh5BG512500 Rh5CG535600 Rh5CG535700 Rh5CG536000 Rh5CG536100 Rh5DG524200 Rh5DG524500
rosa_wichuraiana	Rw5G045450 Rw5G045460 Rw5G045490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	378
AclWI	GGATC	3 cut(s)	1107, 1150, 1163
AcoI	YGGCCR	1 cut(s)	707
AcsI	RAATTY	1 cut(s)	32
AfaI	GTAC	3 cut(s)	43, 1010, 1105
AfiI	CCNNNNNNNGG	2 cut(s)	240, 773
AgsI	TTSAA	3 cut(s)	116, 296, 517
AhdI	GACNNNNNGTC	1 cut(s)	1075
AjnI	CCWGG	2 cut(s)	415, 532
AluBI	AGCT	4 cut(s)	543, 620, 682, 917
AluI	AGCT	4 cut(s)	543, 620, 682, 917
Alw26I	GTCTC	4 cut(s)	428, 450, 651, 665
AlwI	GGATC	3 cut(s)	1107, 1150, 1163
AlwNI	CAGNNNCTG	1 cut(s)	893
Ama87I	CYCGRG	1 cut(s)	1121
AoxI	GGCC	1 cut(s)	707
ApeKI	GCWGC	3 cut(s)	258, 617, 974
ApoI	RAATTY	1 cut(s)	32
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AsuHPI	GGTGA	4 cut(s)	41, 772, 814, 1052
AsuII	TTCGAA	1 cut(s)	871
AvaI	CYCGRG	1 cut(s)	1121
BalI	TGGCCA	1 cut(s)	709
BamHI	GGATCC	1 cut(s)	1155
BbsI	GAAGAC	3 cut(s)	138, 1109, 1138
BbvI	GCAGC	3 cut(s)	270, 629, 986
BccI	CCATC	4 cut(s)	731, 809, 938, 955
BciT130I	CCWGG	2 cut(s)	417, 534
BclI	TGATCA	2 cut(s)	526, 565
BcoDI	GTCTC	4 cut(s)	428, 450, 651, 665
BfaI	CTAG	3 cut(s)	171, 192, 482
BfmI	CTRYAG	2 cut(s)	85, 256
BisI	GCNGC	3 cut(s)	259, 618, 975
BlsI	GCNGC	3 cut(s)	260, 619, 976
Bme1390I	CCNGG	2 cut(s)	417, 534
BmeRI	GACNNNNNGTC	1 cut(s)	1075
BmeT110I	CYCGRG	1 cut(s)	1121
BmiI	GGNNCC	1 cut(s)	1157
BmrFI	CCNGG	2 cut(s)	417, 534
BmrI	ACTGGG	2 cut(s)	603, 843
BmsI	GCATC	5 cut(s)	58, 529, 806, 817, 994
BmuI	ACTGGG	2 cut(s)	603, 843
BpiI	GAAGAC	3 cut(s)	138, 1109, 1138
BpmI	CTGGAG	1 cut(s)	555
Bpu14I	TTCGAA	1 cut(s)	871
BpuEI	CTTGAG	3 cut(s)	432, 619, 1134
Bsa29I	ATCGAT	1 cut(s)	1029
BsaJI	CCNNGG	5 cut(s)	139, 149, 499, 704, 910
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 773
Bse1I	ACTGG	2 cut(s)	609, 838
BseBI	CCWGG	2 cut(s)	417, 534
BseCI	ATCGAT	1 cut(s)	1029
BseDI	CCNNGG	5 cut(s)	139, 149, 499, 704, 910
BseGI	GGATG	4 cut(s)	412, 629, 808, 871
BseLI	CCNNNNNNNGG	2 cut(s)	240, 773
BseMII	CTCAG	1 cut(s)	719
BseNI	ACTGG	2 cut(s)	609, 838
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	3 cut(s)	270, 629, 986
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	1 cut(s)	709
BshVI	ATCGAT	1 cut(s)	1029
BsiHKCI	CYCGRG	1 cut(s)	1121
BsiSI	CCGG	1 cut(s)	489
BslI	CCNNNNNNNGG	2 cut(s)	240, 773
BsmAI	GTCTC	4 cut(s)	428, 450, 651, 665
BsnI	GGCC	1 cut(s)	709
BsoBI	CYCGRG	1 cut(s)	1121
Bsp119I	TTCGAA	1 cut(s)	871
Bsp143I	GATC	5 cut(s)	308, 526, 565, 1099, 1155
BspANI	GGCC	1 cut(s)	709
BspCNI	CTCAG	1 cut(s)	720
BspDI	ATCGAT	1 cut(s)	1029
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	1157
BspMAI	CTGCAG	1 cut(s)	260
BspPI	GGATC	3 cut(s)	1107, 1150, 1163
BspT104I	TTCGAA	1 cut(s)	871
BsrI	ACTGG	2 cut(s)	609, 838
BssECI	CCNNGG	5 cut(s)	139, 149, 499, 704, 910
