Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Forward (+)

6876489 .. 6877924

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00005080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCAGCTGCTATTCGGTCTATGCTCGGAAAGTCAGGAAATAGAATATCCTCAGTAGCAAACATGGTGGCTATGGGGGATTCTGAAATTAGAACCCTAAATATTAATCATAATCTAAATTTGGGTTATTCCTCTCGTCACCCTCTTGAATCTTTTTCGGTAGTAAACCGTCCCAGAAATATTCGAAGGCCTAAGAAGCTGGAACCTAAACACCCGAATGGCCAACTGCAATTTGTCAAAGTGGTGAAGGCATTTAACCAGTGGAGTGGTGGTTGGAAGAATCATTTGCTAACATTGGAGGCAATTGATGCTGATAATGTGATCAAAACTTACCAAGCTATAGTCGTGGAACATTTTCCTAGCAACCCACCTCCGCAGCTCGTATTGTTCGGCTTGGTTGCTGATGACGGCAATGGGAGTCTGTTAAAGCTTATTGACAACAGGCCTGCATGCATGGGAGGACCGGTCGATAATCGATATGTTGAGCGAGAGAGCATAAAGCTTCAAAAGAAGACGAAGTATTCTCTGGAGGATGGGATTCTTAGCAGCTTGCGGTCTAGCACATGTTTGCCTCCAATAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

21.51

Weight (kDa)

