Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002040

Physical Location & Seq

Genomic Coordinates Forward (+)

23872283 .. 23873984

Gene Structure 1702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTTTTCGGTCTGTGCTTGCAAAGCTGGGGAATAATTGTGTTAAAGGGAGTGAAAGAAGAAGATTGGTTGCCGCCTTTGACACCAGAACCCTACTCAAGTATCATAACATTTGGGATGATGATGAATACCAACAGCTGATGAACGATCGCATTGAACATCAACGTGAAACTGGTCCTTGGCGGAGGGGTGCTCGTAAACGTTTTCGTTTTCTGCCACATCGTCAACCTACGGATAATCCCAACGTTATGGCTTATGCCCATTTGGCCGTGGAAGAGTTCAACAAACAAAAGAATGCACAACTTCAATTTGTGAGAGCAGTGAAGGCATATTGCCAGGAGTACGATGATACCCGGGGAGATAAGTACTATTACCTAACGTTGGAGGCAGTTGATGCTGAAGTTGTTAAAACATACCAAGCAGTAGTTCATGACTCTACTGAGCCATCGCTCCACATTTTTGGTCTTGTTACTGCTAATGGTTTGTTGCAACTAACTGATAACCATGTTCTTTCTGCACTTTATTGCACACTTGACGAACGAGAGGTTCAACCAAAGGGAAGAGGATATTCTGATGAAACAGAGATAGAGGTCGCGCTGCAGACAAGGGGAGGATATTTTCTCCAGGATGAGATACTTGGCTCGTTGCACGGGCTTCCCTCCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

222

Amino Acids

25.65

Weight (kDa)

