RchiOBHm_Chr5g0074701

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001622
Physical Location & Seq
Reverse (-)
80667970 .. 80673033
5064 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34948

Sequence Viewer

Length: 807 bp
ATGAGCCGAGAGAAAGGAAGGCAGGCTATACATTGGAAATTAAATTGTGGCATTGTTGATGAAATGGAAGATGTTCAAGATGATGTGGGTGGCGAACTTCGTGGTAGAGAATTGGCTAGCTTGGAGTCTGATGCTCATGAATCGGACTATGTGAATAGTGAAGTAGATGATACCACTGATGCTCAAGCAAGTAGAGCAGAAGACACCCAAGGTATTCCTTGGGATAGACTTAGCATTACTAGAGAGAAATACCGGCAAACTAGGTTAGAACAATACAAGAATTATGAAAACATCCCTAATTCCGGAGAAGGGACAGGGAAGGACTGCAACATTTCAGAAAAAGGATCTTTATATTATGAGTTTCAATGCAACACAAGATCAGTGAAACCAACTATCCTTCATTTTCAGTTGCGTAACTTATGTCACATTTTTCTGTCATTCCTGTCTTCATCAAGTTGCGAAGCATCTGAGGTTCTAAATGTTTCAGGACATGTCACACCATCAGAGAAACATCCTGGAAGTCTCTTGGAAGGATTTACACAGACTCAAGTTAGTAGTCTTGCAGTGAAAGATAAGTTGCTAGTTGCCGGAGGATTCCAAGGAGAACTTATTTTCAAGCATCTTGATCAACCTGGAGTTAGCTTTTGTTCGAGGACAACTGATGATGATAATGCCATTACAAATGCTATTGAGATTTATGACAATCCCAGTGGTGCAGCTCACTTTACAGCCTCAAGTAATGATTGTGGAGTCAGAGACTTTGATATGGAGACACTTCAGCTTTCTAAGCATTTCCGTTTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2415 WD40

Protein Analysis

268

Amino Acids

29.93

Weight (kDa)

4.88

Isoelectric Point (pI)

