Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Reverse (-)

35933867 .. 35935962

Gene Structure 2096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCAGCTGCTATTCGGTCTATGATTGGAAAGGTGGGAAATAGAAGATCAATAACAAACAATGTTACACCTTTTGAAACAAGAACCCTAAATGTCAGCCATAGTCTACAACTGGGTTATTCCTCTCGTCACCCTCGGATTCAAAGGCTGCCAAAGAAATCGAAACCTGACGACCAGTCCATTCCAGATATGTTCTATAATTGTGTTGGTCCTATTCATAACTCCTCCAGAGATTGTCCCAGAGTTGTGATCAATTCACATTTCGCTTTGGAAGAGTTCAGCAAGCAAAAGAATGCTCAACTACAATTCGTAAGAGTGGTGAAGGCATATAACCAGGAGTGTGGTGGTGCTTTCAATCATCTAATTTTAACGTTGGAGGCAATAGATGCTGATAATGTGATCCAGATCTACCAAGCAATAGTGAAGCAGTTTTGGATTGACAAACGTCCATTGCTGCTCCTATTATTTGGTCTCGTTGCCAATAATGGCAATGGGGATTTGATCAAACTTATTGACAACAGGGGTGTACTCGGACTAGGACCAACTGATAATCGACGTTTTGGTCGACGGATAAAGATTCAAAAGACAAAGAGATATACCCTCGAGGAGGAGATAATAAGCACCTTGCACTTCCCTATAAATGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

217

Amino Acids

24.6

Weight (kDa)