BssMI	GATC	5 cut(s)	308, 526, 565, 1099, 1155
BssT1I	CCWWGG	5 cut(s)	139, 149, 499, 704, 910
Bst2UI	CCWGG	2 cut(s)	417, 534
Bst4CI	ACNGT	3 cut(s)	325, 444, 760
BstBI	TTCGAA	1 cut(s)	871
BstC8I	GCNNGC	3 cut(s)	55, 711, 972
BstDEI	CTNAG	3 cut(s)	161, 687, 728
BstF5I	GGATG	4 cut(s)	412, 629, 808, 871
BstKTI	GATC	5 cut(s)	311, 529, 568, 1102, 1158
BstMAI	GTCTC	4 cut(s)	428, 450, 651, 665
BstMBI	GATC	5 cut(s)	308, 526, 565, 1099, 1155
BstMWI	GCNNNNNNNGC	2 cut(s)	688, 971
BstNI	CCWGG	2 cut(s)	417, 534
BstSCI	CCNGG	2 cut(s)	415, 532
BstSFI	CTRYAG	2 cut(s)	85, 256
BstV1I	GCAGC	3 cut(s)	270, 629, 986
BstV2I	GAAGAC	3 cut(s)	138, 1109, 1138
BstX2I	RGATCY	1 cut(s)	1155
BstYI	RGATCY	1 cut(s)	1155
Bsu15I	ATCGAT	1 cut(s)	1029
BsuRI	GGCC	1 cut(s)	709
BsuTUI	ATCGAT	1 cut(s)	1029
BtsCI	GGATG	4 cut(s)	412, 629, 808, 871
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	4 cut(s)	105, 318, 471, 616
Cac8I	GCNNGC	3 cut(s)	55, 711, 972
CaiI	CAGNNNCTG	1 cut(s)	893
CciI	TCATGA	1 cut(s)	73
ClaI	ATCGAT	1 cut(s)	1029
Csp6I	GTAC	3 cut(s)	42, 1009, 1104
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviAII	CATG	3 cut(s)	14, 74, 371
CviQI	GTAC	3 cut(s)	42, 1009, 1104
DdeI	CTNAG	3 cut(s)	161, 687, 728
DpnI	GATC	5 cut(s)	310, 528, 567, 1101, 1157
DpnII	GATC	5 cut(s)	308, 526, 565, 1099, 1155
DraI	TTTAAA	1 cut(s)	900
DriI	GACNNNNNGTC	1 cut(s)	1075
EaeI	YGGCCR	1 cut(s)	707
Eam1105I	GACNNNNNGTC	1 cut(s)	1075
Eco130I	CCWWGG	5 cut(s)	139, 149, 499, 704, 910
Eco32I	GATATC	1 cut(s)	1047
Eco88I	CYCGRG	1 cut(s)	1121
EcoRII	CCWGG	2 cut(s)	415, 532
EcoRV	GATATC	1 cut(s)	1047
EcoT14I	CCWWGG	5 cut(s)	139, 149, 499, 704, 910
ErhI	CCWWGG	5 cut(s)	139, 149, 499, 704, 910
FaeI	CATG	3 cut(s)	17, 77, 374
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FatI	CATG	3 cut(s)	13, 73, 370
FauNDI	CATATG	1 cut(s)	1108
FbaI	TGATCA	2 cut(s)	526, 565
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	259, 618, 975
FokI	GGATG	4 cut(s)	399, 616, 795, 878
Fsp4HI	GCNGC	3 cut(s)	259, 618, 975
FspBI	CTAG	3 cut(s)	171, 192, 482
GluI	GCNGC	3 cut(s)	259, 618, 975
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	709
HapII	CCGG	1 cut(s)	489
Hin1II	CATG	3 cut(s)	17, 77, 374
HinfI	GANTC	6 cut(s)	77, 495, 651, 715, 730, 1076
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	4 cut(s)	41, 772, 814, 1052
Hpy166II	GTNNAC	3 cut(s)	379, 743, 776
Hpy188I	TCNGA	5 cut(s)	67, 82, 656, 729, 943
Hpy188III	TCNNGA	8 cut(s)	74, 234, 524, 734, 812, 1067, 1121, 1159
Hpy8I	GTNNAC	3 cut(s)	379, 743, 776
HpyAV	CCTTC	4 cut(s)	233, 244, 425, 1009
HpyCH4III	ACNGT	3 cut(s)	325, 444, 760
HpyCH4V	TGCA	7 cut(s)	13, 258, 300, 464, 617, 797, 985
HpyF10VI	GCNNNNNNNGC	2 cut(s)	688, 971
HpyF3I	CTNAG	3 cut(s)	161, 687, 728
Hsp92II	CATG	3 cut(s)	17, 77, 374
Ksp22I	TGATCA	2 cut(s)	526, 565
Kzo9I	GATC	5 cut(s)	308, 526, 565, 1099, 1155