9.76

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	374, 553
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	118
AflIII	ACRYGT	1 cut(s)	563
AgeI	ACCGGT	1 cut(s)	463
AgsI	TTSAA	2 cut(s)	149, 506
AluBI	AGCT	7 cut(s)	8, 199, 338, 379, 430, 502, 549
AluI	AGCT	7 cut(s)	8, 199, 338, 379, 430, 502, 549
AoxI	GGCC	3 cut(s)	188, 220, 443
ApeKI	GCWGC	4 cut(s)	5, 8, 376, 546
ApoI	RAATTY	1 cut(s)	118
AseI	ATTAAT	1 cut(s)	105
AsiGI	ACCGGT	1 cut(s)	463
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	2 cut(s)	131, 256
AsuII	TTCGAA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	461
BalI	TGGCCA	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	518
BbvI	GCAGC	3 cut(s)	17, 388, 558
BccI	CCATC	1 cut(s)	527
BceAI	ACGGC	1 cut(s)	424
BclI	TGATCA	1 cut(s)	321
BfaI	CTAG	2 cut(s)	360, 558
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	4 cut(s)	6, 9, 377, 547
BlsI	GCNGC	4 cut(s)	7, 10, 378, 548
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	204
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	518
BpmI	CTGGAG	1 cut(s)	548
Bpu14I	TTCGAA	1 cut(s)	184
Bsa29I	ATCGAT	1 cut(s)	475
BsaWI	WCCGGW	1 cut(s)	463
BsaXI	ACNNNNNCTCC	4 cut(s)	256, 286, 450, 480
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	418
BseCI	ATCGAT	1 cut(s)	475
BseGI	GGATG	1 cut(s)	538
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	3 cut(s)	17, 388, 558
Bsh1285I	CGRYCG	1 cut(s)	468
BshFI	GGCC	3 cut(s)	190, 222, 445
BshTI	ACCGGT	1 cut(s)	463
BshVI	ATCGAT	1 cut(s)	475
BsiEI	CGRYCG	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	464
BslFI	GGGAC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	3 cut(s)	190, 222, 445
Bsp119I	TTCGAA	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	321
BspACI	CCGC	2 cut(s)	374, 553
BspANI	GGCC	3 cut(s)	190, 222, 445
BspCNI	CTCAG	1 cut(s)	65
BspDI	ATCGAT	1 cut(s)	475
BspLI	GGNNCC	1 cut(s)	204
BspT104I	TTCGAA	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	418
BsrFI	RCCGGY	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	463
BssMI	GATC	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	3 cut(s)	447, 451, 551
BstDEI	CTNAG	3 cut(s)	52, 192, 542
BstF5I	GGATG	1 cut(s)	538
BstKTI	GATC	1 cut(s)	324
BstMBI	GATC	1 cut(s)	321
BstMCI	CGRYCG	1 cut(s)	468
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 308
BstNSI	RCATGY	2 cut(s)	453, 567
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	3 cut(s)	17, 388, 558
BstV2I	GAAGAC	1 cut(s)	518
BstXI	CCANNNNNNTGG	1 cut(s)	266
Bsu15I	ATCGAT	1 cut(s)	475
BsuRI	GGCC	3 cut(s)	190, 222, 445
BsuTUI	ATCGAT	1 cut(s)	475
BtsCI	GGATG	1 cut(s)	538
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	3 cut(s)	447, 451, 551
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	461
ClaI	ATCGAT	1 cut(s)	475
CspAI	ACCGGT	1 cut(s)	463
CspCI	CAANNNNNGTGG	2 cut(s)	48, 83
CviAII	CATG	4 cut(s)	64, 450, 454, 564
DdeI	CTNAG	3 cut(s)	52, 192, 542
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	220
Eco147I	AGGCCT	2 cut(s)	190, 445
Eco47I	GGWCC	1 cut(s)	461
EcoT22I	ATGCAT	1 cut(s)	455
FaeI	CATG	4 cut(s)	67, 453, 457, 567
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	4 cut(s)	63, 449, 453, 563
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	4 cut(s)	6, 9, 377, 547
FokI	GGATG	1 cut(s)	545
Fsp4HI	GCNGC	4 cut(s)	6, 9, 377, 547
FspBI	CTAG	2 cut(s)	360, 558
GluI	GCNGC	4 cut(s)	6, 9, 377, 547
GsuI	CTGGAG	1 cut(s)	548
HaeIII	GGCC	3 cut(s)	190, 222, 445
HapII	CCGG	1 cut(s)	464
Hin1II	CATG	4 cut(s)	67, 453, 457, 567
HindIII	AAGCTT	2 cut(s)	428, 500
HinfI	GANTC	5 cut(s)	80, 149, 280, 418, 538
HpaII	CCGG	1 cut(s)	464
HphI	GGTGA	2 cut(s)	131, 256
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	29, 85
Hpy188III	TCNNGA	3 cut(s)	36, 146, 527
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	180, 241
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	3 cut(s)	229, 449, 453
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 308
HpyF3I	CTNAG	3 cut(s)	52, 192, 542
Hsp92II	CATG	4 cut(s)	67, 453, 457, 567
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	321
LpnPI	CCDG	8 cut(s)	21, 185, 187, 272, 427, 459, 477, 512
Lsp1109I	GCAGC	3 cut(s)	17, 388, 558
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	360, 558
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	2 cut(s)	289, 523
MfeI	CAATTG	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	5 cut(s)	87, 118, 230, 303, 579
MluNI	TGGCCA	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	8 cut(s)	61, 142, 153, 292, 381, 452, 523, 582
Mox20I	TGGCCA	1 cut(s)	222
Mph1103I	ATGCAT	1 cut(s)	455
MroXI	GAANNNNTTC	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	3 cut(s)	105, 255, 425
MslI	CAYNNNNRTG	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	464
MunI	CAATTG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	196, 308
NdeII	GATC	1 cut(s)	321
NlaIII	CATG	4 cut(s)	67, 453, 457, 567
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	455
NspI	RCATGY	2 cut(s)	453, 567
NspV	TTCGAA	1 cut(s)	184
PaeI	GCATGC	1 cut(s)	453
PceI	AGGCCT	2 cut(s)	190, 445
PciI	ACATGT	1 cut(s)	563
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	4 cut(s)	80, 149, 280, 538
PinAI	ACCGGT	1 cut(s)	463
PkrI	GCNGC	4 cut(s)	7, 10, 378, 548
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
PscI	ACATGT	1 cut(s)	563
PshBI	ATTAAT	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	105, 255, 425
SatI	GCNGC	4 cut(s)	6, 9, 377, 547
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	1 cut(s)	427
SetI	ASST	9 cut(s)	10, 201, 208, 340, 373, 381, 432, 504, 551
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	339
SfuI	TTCGAA	1 cut(s)	184
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	216
SphI	GCATGC	1 cut(s)	453
Sse9I	AATT	5 cut(s)	87, 118, 230, 303, 579
SseBI	AGGCCT	2 cut(s)	190, 445
SsiI	CCGC	2 cut(s)	374, 553
SspI	AATATT	2 cut(s)	103, 181
SspMI	CTAG	2 cut(s)	360, 558
StuI	AGGCCT	2 cut(s)	190, 445
TaaI	ACNGT	1 cut(s)	170
TaqI	TCGA	3 cut(s)	184, 468, 475
TaqII	GACCGA	1 cut(s)	6
TasI	AATT	5 cut(s)	87, 118, 230, 303, 579
TfiI	GAWTC	4 cut(s)	80, 149, 280, 538
Tru1I	TTAA	3 cut(s)	105, 255, 425
Tru9I	TTAA	3 cut(s)	105, 255, 425
TscAI	CASTG	1 cut(s)	266
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	4 cut(s)	5, 8, 376, 546
Tsp45I	GTSAC	1 cut(s)	137
TspRI	CASTG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	461
VspI	ATTAAT	1 cut(s)	105
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	2 cut(s)	453, 567
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	2 cut(s)	360, 558
Zsp2I	ATGCAT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.