6.25

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	79 - 146	7.3e-09	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002040)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43000 FvH4_3g43000 FvH4_3g43020 FvH4_6g36050
malus_domestica	MD15G1382700.v1.1 MD17G1149600.v1.1
prunus_persica	Prupe.6G034500_v2.0.a1 Prupe.6G034700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143281 RchiOBHm_Chr6g0253141
rosa_laevigata	RLG00000007620 RLG00000020020 RLG00000020024 RLG00000036651 RLG00000036657
rosa_multiflora	Rmu_sc0002560.1_g000017 Rmu_sc0003323.1_g000030 Rmu_sc0031119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005070 Rroxscaffold_1G00005080 Rroxscaffold_2G00101910 Rroxscaffold_4G00318690 Rroxscaffold_5G00364420
rosa_rugosa	Rorug05G0450800 Rorug05G0450900 Rorug05G0451300
rosa_samantha	Rh1DG126600 Rh2AG432800 Rh2CG418600 Rh2CG418900 Rh4AG238600 Rh4CG253700 Rh5AG505400 Rh5BG527400 Rh5CG550900 Rh5CG551600 Rh5DG539400 Rh5DG539500 Rh5DG539600 Rh6AG057200 Rh6BG051800 Rh6CG049700 Rh6DG045900
rosa_wichuraiana	Rw1G009800 Rw5G047090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	596
AciI	CCGC	2 cut(s)	75, 184
AclI	AACGTT	3 cut(s)	202, 246, 380
AcoI	YGGCCR	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	2 cut(s)	344, 368
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	4 cut(s)	158, 283, 308, 551
AjnI	CCWGG	2 cut(s)	336, 624
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	2 cut(s)	28, 139
AluI	AGCT	2 cut(s)	28, 139
Alw21I	GWGCWC	1 cut(s)	196
Ama87I	CYCGRG	1 cut(s)	354
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	598
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	2 cut(s)	355, 356
AvaI	CYCGRG	1 cut(s)	354
AvaII	GGWCC	1 cut(s)	176
BaeI	ACNNNNGTAYC	2 cut(s)	86, 119
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	585
BccI	CCATC	1 cut(s)	454
BceAI	ACGGC	1 cut(s)	254
BciT130I	CCWGG	2 cut(s)	338, 626
BcnI	CCSGG	2 cut(s)	355, 356
BfmI	CTRYAG	1 cut(s)	599
BglI	GCCNNNNNGGC	1 cut(s)	266
BisI	GCNGC	2 cut(s)	75, 599
BlsI	GCNGC	2 cut(s)	76, 600
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	4 cut(s)	338, 355, 356, 626
Bme18I	GGWCC	1 cut(s)	176
BmeT110I	CYCGRG	1 cut(s)	354
BmgT120I	GGNCC	1 cut(s)	176
BmrFI	CCNGG	4 cut(s)	338, 355, 356, 626
BmsI	GCATC	1 cut(s)	385
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
BpmI	CTGGAG	1 cut(s)	608
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	2 cut(s)	355, 356
BsaJI	CCNNGG	4 cut(s)	179, 270, 354, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	338, 626
BseDI	CCNNGG	4 cut(s)	179, 270, 354, 355
BseGI	GGATG	2 cut(s)	124, 634
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	585
BseYI	CCCAGC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	501
Bsh1236I	CGCG	1 cut(s)	596
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	269
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	2 cut(s)	75, 184
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	596
BspHI	TCATGA	1 cut(s)	430
BspMAI	CTGCAG	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	4 cut(s)	179, 270, 354, 355
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	179
Bst2UI	CCWGG	2 cut(s)	338, 626
Bst6I	CTCTTC	2 cut(s)	270, 556
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	441
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	124, 634
BstFNI	CGCG	1 cut(s)	596
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 266, 326, 395
BstNI	CCWGG	2 cut(s)	338, 626
BstSCI	CCNGG	4 cut(s)	336, 353, 354, 624
BstSFI	CTRYAG	1 cut(s)	599
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	1 cut(s)	585
BstXI	CCANNNNNNTGG	2 cut(s)	250, 461
BsuRI	GGCC	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	270
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	124, 634
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	21
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	176
Cfr9I	CCCGGG	1 cut(s)	354
Csp6I	GTAC	2 cut(s)	343, 367
CviAII	CATG	2 cut(s)	431, 506
CviJI	RGCY	8 cut(s)	5, 28, 139, 254, 269, 445, 642, 655
CviKI_1	RGCY	8 cut(s)	5, 28, 139, 254, 269, 445, 642, 655
CviQI	GTAC	2 cut(s)	343, 367
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	2 cut(s)	270, 556
EarI	CTCTTC	2 cut(s)	270, 556
EciI	GGCGGA	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	354
EcoRII	CCWGG	2 cut(s)	336, 624
EcoT14I	CCWWGG	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	2 cut(s)	434, 509
FaiI	YATR	7 cut(s)	108, 251, 258, 331, 415, 432, 507
FatI	CATG	2 cut(s)	430, 505
Fnu4HI	GCNGC	2 cut(s)	75, 599
FokI	GGATG	2 cut(s)	131, 641
Fsp4HI	GCNGC	2 cut(s)	75, 599
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	2 cut(s)	75, 599
GsaI	CCCAGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	608
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	1 cut(s)	355
HhaI	GCGC	1 cut(s)	598
Hin1II	CATG	2 cut(s)	434, 509
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	200, 227
Hpy188I	TCNGA	1 cut(s)	574
Hpy188III	TCNNGA	1 cut(s)	431
Hpy8I	GTNNAC	2 cut(s)	200, 227
HpyAV	CCTTC	1 cut(s)	319
HpyCH4IV	ACGT	4 cut(s)	166, 202, 246, 380
HpyCH4V	TGCA	7 cut(s)	23, 299, 490, 518, 528, 601, 649
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 266, 326, 395
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	4 cut(s)	166, 202, 246, 380
Hsp92II	CATG	2 cut(s)	434, 509
HspAI	GCGC	1 cut(s)	596
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	456
LpnPI	CCDG	8 cut(s)	14, 100, 159, 323, 350, 368, 611, 638
Lsp1109I	GCAGC	1 cut(s)	585
LweI	GCATC	1 cut(s)	385
MaeII	ACGT	4 cut(s)	166, 202, 246, 380
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	4 cut(s)	72, 75, 287, 573
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	2 cut(s)	37, 308
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	6 cut(s)	180, 379, 538, 557, 583, 605
MseI	TTAA	2 cut(s)	45, 408
MslI	CAYNNNNRTG	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	139
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	4 cut(s)	338, 355, 356, 626
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	2 cut(s)	338, 626
MvnI	CGCG	1 cut(s)	596
MwoI	GCNNNNNNNGC	4 cut(s)	25, 266, 326, 395
NciI	CCSGG	2 cut(s)	355, 356
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	434, 509
PagI	TCATGA	1 cut(s)	430
PctI	GAATGC	1 cut(s)	301
PfoI	TCCNGGA	1 cut(s)	624
PkrI	GCNGC	2 cut(s)	76, 600
Ple19I	CGATCG	1 cut(s)	151
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
Psp1406I	AACGTT	3 cut(s)	202, 246, 380
Psp6I	CCWGG	2 cut(s)	336, 624
PspFI	CCCAGC	1 cut(s)	28
PspGI	CCWGG	2 cut(s)	336, 624
PspPI	GGNCC	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	603
PvuI	CGATCG	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	139
RsaI	GTAC	2 cut(s)	344, 368
RsaNI	GTAC	2 cut(s)	343, 367
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	45, 408
SatI	GCNGC	2 cut(s)	75, 599
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	176
ScaI	AGTACT	1 cut(s)	368
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	4 cut(s)	338, 355, 356, 626
SduI	GDGCHC	1 cut(s)	196
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	599
SinI	GGWCC	1 cut(s)	176
SmaI	CCCGGG	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	2 cut(s)	37, 308
SsiI	CCGC	2 cut(s)	75, 184
StyD4I	CCNGG	4 cut(s)	336, 353, 354, 624
StyI	CCWWGG	1 cut(s)	179
TaiI	ACGT	4 cut(s)	169, 205, 249, 383
TasI	AATT	2 cut(s)	37, 308
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	77
Tru1I	TTAA	2 cut(s)	45, 408
Tru9I	TTAA	2 cut(s)	45, 408
TscAI	CASTG	1 cut(s)	327
TseI	GCWGC	1 cut(s)	598
TspDTI	ATGAA	4 cut(s)	141, 158, 419, 591
TspGWI	ACGGA	1 cut(s)	248
TspMI	CCCGGG	1 cut(s)	354
TspRI	CASTG	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	176
XmaI	CCCGGG	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.