31.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 302
AclWI GGATC 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 761
AfiI CCNNNNNNNGG 2 cut(s) 302, 309
AflIII ACRYGT 1 cut(s) 490
AgsI TTSAA 3 cut(s) 77, 365, 616
AjnI CCWGG 2 cut(s) 514, 631
AluBI AGCT 4 cut(s) 120, 642, 719, 781
AluI AGCT 4 cut(s) 120, 642, 719, 781
Alw26I GTCTC 3 cut(s) 527, 750, 764
AlwI GGATC 1 cut(s) 352
Aor13HI TCCGGA 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 716
Asp700I GAANNNNTTC 1 cut(s) 72
AsuNHI GCTAGC 1 cut(s) 116
BbsI GAAGAC 2 cut(s) 207, 438
BbvI GCAGC 1 cut(s) 728
BccI CCATC 1 cut(s) 508
BciT130I CCWGG 2 cut(s) 516, 633
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 3 cut(s) 527, 750, 764
BfaI CTAG 4 cut(s) 117, 240, 261, 581
BisI GCNGC 1 cut(s) 717
BlsI GCNGC 1 cut(s) 718
Bme1390I CCNGG 2 cut(s) 516, 633
BmrFI CCNGG 2 cut(s) 516, 633
BmrI ACTGGG 1 cut(s) 702
BmsI GCATC 4 cut(s) 121, 169, 473, 628
BmtI GCTAGC 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 702
BpiI GAAGAC 2 cut(s) 207, 438
BpmI CTGGAG 1 cut(s) 654
BpuEI CTTGAG 3 cut(s) 168, 531, 718
BsaJI CCNNGG 3 cut(s) 208, 218, 598
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 309
Bse118I RCCGGY 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 708
BseAI TCCGGA 1 cut(s) 302
BseBI CCWGG 2 cut(s) 516, 633
BseDI CCNNGG 3 cut(s) 208, 218, 598
BseGI GGATG 2 cut(s) 291, 511
BseLI CCNNNNNNNGG 2 cut(s) 302, 309
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 1 cut(s) 708
BseXI GCAGC 1 cut(s) 728
BsgI GTGCAG 1 cut(s) 735
BsiSI CCGG 3 cut(s) 253, 303, 588
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 2 cut(s) 302, 309
BsmAI GTCTC 3 cut(s) 527, 750, 764
BsmFI GGGAC 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 302
Bsp143I GATC 3 cut(s) 344, 377, 625
BspCNI CTCAG 1 cut(s) 460
BspEI TCCGGA 1 cut(s) 302
BspHI TCATGA 1 cut(s) 136
BspOI GCTAGC 1 cut(s) 120
BspPI GGATC 1 cut(s) 352
BsrFI RCCGGY 1 cut(s) 252
BsrI ACTGG 1 cut(s) 708
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 3 cut(s) 208, 218, 598
BssMI GATC 3 cut(s) 344, 377, 625
BssT1I CCWWGG 3 cut(s) 208, 218, 598
Bst2UI CCWGG 2 cut(s) 516, 633
BstC8I GCNNGC 2 cut(s) 24, 118
BstDEI CTNAG 4 cut(s) 230, 468, 786, 804
BstF5I GGATG 2 cut(s) 291, 511
BstKTI GATC 3 cut(s) 347, 380, 628
BstMAI GTCTC 3 cut(s) 527, 750, 764
BstMBI GATC 3 cut(s) 344, 377, 625
BstMWI GCNNNNNNNGC 2 cut(s) 194, 787
BstNI CCWGG 2 cut(s) 516, 633
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 2 cut(s) 514, 631
BstV1I GCAGC 1 cut(s) 728
BstV2I GAAGAC 2 cut(s) 207, 438
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BtsCI GGATG 2 cut(s) 291, 511
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 4 cut(s) 174, 387, 570, 715
Cac8I GCNNGC 2 cut(s) 24, 118
CciI TCATGA 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 252
CspCI CAANNNNNGTGG 2 cut(s) 691, 726
CviAII CATG 2 cut(s) 137, 491
CviJI RGCY 8 cut(s) 6, 26, 116, 120, 642, 719, 731, 781
CviKI_1 RGCY 8 cut(s) 6, 26, 116, 120, 642, 719, 731, 781
DdeI CTNAG 4 cut(s) 230, 468, 786, 804
DpnI GATC 3 cut(s) 346, 379, 627
DpnII GATC 3 cut(s) 344, 377, 625
Eco130I CCWWGG 3 cut(s) 208, 218, 598
Eco57I CTGAAG 1 cut(s) 761
EcoRII CCWGG 2 cut(s) 514, 631
EcoT14I CCWWGG 3 cut(s) 208, 218, 598
ErhI CCWWGG 3 cut(s) 208, 218, 598
FaeI CATG 2 cut(s) 140, 494
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FaqI GGGAC 1 cut(s) 325
FatI CATG 2 cut(s) 136, 490
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 1 cut(s) 717
FokI GGATG 2 cut(s) 278, 498
Fsp4HI GCNGC 1 cut(s) 717
FspBI CTAG 4 cut(s) 117, 240, 261, 581
GluI GCNGC 1 cut(s) 717
GsuI CTGGAG 1 cut(s) 654
HapII CCGG 3 cut(s) 253, 303, 588
Hin1II CATG 2 cut(s) 140, 494
HinfI GANTC 5 cut(s) 125, 140, 544, 594, 750
HpaII CCGG 3 cut(s) 253, 303, 588
Hpy188I TCNGA 6 cut(s) 130, 145, 337, 469, 505, 755
Hpy188III TCNNGA 5 cut(s) 77, 137, 303, 486, 623
HpyAV CCTTC 5 cut(s) 12, 302, 313, 407, 524
HpyCH4V TGCA 4 cut(s) 327, 369, 563, 716
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 787
HpyF3I CTNAG 4 cut(s) 230, 468, 786, 804
Hsp92II CATG 2 cut(s) 140, 494
Kpn2I TCCGGA 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 3 cut(s) 344, 377, 625
Lsp1109I GCAGC 1 cut(s) 728
LweI GCATC 4 cut(s) 121, 169, 473, 628
MaeI CTAG 4 cut(s) 117, 240, 261, 581
MaeIII GTNAC 3 cut(s) 413, 422, 493
MalI GATC 3 cut(s) 346, 379, 627
MboI GATC 3 cut(s) 344, 377, 625
MboII GAAGA 3 cut(s) 80, 212, 438
MflI RGATCY 1 cut(s) 344
MluCI AATT 5 cut(s) 38, 43, 110, 280, 298
MlyI GAGTC 3 cut(s) 134, 538, 759
MnlI CCTC 4 cut(s) 463, 584, 645, 742
MroI TCCGGA 1 cut(s) 302
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 1 cut(s) 41
MspI CCGG 3 cut(s) 253, 303, 588
MspR9I CCNGG 2 cut(s) 516, 633
MvaI CCWGG 2 cut(s) 516, 633
MwoI GCNNNNNNNGC 2 cut(s) 194, 787
NdeII GATC 3 cut(s) 344, 377, 625
NheI GCTAGC 1 cut(s) 116
NlaIII CATG 2 cut(s) 140, 494
NmeAIII GCCGAG 1 cut(s) 32
NmuCI GTSAC 2 cut(s) 422, 493
NspI RCATGY 1 cut(s) 494
PagI TCATGA 1 cut(s) 136
PciI ACATGT 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 140, 594
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 1 cut(s) 718
PleI GAGTC 3 cut(s) 133, 538, 758
PpsI GAGTC 3 cut(s) 133, 538, 758
PscI ACATGT 1 cut(s) 490
Psp6I CCWGG 2 cut(s) 514, 631
PspGI CCWGG 2 cut(s) 514, 631
PsuI RGATCY 1 cut(s) 344
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 717
Sau3AI GATC 3 cut(s) 344, 377, 625
SchI GAGTC 3 cut(s) 134, 538, 759
ScrFI CCNGG 2 cut(s) 516, 633
SetI ASST 8 cut(s) 122, 214, 266, 474, 634, 644, 721, 783
SfaNI GCATC 4 cut(s) 121, 169, 473, 628
SmlI CTYRAG 3 cut(s) 183, 546, 733
SmoI CTYRAG 3 cut(s) 183, 546, 733
Sse9I AATT 5 cut(s) 38, 43, 110, 280, 298
SspMI CTAG 4 cut(s) 117, 240, 261, 581
StyD4I CCNGG 2 cut(s) 514, 631
StyI CCWWGG 3 cut(s) 208, 218, 598
TaqI TCGA 1 cut(s) 650
TasI AATT 5 cut(s) 38, 43, 110, 280, 298
TfiI GAWTC 2 cut(s) 140, 594
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 4 cut(s) 181, 387, 570, 715
TseFI GTSAC 2 cut(s) 422, 493
TseI GCWGC 1 cut(s) 716
Tsp45I GTSAC 2 cut(s) 422, 493
TspDTI ATGAA 5 cut(s) 75, 153, 300, 389, 438
TspGWI ACGGA 1 cut(s) 785
TspRI CASTG 4 cut(s) 181, 387, 570, 715
XceI RCATGY 1 cut(s) 494
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 4 cut(s) 117, 240, 261, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.