9.83

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	81 - 143	1.2e-06	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	561
AbsI	CCTCGAGG	1 cut(s)	602
AccI	GTMKAC	2 cut(s)	106, 565
AclI	AACGTT	1 cut(s)	371
AclWI	GGATC	1 cut(s)	394
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	1 cut(s)	607
AgsI	TTSAA	4 cut(s)	77, 143, 355, 581
AhdI	GACNNNNNGTC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	1 cut(s)	394
Ama87I	CYCGRG	1 cut(s)	602
ApeKI	GCWGC	4 cut(s)	5, 8, 148, 454
AspS9I	GGNCC	2 cut(s)	209, 539
AsuHPI	GGTGA	2 cut(s)	122, 331
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	2 cut(s)	209, 539
BbvI	GCAGC	3 cut(s)	17, 135, 441
BciT130I	CCWGG	1 cut(s)	335
BclI	TGATCA	2 cut(s)	249, 501
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	1 cut(s)	536
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	4 cut(s)	6, 9, 149, 455
BlsI	GCNGC	4 cut(s)	7, 10, 150, 456
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	2 cut(s)	209, 539
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	2 cut(s)	209, 539
BmrFI	CCNGG	1 cut(s)	335
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	122
BoxI	GACNNNNGTC	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	2 cut(s)	117, 175
Bse3DI	GCAATG	2 cut(s)	449, 496
Bse8I	GATNNNNATC	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	134
BseJI	GATNNNNATC	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMI	GCAATG	2 cut(s)	449, 496
BseNI	ACTGG	2 cut(s)	117, 175
BseRI	GAGGAG	3 cut(s)	214, 620, 623
BseXI	GCAGC	3 cut(s)	17, 135, 441
BsiHKCI	CYCGRG	1 cut(s)	602
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	1 cut(s)	602
Bsp143I	GATC	5 cut(s)	47, 249, 399, 405, 501
BspPI	GGATC	1 cut(s)	394
BspTNI	GGTCTC	1 cut(s)	476
BsrDI	GCAATG	2 cut(s)	449, 496
BsrI	ACTGG	2 cut(s)	117, 175
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	5 cut(s)	47, 249, 399, 405, 501
Bst2UI	CCWGG	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	284
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstKTI	GATC	5 cut(s)	50, 252, 402, 408, 504
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	5 cut(s)	47, 249, 399, 405, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	335
BstPAI	GACNNNNGTC	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	17, 135, 441
BstX2I	RGATCY	1 cut(s)	405
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	209, 539
Csp6I	GTAC	1 cut(s)	527
CviJI	RGCY	3 cut(s)	8, 99, 148
CviKI_1	RGCY	3 cut(s)	8, 99, 148
CviQI	GTAC	1 cut(s)	527
DpnI	GATC	5 cut(s)	49, 251, 401, 407, 503
DpnII	GATC	5 cut(s)	47, 249, 399, 405, 501
DrdI	GACNNNNNNGTC	1 cut(s)	561
DriI	GACNNNNNGTC	1 cut(s)	175
DseDI	GACNNNNNNGTC	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	267
Eam1105I	GACNNNNNGTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	2 cut(s)	209, 539
Eco88I	CYCGRG	1 cut(s)	602
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	333
FaiI	YATR	9 cut(s)	23, 102, 191, 198, 219, 328, 330, 597, 638
FaqI	GGGAC	1 cut(s)	222
FbaI	TGATCA	2 cut(s)	249, 501
FblI	GTMKAC	2 cut(s)	106, 565
Fnu4HI	GCNGC	4 cut(s)	6, 9, 149, 455
Fsp4HI	GCNGC	4 cut(s)	6, 9, 149, 455
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	4 cut(s)	6, 9, 149, 455
GsuI	CTGGAG	1 cut(s)	211
HincII	GTYRAC	1 cut(s)	566
HindII	GTYRAC	1 cut(s)	566
HinfI	GANTC	2 cut(s)	139, 577
HphI	GGTGA	2 cut(s)	122, 331
Hpy166II	GTNNAC	3 cut(s)	107, 527, 566
Hpy188I	TCNGA	2 cut(s)	138, 533
Hpy188III	TCNNGA	3 cut(s)	185, 228, 403
Hpy8I	GTNNAC	3 cut(s)	107, 527, 566
Hpy99I	CGWCG	2 cut(s)	558, 570
HpyAV	CCTTC	1 cut(s)	316
HpyCH4IV	ACGT	3 cut(s)	371, 445, 556
HpyCH4V	TGCA	1 cut(s)	628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpySE526I	ACGT	3 cut(s)	371, 445, 556
Ksp22I	TGATCA	2 cut(s)	249, 501
Kzo9I	GATC	5 cut(s)	47, 249, 399, 405, 501
LmnI	GCTCC	1 cut(s)	462
Lsp1109I	GCAGC	3 cut(s)	17, 135, 441
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	3 cut(s)	371, 445, 556
MaeIII	GTNAC	2 cut(s)	64, 128
MalI	GATC	5 cut(s)	49, 251, 401, 407, 503
MboI	GATC	5 cut(s)	47, 249, 399, 405, 501
MboII	GAAGA	2 cut(s)	57, 284
MflI	RGATCY	1 cut(s)	405
MluCI	AATT	4 cut(s)	199, 253, 305, 363
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	7 cut(s)	133, 144, 235, 370, 598, 601, 611
MseI	TTAA	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeII	GATC	5 cut(s)	47, 249, 399, 405, 501
NmuCI	GTSAC	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	602
PcsI	WCGNNNNNNNCGW	1 cut(s)	562
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	139, 577
PkrI	GCNGC	4 cut(s)	7, 10, 150, 456
PshAI	GACNNNNGTC	1 cut(s)	444
Psp1406I	AACGTT	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspPI	GGNCC	2 cut(s)	209, 539
PspXI	VCTCGAGB	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	405
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
SalI	GTCGAC	1 cut(s)	564
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	4 cut(s)	6, 9, 149, 455
Sau3AI	GATC	5 cut(s)	47, 249, 399, 405, 501
Sau96I	GGNCC	2 cut(s)	209, 539
ScrFI	CCNGG	1 cut(s)	335
SetI	ASST	8 cut(s)	10, 36, 73, 169, 374, 448, 559, 626
SfaNI	GCATC	1 cut(s)	376
Sfr274I	CTCGAG	1 cut(s)	602
SinI	GGWCC	2 cut(s)	209, 539
SlaI	CTCGAG	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	4 cut(s)	199, 253, 305, 363
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	1 cut(s)	333
TaiI	ACGT	3 cut(s)	374, 448, 559
TaqI	TCGA	4 cut(s)	161, 553, 565, 603
TaqII	GACCGA	1 cut(s)	6
TasI	AATT	4 cut(s)	199, 253, 305, 363
TatI	WGTACW	1 cut(s)	526
TfiI	GAWTC	2 cut(s)	139, 577
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	4 cut(s)	5, 8, 148, 454
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	206
TspGWI	ACGGA	1 cut(s)	583
VpaK11BI	GGWCC	2 cut(s)	209, 539
XagI	CCTNNNNNAGG	1 cut(s)	605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XhoI	CTCGAG	1 cut(s)	602
XmiI	GTMKAC	2 cut(s)	106, 565
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.