Rroxscaffold_1G00005070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002040
Physical Location & Seq
Forward (+)
6865988 .. 6870647
4660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005070.1

Sequence Viewer

Length: 393 bp
ATGATTCGTAGGGAAAGGCAGTGGGTTCAAGTCGGCGGTCCTACGAATGCGGTGTGGTGCGGTGGTCCGGCGACCGAGGCCGGGGCGGGGATGCGAGGCATGGCAGCTTCTTGGGGTCGTCCTCTCTCCCGGGTCAAAGCTCGTGACATTCCGAAATGTTATTTCTCGGAGCAAGTCCTATTGCTACCTCGTCCGAGATATTGCATTAGGGTTGTGATTAATGCACATTTCGCTTTGGAAGTGTTCAACAAGCACAAGGAACATTGCACTGGCAATCCTCCAGTGCAGCTCCAATTGTTTGGTCTTGTTGCTGATAATGGCAATGGGAGCTTGTTGAAAATTATTGACAACAGGCGTTCAGGCCGAGGAGGACCAGTTGATAATCGGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.43

Weight (kDa)

10.58

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 36, 50, 60, 86
AfiI CCNNNNNNNGG 2 cut(s) 81, 87
AgsI TTSAA 3 cut(s) 29, 247, 337
AluBI AGCT 4 cut(s) 107, 140, 289, 330
AluI AGCT 4 cut(s) 107, 140, 289, 330
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 2 cut(s) 78, 361
ApeKI GCWGC 2 cut(s) 104, 286
AseI ATTAAT 1 cut(s) 219
AspS9I GGNCC 3 cut(s) 38, 65, 371
AsuC2I CCSGG 3 cut(s) 82, 130, 131
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 3 cut(s) 38, 65, 371
BauI CACGAG 1 cut(s) 141
BbvI GCAGC 2 cut(s) 116, 298
BcnI CCSGG 3 cut(s) 82, 130, 131
BisI GCNGC 2 cut(s) 105, 287
BlsI GCNGC 2 cut(s) 106, 288
Bme1390I CCNGG 3 cut(s) 82, 130, 131
Bme18I GGWCC 3 cut(s) 38, 65, 371
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 3 cut(s) 38, 65, 371
BmrFI CCNGG 3 cut(s) 82, 130, 131
BmsI GCATC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 264
BpuMI CCSGG 3 cut(s) 82, 130, 131
BsaJI CCNNGG 4 cut(s) 75, 81, 129, 364
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 87
Bse1I ACTGG 3 cut(s) 274, 281, 374
Bse3DI GCAATG 2 cut(s) 262, 328
BseDI CCNNGG 4 cut(s) 75, 81, 129, 364
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 81, 87
BseMI GCAATG 2 cut(s) 262, 328
BseNI ACTGG 3 cut(s) 274, 281, 374
BseRI GAGGAG 1 cut(s) 381
BseXI GCAGC 2 cut(s) 116, 298
BsgI GTGCAG 1 cut(s) 305
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 80, 363
BsiEI CGRYCG 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 3 cut(s) 68, 81, 130
BslI CCNNNNNNNGG 2 cut(s) 81, 87
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 2 cut(s) 80, 363
BsoBI CYCGRG 1 cut(s) 129
BspACI CCGC 4 cut(s) 36, 50, 60, 86
BspANI GGCC 2 cut(s) 80, 363
BsrDI GCAATG 2 cut(s) 262, 328
BsrI ACTGG 3 cut(s) 274, 281, 374
BssECI CCNNGG 4 cut(s) 75, 81, 129, 364
BssSI CACGAG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 96
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 77, 230, 327
BstSCI CCNGG 3 cut(s) 80, 128, 129
BstV1I GCAGC 2 cut(s) 116, 298
BstXI CCANNNNNNTGG 1 cut(s) 299
BsuRI GGCC 2 cut(s) 80, 363
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 3 cut(s) 26, 267, 288
Cfr13I GGNCC 3 cut(s) 38, 65, 371
Cfr9I CCCGGG 1 cut(s) 129
CviAII CATG 1 cut(s) 100
CviJI RGCY 6 cut(s) 80, 107, 140, 289, 330, 363
CviKI_1 RGCY 6 cut(s) 80, 107, 140, 289, 330, 363
Eco47I GGWCC 3 cut(s) 38, 65, 371
Eco88I CYCGRG 1 cut(s) 129
FaeI CATG 1 cut(s) 103
FaiI YATR 1 cut(s) 101
FatI CATG 1 cut(s) 99
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 105, 287
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 2 cut(s) 105, 287
GluI GCNGC 2 cut(s) 105, 287
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 2 cut(s) 80, 363
HapII CCGG 3 cut(s) 68, 81, 130
Hin1II CATG 1 cut(s) 103
HinfI GANTC 1 cut(s) 4
HpaII CCGG 3 cut(s) 68, 81, 130
Hpy188I TCNGA 3 cut(s) 153, 169, 195
Hpy188III TCNNGA 1 cut(s) 143
HpyCH4V TGCA 4 cut(s) 204, 224, 267, 286
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 230, 327
Hsp92II CATG 1 cut(s) 103
LmnI GCTCC 3 cut(s) 169, 294, 327
LpnPI CCDG 8 cut(s) 81, 94, 143, 255, 294, 337, 345, 387
Lsp1109I GCAGC 2 cut(s) 116, 298
LweI GCATC 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 143
MfeI CAATTG 1 cut(s) 293
MluCI AATT 2 cut(s) 293, 339
MnlI CCTC 7 cut(s) 70, 89, 132, 198, 288, 359, 362
MseI TTAA 2 cut(s) 219, 391
MspI CCGG 3 cut(s) 68, 81, 130
MspR9I CCNGG 3 cut(s) 82, 130, 131
MunI CAATTG 1 cut(s) 293
Mva1269I GAATGC 1 cut(s) 52
MwoI GCNNNNNNNGC 3 cut(s) 77, 230, 327
NciI CCSGG 3 cut(s) 82, 130, 131
NlaIII CATG 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 389
NmuCI GTSAC 1 cut(s) 143
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 106, 288
PshBI ATTAAT 1 cut(s) 219
PspPI GGNCC 3 cut(s) 38, 65, 371
SaqAI TTAA 2 cut(s) 219, 391
SatI GCNGC 2 cut(s) 105, 287
Sau96I GGNCC 3 cut(s) 38, 65, 371
ScrFI CCNGG 3 cut(s) 82, 130, 131
SetI ASST 5 cut(s) 109, 142, 190, 291, 332
SfaNI GCATC 1 cut(s) 81
SinI GGWCC 3 cut(s) 38, 65, 371
SmaI CCCGGG 1 cut(s) 131
Sse9I AATT 2 cut(s) 293, 339
SsiI CCGC 4 cut(s) 36, 50, 60, 86
StyD4I CCNGG 3 cut(s) 80, 128, 129
TaqII GACCGA 1 cut(s) 89
TasI AATT 2 cut(s) 293, 339
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 219, 391
Tru9I TTAA 2 cut(s) 219, 391
TscAI CASTG 3 cut(s) 26, 274, 288
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 2 cut(s) 104, 286
Tsp45I GTSAC 1 cut(s) 143
TspMI CCCGGG 1 cut(s) 129
TspRI CASTG 3 cut(s) 26, 274, 288
VpaK11BI GGWCC 3 cut(s) 38, 65, 371
VspI ATTAAT 1 cut(s) 219
XmaI CCCGGG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.