RLG00000036657

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002040
Physical Location & Seq
Reverse (-)
83010236 .. 83011415
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036657

Sequence Viewer

Length: 510 bp
ATGTTATTTCTCAGAGCAAGTCTTATCGCTTACTCCTCCAGATATTGTATTAGGGTTGTGATTAATGCTCATTTCGCTCTGGAAGAGTTCAACAAGCACAAGGTGTTTGGTGGTTGGACGATTCGTTTGCTAACCTTGGAGGCAATTGATCCTGAGAATGTGATCCAGATTTACCAAGCAATAGTTAAGGACATTGCACTGGCAACCCTCCAGTGCAACTCCAATTGTTTGTCGAGTACTTTTAAATGCATTGAGGGGGTGGATGTTTACTTGATTGTCTTCTCTGGTGTTGGGCGAGAGACGTTAAAGATTAGTTGCGCGGGAAGCCATGTTAGACAATCTCGCGAGGACCCAGATGAAGCCCATGACTTGCAGGACCAAACAGTAATCATTAGGATTCGTTGCCCACGTGGGGGTCAGAGAATACAGCGAGGTTCTCCTTCTAGTGGAAAGAAGGACGCTAGGCGTGCCTTGAAAACTGTTCACCTTTGCAGAGAAACAAGAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.04

Weight (kDa)