LmnI	GCTCC	2 cut(s)	914, 1018
Lsp1109I	GCAGC	3 cut(s)	270, 629, 986
LweI	GCATC	5 cut(s)	58, 529, 806, 817, 994
MaeI	CTAG	3 cut(s)	171, 192, 482
MaeIII	GTNAC	4 cut(s)	344, 387, 760, 820
MalI	GATC	5 cut(s)	310, 528, 567, 1101, 1157
MboI	GATC	5 cut(s)	308, 526, 565, 1099, 1155
MboII	GAAGA	4 cut(s)	17, 143, 1109, 1143
MflI	RGATCY	1 cut(s)	1155
MlsI	TGGCCA	1 cut(s)	709
MluCI	AATT	3 cut(s)	32, 211, 229
MluNI	TGGCCA	1 cut(s)	709
MlyI	GAGTC	3 cut(s)	660, 739, 1085
MnlI	CCTC	4 cut(s)	119, 485, 546, 643
Mox20I	TGGCCA	1 cut(s)	709
MscI	TGGCCA	1 cut(s)	709
MseI	TTAA	2 cut(s)	899, 1167
MslI	CAYNNNNRTG	5 cut(s)	18, 769, 802, 813, 990
Msp20I	TGGCCA	1 cut(s)	709
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	2 cut(s)	417, 534
MvaI	CCWGG	2 cut(s)	417, 534
MwoI	GCNNNNNNNGC	2 cut(s)	688, 971
NdeI	CATATG	1 cut(s)	1108
NdeII	GATC	5 cut(s)	308, 526, 565, 1099, 1155
NlaIII	CATG	3 cut(s)	17, 77, 374
NlaIV	GGNNCC	1 cut(s)	1157
NmuCI	GTSAC	3 cut(s)	387, 760, 820
NspV	TTCGAA	1 cut(s)	871
PaeR7I	CTCGAG	1 cut(s)	1121
PagI	TCATGA	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	928
PfeI	GAWTC	3 cut(s)	77, 495, 715
PfoI	TCCNGGA	1 cut(s)	415
PkrI	GCNGC	3 cut(s)	260, 619, 976
PleI	GAGTC	3 cut(s)	659, 738, 1084
PpsI	GAGTC	3 cut(s)	659, 738, 1084
Psp6I	CCWGG	2 cut(s)	415, 532
PspGI	CCWGG	2 cut(s)	415, 532
PspN4I	GGNNCC	1 cut(s)	1157
PstI	CTGCAG	1 cut(s)	260
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	1155
RsaI	GTAC	3 cut(s)	43, 1010, 1105
RsaNI	GTAC	3 cut(s)	42, 1009, 1104
RseI	CAYNNNNRTG	5 cut(s)	18, 769, 802, 813, 990
SaqAI	TTAA	2 cut(s)	899, 1167
SatI	GCNGC	3 cut(s)	259, 618, 975
Sau3AI	GATC	5 cut(s)	308, 526, 565, 1099, 1155
SchI	GAGTC	3 cut(s)	660, 739, 1085
ScrFI	CCNGG	2 cut(s)	417, 534
SfaNI	GCATC	5 cut(s)	58, 529, 806, 817, 994
SfcI	CTRYAG	2 cut(s)	85, 256
Sfr274I	CTCGAG	1 cut(s)	1121
SfuI	TTCGAA	1 cut(s)	871
SlaI	CTCGAG	1 cut(s)	1121
SmiMI	CAYNNNNRTG	5 cut(s)	18, 769, 802, 813, 990
SmlI	CTYRAG	4 cut(s)	447, 634, 1121, 1149
SmoI	CTYRAG	4 cut(s)	447, 634, 1121, 1149
Sse9I	AATT	3 cut(s)	32, 211, 229
SspMI	CTAG	3 cut(s)	171, 192, 482
StyD4I	CCNGG	2 cut(s)	415, 532
StyI	CCWWGG	5 cut(s)	139, 149, 499, 704, 910
TaaI	ACNGT	3 cut(s)	325, 444, 760
TaqI	TCGA	5 cut(s)	59, 551, 871, 1029, 1122
TaqII	GACCGA	1 cut(s)	912
TasI	AATT	3 cut(s)	32, 211, 229
TfiI	GAWTC	3 cut(s)	77, 495, 715
Tru1I	TTAA	2 cut(s)	899, 1167
Tru9I	TTAA	2 cut(s)	899, 1167
TscAI	CASTG	4 cut(s)	112, 318, 471, 616
TseFI	GTSAC	3 cut(s)	387, 760, 820
TseI	GCWGC	3 cut(s)	258, 617, 974
Tsp45I	GTSAC	3 cut(s)	387, 760, 820
TspDTI	ATGAA	4 cut(s)	90, 317, 395, 1075
TspGWI	ACGGA	2 cut(s)	686, 920
TspRI	CASTG	4 cut(s)	112, 318, 471, 616
XapI	RAATTY	1 cut(s)	32
XhoI	CTCGAG	1 cut(s)	1121
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	3 cut(s)	171, 192, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.