9.21

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 320, 345
AciI CCGC 1 cut(s) 320
AclWI GGATC 2 cut(s) 143, 157
AcvI CACGTG 1 cut(s) 410
AdeI CACNNNGTG 1 cut(s) 103
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 3 cut(s) 412, 413, 446
AgsI TTSAA 2 cut(s) 91, 475
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 2 cut(s) 143, 157
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
AseI ATTAAT 1 cut(s) 63
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 349, 376
AsuHPI GGTGA 1 cut(s) 476
AvaII GGWCC 2 cut(s) 349, 376
BbrPI CACGTG 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 271
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 2 cut(s) 444, 462
BmcAI AGTACT 1 cut(s) 238
Bme18I GGWCC 2 cut(s) 349, 376
BmgT120I GGNCC 2 cut(s) 349, 376
BmiI GGNNCC 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 271
BpmI CTGGAG 2 cut(s) 22, 194
BsaAI YACGTR 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 3 cut(s) 412, 413, 446
Bse1I ACTGG 2 cut(s) 204, 211
Bse3DI GCAATG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 3 cut(s) 412, 413, 446
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 2 cut(s) 25, 144
BseNI ACTGG 2 cut(s) 204, 211
BseRI GAGGAG 1 cut(s) 25
Bsh1236I CGCG 2 cut(s) 320, 345
BslI CCNNNNNNNGG 3 cut(s) 412, 413, 446
BsmAI GTCTC 1 cut(s) 293
BsmBI CGTCTC 1 cut(s) 293
Bsp143I GATC 2 cut(s) 148, 162
Bsp68I TCGCGA 1 cut(s) 345
BspACI CCGC 1 cut(s) 320
BspCNI CTCAG 2 cut(s) 24, 145
BspFNI CGCG 2 cut(s) 320, 345
BspLI GGNNCC 1 cut(s) 351
BspPI GGATC 2 cut(s) 143, 157
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 2 cut(s) 204, 211
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 2 cut(s) 148, 162
BssT1I CCWWGG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 385, 481
Bst6I CTCTTC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 2 cut(s) 11, 153
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 2 cut(s) 320, 345
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 2 cut(s) 151, 165
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 2 cut(s) 148, 162
BstMWI GCNNNNNNNGC 3 cut(s) 74, 324, 467
BstUI CGCG 2 cut(s) 320, 345
BstV2I GAAGAC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 197, 218
BtuMI TCGCGA 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 468
CfoI GCGC 1 cut(s) 320
Cfr13I GGNCC 2 cut(s) 349, 376
CseI GACGC 1 cut(s) 467
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 329, 365
CviJI RGCY 2 cut(s) 327, 362
CviKI_1 RGCY 2 cut(s) 327, 362
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 2 cut(s) 11, 153
DpnI GATC 2 cut(s) 150, 164
DpnII GATC 2 cut(s) 148, 162
DraI TTTAAA 1 cut(s) 244
DraIII CACNNNGTG 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 135
Eco47I GGWCC 2 cut(s) 349, 376
Eco72I CACGTG 1 cut(s) 410
EcoO109I RGGNCCY 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 135
EcoT22I ATGCAT 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 2 cut(s) 332, 368
FaiI YATR 3 cut(s) 330, 366, 508
FatI CATG 2 cut(s) 328, 364
FauI CCCGC 1 cut(s) 313
FokI GGATG 1 cut(s) 275
FspBI CTAG 2 cut(s) 444, 462
GlaI GCGC 1 cut(s) 319
GsuI CTGGAG 2 cut(s) 22, 194
HgaI GACGC 1 cut(s) 467
HhaI GCGC 1 cut(s) 320
Hin1II CATG 2 cut(s) 332, 368
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HinfI GANTC 2 cut(s) 121, 397
HphI GGTGA 1 cut(s) 476
Hpy166II GTNNAC 2 cut(s) 268, 484
Hpy188I TCNGA 2 cut(s) 14, 420
Hpy188III TCNNGA 5 cut(s) 39, 80, 152, 166, 344
Hpy8I GTNNAC 2 cut(s) 268, 484
HpyAV CCTTC 2 cut(s) 448, 450
HpyCH4III ACNGT 2 cut(s) 385, 481
HpyCH4IV ACGT 2 cut(s) 302, 409
HpyCH4V TGCA 5 cut(s) 197, 216, 249, 373, 492
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 324, 467
HpyF3I CTNAG 2 cut(s) 11, 153
HpySE526I ACGT 2 cut(s) 302, 409
Hsp92II CATG 2 cut(s) 332, 368
HspAI GCGC 1 cut(s) 318
Kzo9I GATC 2 cut(s) 148, 162
LpnPI CCDG 9 cut(s) 52, 65, 165, 179, 185, 224, 270, 359, 366
MaeI CTAG 2 cut(s) 444, 462
MaeII ACGT 2 cut(s) 302, 409
MalI GATC 2 cut(s) 150, 164
MboI GATC 2 cut(s) 148, 162
MboII GAAGA 2 cut(s) 95, 271
MfeI CAATTG 2 cut(s) 144, 223
MluCI AATT 2 cut(s) 144, 223
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 6 cut(s) 46, 133, 218, 247, 340, 425
Mph1103I ATGCAT 1 cut(s) 251
MseI TTAA 4 cut(s) 63, 186, 243, 305
MunI CAATTG 2 cut(s) 144, 223
MvnI CGCG 2 cut(s) 320, 345
MwoI GCNNNNNNNGC 3 cut(s) 74, 324, 467
NdeII GATC 2 cut(s) 148, 162
NlaIII CATG 2 cut(s) 332, 368
NlaIV GGNNCC 1 cut(s) 351
NruI TCGCGA 1 cut(s) 345
NsiI ATGCAT 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 406
PfeI GAWTC 2 cut(s) 121, 397
PmaCI CACGTG 1 cut(s) 410
PmlI CACGTG 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 410
PpuMI RGGWCCY 1 cut(s) 349
PshBI ATTAAT 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 349
PspCI CACGTG 1 cut(s) 410
PspN4I GGNNCC 1 cut(s) 351
PspPI GGNCC 2 cut(s) 349, 376
PspPPI RGGWCCY 1 cut(s) 349
RruI TCGCGA 1 cut(s) 345
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 4 cut(s) 63, 186, 243, 305
Sau3AI GATC 2 cut(s) 148, 162
Sau96I GGNCC 2 cut(s) 349, 376
ScaI AGTACT 1 cut(s) 238
SetI ASST 6 cut(s) 105, 137, 305, 412, 436, 489
SinI GGWCC 2 cut(s) 349, 376
Sse9I AATT 2 cut(s) 144, 223
SsiI CCGC 1 cut(s) 320
SspMI CTAG 2 cut(s) 444, 462
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 385, 481
TaiI ACGT 2 cut(s) 305, 412
TaqI TCGA 1 cut(s) 233
TasI AATT 2 cut(s) 144, 223
TatI WGTACW 1 cut(s) 236
TfiI GAWTC 2 cut(s) 121, 397
Tru1I TTAA 4 cut(s) 63, 186, 243, 305
Tru9I TTAA 4 cut(s) 63, 186, 243, 305
TscAI CASTG 2 cut(s) 204, 218
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 2 cut(s) 204, 218
VpaK11BI GGWCC 2 cut(s) 349, 376
VspI ATTAAT 1 cut(s) 63
XspI CTAG 2 cut(s) 444, 462
ZrmI AGTACT 1 cut(s) 238
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.